Bee Lineages Research Articles

Caste-biased gene expression in a facultatively eusocial bee suggests a role for genetic accommodation in the evolution of eusociality.

Developmental plasticity may accelerate the evolution of phenotypic novelty through genetic accommodation, but studies of genetic accommodation often lack knowledge of the ancestral state to place selected traits in an evolutionary context. A promising approach for assessing genetic accommodation involves using a comparative framework to ask whether ancestral plasticity is related to the evolution of a particular trait. Bees are an excellent group for such comparisons because caste-based societies (eusociality) have evolved multiple times independently and extant species exhibit different modes of eusociality. We measured brain and abdominal gene expression in a facultatively eusocial bee, Megalopta genalis, and assessed whether plasticity in this species is functionally linked to eusocial traits in other bee lineages. Caste-biased abdominal genes in M. genalis overlapped significantly with caste-biased genes in obligately eusocial bees. Moreover, caste-biased genes in M. genalis overlapped significantly with genes shown to be rapidly evolving in multiple studies of 10 bee species, particularly for genes in the glycolysis pathway and other genes involved in metabolism. These results provide support for the idea that eusociality can evolve via genetic accommodation, with plasticity in facultatively eusocial species like M. genalis providing a substrate for selection during the evolution of caste in obligately eusocial lineages.

A New Metazoan Recombination Rate Record and Consistently High Recombination Rates in the Honey Bee Genus Apis Accompanied by Frequent Inversions but Not Translocations.

Western honey bees (Apis mellifera) far exceed the commonly observed 1–2 meiotic recombination events per chromosome and exhibit the highest Metazoan recombination rate (20 cM/Mb) described thus far. However, the reasons for this exceptional rate of recombination are not sufficiently understood. In a comparative study, we report on the newly constructed genomic linkage maps of Apis florea and Apis dorsata that represent the two honey bee lineages without recombination rate estimates so far. Each linkage map was generated de novo, based on SNP genotypes of haploid male offspring of a single female. The A. florea map spans 4,782 cM with 1,279 markers in 16 linkage groups. The A. dorsata map is 5,762 cM long and contains 1,189 markers in 16 linkage groups. Respectively, these map sizes result in average recombination rate estimates of 20.8 and 25.1 cM/Mb. Synteny analyses indicate that frequent intra-chromosomal rearrangements but no translocations among chromosomes accompany the high rates of recombination during the independent evolution of the three major honey bee lineages. Our results imply a common cause for the evolution of very high recombination rates in Apis. Our findings also suggest that frequent homologous recombination during meiosis might increase ectopic recombination and rearrangements within but not between chromosomes. It remains to be investigated whether the resulting inversions may have been important in the evolutionary differentiation between honey bee species.

Asteraceae Pollen Provisions Protect Osmia Mason Bees (Hymenoptera: Megachilidae) from Brood Parasitism.

Many specialist herbivores eat foods that are apparently low quality. The compensatory benefits of a poor diet may include protection from natural enemies. Several bee lineages specialize on pollen of the plant family Asteraceae, which is known to be a poor-quality food. Here we tested the hypothesis that specialization on Asteraceae pollen protects bees from parasitism. We compared rates of brood parasitism by Sapyga wasps on Asteraceae-specialist, Fabeae-specialist, and other species of Osmia bees in the field over several years and sites and found that Asteraceae-specialist species were parasitized significantly less frequently than other species. We then tested the effect of Asteraceae pollen on parasites by raising Sapyga larvae on three pollen mixtures: Asteraceae, Fabeae, and generalist (a mix of primarily non-Asteraceae pollens). Survival of parasite larvae was significantly reduced on Asteraceae provisions. Our results suggest that specialization on low-quality pollen may evolve because it helps protect bees from natural enemies.

The Genome and Methylome of a Subsocial Small Carpenter Bee, Ceratina calcarata.

