Background & Aims: Anti–liver cytosol type 1 autoantibodies have been reported in association with anti–liver-kidney microsome type 1 autoantibodies in 30% of patients with autoimmune hepatitis type II. In 10% of cases, anti–liver cytosol type 1 antibodies are the only liver-related circulating autoantibodies. The liver cytosol antigen is a liver-specific 62-kilodalton protein present in the cell as an oligomer of ~240 kilodaltons. The aim of this study was to identify the antigen recognized by anti–liver cytosol antibody. Methods: To identify the liver cytosol antigen, an anti–liver cytosol type 1–positive serum was used for the screening of a complementary DNA library from HepG2 cells. Double immunodiffusion method was used to show the identity between the cytosolic and the cloned protein. Results: The sequence of two isolated clones showed 85.2% homology with the formiminotransferase cyclodeaminase (FTCD) enzyme from pig liver. Antibodies purified by affinity with the recombinant protein and sera from mice immunized with FTCD recognized a 62-kilodalton human cytosolic protein when tested by immunoblot. The identity of precipitation lines was found between the cytosolic antigen and FTCD. Conclusions: This enzyme is a liver-specific antigen recognized by the sera of patients with autoimmune hepatitis. GASTROENTEROLOGY 1999;116:643-649