The Ligon lintless-1 mutant (Li 1) mutant discovered by Griffee and Ligon in 1929 is characterized with its short lint fiber, contorted leaf laminae, and a twisted appearance of branches and stems. The Li 1 mutant has never been observed to produce homozygous phenotype Li 1 by selfing since it was introduced in China. From the cross Li 1 × XZ142 FLM, a recombinant with all distorted leaves and short lint fibers was obtained, and there was no segregation in their F 2 progeny. Thus, the mutation was homozygous of Li 1 gene, which was named as Ligon lintless recombinant (Li-R). Three fibreless mutants, XZ142FLM, MD17, and SL1-7-1, were crossed with Li-R to study the allelic relationship between the fibreless mutant genes and Li 1 gene. Segregation of the 4 F 2s derived from Li-R × XZ142FLM, Li-R × TM-1, Li-R × Hai 7124, and Li-R × Li 1 indicated that the segregation of the homozygous-dominant-surviving phenotype of Li-R fit a 2-locus inheritance model. One locus was the dominant Li 1 and another was a novel recessive locus derived from XZ142 FLM, which was named li a . Therefore, the genotype of homozygous-dominant-surviving plant in Li-R is li ali aLi 1Li 1 , and that of homozygous-dominant-leathal plant of Li 1 is Li aLi aLi 1Li 1 . The genotype of XZ142 FLM is li ali ali 1li 1 , and the genotype of the heterozygous Li 1 mutant found in 1929 is Li aLi aLi 1li 1 . Segregation analysis of F 2-derived F 3 families from Li-R × TM-1 revealed that li a is non-allalic to li 3 and n 2 , both genes leading to fibreless seed phenotype.