Understanding the evolution of animal societies, considered to be a major transition in evolution, is a key topic in evolutionary biology. Recently, new gateways for understanding social evolution have opened up due to advances in genomics, allowing for unprecedented opportunities in studying social behavior on a molecular level. In particular, highly eusocial insect species (caste-containing societies with nonreproductives that care for siblings) have taken center stage in studies of the molecular evolution of sociality. Despite advances in genomic studies of both solitary and eusocial insects, we still lack genomic resources for early insect societies. To study the genetic basis of social traits requires comparison of genomes from a diversity of organisms ranging from solitary to complex social forms. Here we present the genome of a subsocial bee, Ceratina calcarata. This study begins to address the types of genomic changes associated with the earliest origins of simple sociality using the small carpenter bee. Genes associated with lipid transport and DNA recombination have undergone positive selection in C. calcarata relative to other bee lineages. Furthermore, we provide the first methylome of a noneusocial bee. Ceratina calcarata contains the complete enzymatic toolkit for DNA methylation. As in the honey bee and many other holometabolous insects, DNA methylation is targeted to exons. The addition of this genome allows for new lines of research into the genetic and epigenetic precursors to complex social behaviors.

Specialized and Generalized Pollen-Collection Strategies in an Ancient Bee Lineage

Iconic examples of insect pollination have emphasized narrowly specialized pollinator mutualisms such as figs and fig wasps and yuccas and yucca moths. However, recent attention by pollination ecologists has focused on the broad spectra of pollinated plants by generalist pollinators such as bees. Bees have great impact for formulating hypotheses regarding specialization versus generalization in pollination mutualisms. We report the pollination biology of six northern European species of an extinct tribe of pollen-basket-bearing apine bees, Electrapini, of early-middle Eocene age, examined from two deposits of 48 and 44 million years in age. These bees exhibit a pattern of generalized, incidental pollen occurring randomly on their heads, thoraces, and abdomens, obtained from diverse, nectar-bearing plants. By contrast, a more restricted suite of pollen was acquired for metatibial pollen baskets (corbiculae) of the same bee taxa from a taxonomically much narrower suite of arborescent, evergreen hosts with uniform flower structure. The stereotyped plant sources of the specialist strategy of pollen collection consisted of pentamerous, radially symmetrical flowers with a conspicuous gynoecium surrounded by prominent nectar reward, organized in structurally similar compound inflorescences. Pollen specialization in bees occurs not for efficient pollination but rather in the corbiculate Electrapini as food for bee larvae (brood) and involves packing corbiculae with moistened pollen that rapidly loses viability with age. This specialist strategy was a well-developed preference by the early Eocene, providing a geochronologic midpoint assessment of bee pollen-collection strategies.

Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini).

BackgroundInsects rely more on chemical signals (semiochemicals) than on any other sensory modality to find, identify, and choose mates. In most insects, pheromone production is typically regulated through biosynthetic pathways, whereas pheromone sensory detection is controlled by the olfactory system. Orchid bees are exceptional in that their semiochemicals are not produced metabolically, but instead male bees collect odoriferous compounds (perfumes) from the environment and store them in specialized hind-leg pockets to subsequently expose during courtship display. Thus, the olfactory sensory system of orchid bees simultaneously controls male perfume traits (sender components) and female preferences (receiver components). This functional linkage increases the opportunities for parallel evolution of male traits and female preferences, particularly in response to genetic changes of chemosensory detection (e.g. Odorant Receptor genes). To identify whether shifts in pheromone composition among related lineages of orchid bees are associated with divergence in chemosensory genes of the olfactory periphery, we searched for patterns of divergent selection across the antennal transcriptomes of two recently diverged sibling species Euglossa dilemma and E. viridissima.ResultsWe identified 3185 orthologous genes including 94 chemosensory loci from five different gene families (Odorant Receptors, Ionotropic Receptors, Gustatory Receptors, Odorant Binding Proteins, and Chemosensory Proteins). Our results revealed that orthologs with signatures of divergent selection between E. dilemma and E. viridissima were significantly enriched for chemosensory genes. Notably, elevated signals of divergent selection were almost exclusively observed among chemosensory receptors (i.e. Odorant Receptors).ConclusionsOur results suggest that rapid changes in the chemosensory gene family occurred among closely related species of orchid bees. These findings are consistent with the hypothesis that strong divergent selection acting on chemosensory receptor genes plays an important role in the evolution and diversification of insect pheromone systems.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-015-0451-9) contains supplementary material, which is available to authorized users.

The genomes of two key bumblebee species with primitive eusocial organization.

BackgroundThe shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats.ResultsWe report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits.ConclusionsThese two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.Electronic supplementary materialThe online version of this article (doi:10.1186/s13059-015-0623-3) contains supplementary material, which is available to authorized users.

The evolutionary dynamics of major regulators for sexual development among Hymenoptera species.

All hymenopteran species, such as bees, wasps and ants, are characterized by the common principle of haplodiploid sex determination in which haploid males arise from unfertilized eggs and females from fertilized eggs. The underlying molecular mechanism has been studied in detail in the western honey bee Apis mellifera, in which the gene complementary sex determiner (csd) acts as primary signal of the sex determining pathway, initiating female development by csd-heterozygotes. Csd arose from gene duplication of the feminizer (fem) gene, a transformer (tra) ortholog, and mediates in conjunction with transformer2 (tra2) sex-specific splicing of fem. Comparative molecular analyses identified fem/tra and its downstream target doublesex (dsx) as conserved unit within the sex determining pathway of holometabolous insects. In this study, we aim to examine evolutionary differences among these key regulators. Our main hypothesis is that sex determining key regulators in Hymenoptera species show signs of coevolution within single phylogenetic lineages. We take advantage of several newly sequenced genomes of bee species to test this hypothesis using bioinformatic approaches. We found evidences that duplications of fem are restricted to certain bee lineages and notable amino acid differences of tra2 between Apis and non-Apis species propose structural changes in Tra2 protein affecting co-regulatory function on target genes. These findings may help to gain deeper insights into the ancestral mode of hymenopteran sex determination and support the common view of the remarkable evolutionary flexibility in this regulatory pathway.

Investigating Eusociality in Bees while Trusting the Uncertainty

Phylogenetic hypotheses and estimates of divergence times have already been used to investigate the evolution of social behavior in all lineages of bees. The interpretation of the number of origins of eusocial behavior and the timing these events depends on reliable phylogenetic hypotheses for the clades in which these lineages are nested. Three to six independent origins of eusocial behavior are interpreted to have occurred in bee taxa that differentiated in the Late Cretaceous, or much later in the Paleogene. Only two groups of bees exhibit the behaviors that qualify their members to be considered obligate eusocial, the honey bees (Apina) and the stingless bees (Meliponina). The evolutionary history of corbiculate bees remains uncertain in many respects, but phylogenetic research has been paving the path for comprehensive comparative approaches likely to shed light on the origin of diversity of forms and behaviors of these bees. In total, corbiculate bees encompass about 1000 species, roughly 5% of the described species diversity of bees. These bees are rather heterogeneous in terms of social organization, particularly stingless bees and orchid bees, which display a fascinating range of behavioral variation. Using phylogenetic tools, it has been possible to infer that caste polymorphism, division of labor and other traits of corbiculate bees probably started evolving over 80 million years ago. Phylogenetic hypotheses must be interpreted as more or less uncertain scenarios for studying the biological diversity, but when trusted they can provide powerful tools to investigate the evolution of social behaviors.

Infectivity and virulence of Nosema ceranae and Nosema apis in commercially available North American honey bees

Nosema ceranae infection is ubiquitous in western honey bees, Apis mellifera, in the United States and the pathogen has apparently replaced Nosema apis in colonies nationwide. Displacement of N. apis suggests that N. ceranae has competitive advantages but N. ceranae was significantly less infective and less virulent than N. apis in commercially available lineages of honey bees in studies conducted in Illinois and Texas. At 5days post eclosion, the most susceptible age of adult bees tested, the mean ID50 for N. apis was 359 spores compared to 3217 N. ceranae spores, a nearly 9-fold difference. Infectivity of N. ceranae was also lower than N. apis for 24-h and 14-day worker bees. N. ceranae was less infective than reported in studies using European strains of honey bees, while N. apis infectivity, tested in the same cohort of honey bees, corresponded to results reported globally from 1972 to 2010. Mortality of worker bees was similar for both pathogens at a dosage of 50 spores and was not different from the uninfected controls, but was significantly higher for N. apis than N. ceranae at dosages ⩾500 spores. Our results provide comparisons for evaluating research using different ages of bees and pathogen dosages and clarify some controversies. In addition, comparisons among studies suggest that the mixed lineages of US honey bees may be less susceptible to N. ceranae infections than are European bees or that the US isolates of the pathogen are less infective and less virulent than European isolates.

Mitochondrial DNA Diversity of Honey Bees (Apis mellifera) from Unmanaged Colonies and Swarms in the United States

To study the genetic diversity of honey bees (Apis mellifera L.) from unmanaged colonies in the United States, we sequenced a portion of the mitochondrial DNA COI-COII region. From the 530 to 1,230 bp amplicon, we observed 23 haplotypes from 247 samples collected from 12 states, representing three of the four A. mellifera lineages known to have been imported into the United States (C, M, and O). Six of the 13 C lineage haplotypes were not found in previous queen breeder studies in the United States. The O lineage accounted for 9% of unmanaged colonies which have not yet been reported in queen breeder studies. The M lineage accounted for a larger portion of unmanaged samples (7%) than queen breeder samples (3%). Based on our mitochondrial DNA data, the genetic diversity of unmanaged honey bees in the United States differs significantly from that of queen breeder populations (p < 0.00001). The detection of genetically distinct maternal lineages of unmanaged honey bees suggests that these haplotypes may have existed outside the managed honey bee population for a long period.

Greater past disparity and diversity hints at ancient migrations of European honey bee lineages into Africa and Asia

AbstractAimWe re‐evaluated the proposition based on the present‐day distribution of honey bees (genus Apis) that their centre of origin resides in Asia, with subsequent migration and diversification into Europe and Asia. In our research, we considered the so‐far largely ignored fossils distributed through a variety of late Palaeogene (Oligocene) and early Neogene (Miocene) deposits, aiming at a synthesis of both present‐day and past honey bee distribution.LocationNorthern Hemisphere, Africa, Southeast Asia.MethodsWe examined the morphological diversity (also termed ‘disparity’) and affinities of the full living and fossil diversity of honey bees ranging from their earliest origins to the present day. Based on the fossil record and present‐day distribution of species, considering continental drift from the Oligocene until today, we have established an evolution and migration scenario for the genus Apis.ResultsThe fossil record of Apis demonstrates a diversity that is predominantly European in origin, particularly among the most basal species of the genus. Honey bees exhibited a greater morphological disparity during the Oligocene and, particularly, the Miocene epochs, a time when the principal lineages were established. Contradicting earlier propositions, the geological models allowed a migration via western Europe to north‐western Africa during the Miocene, and the fossil record corroborates such a migration.Main conclusionsFrom the full complement of available data, Apis apparently originated in Europe, spreading from there into Asia, Africa and North America, with subsequent diversification in the former two regions and extinction in the latter. The western honey bee, Apis mellifera, descended from European ancestors that probably migrated from western Europe to Africa during the late Miocene and re‐immigrated into Europe during the Holocene and possibly preceding interglacials.

Bees diversified in the age of eudicots.

Reliable estimates on the ages of the major bee clades are needed to further understand the evolutionary history of bees and their close association with flowering plants. Divergence times have been estimated for a few groups of bees, but no study has yet provided estimates for all major bee lineages. To date the origin of bees and their major clades, we first perform a phylogenetic analysis of bees including representatives from every extant family, subfamily and almost all tribes, using sequence data from seven genes. We then use this phylogeny to place 14 time calibration points based on information from the fossil record for an uncorrelated relaxed clock divergence time analysis taking into account uncertainties in phylogenetic relationships and the fossil record. We explore the effect of placing a hard upper age bound near the root of the tree and the effect of different topologies on our divergence time estimates. We estimate that crown bees originated approximately 123 Ma (million years ago) (113-132 Ma), concurrently with the origin or diversification of the eudicots, a group comprising 75 per cent of angiosperm species. All of the major bee clades are estimated to have originated during the Middle to Late Cretaceous, which is when angiosperms became the dominant group of land plants.

A new South American species of Centris (Heterocentris) Cockerell, 1899 with a key to the species with horn-like projections on the clypeus (Hymenoptera: Apidae: Centridini)

The genus Centris Fabricius, 1804 is one of the more diverse lineages of solitary bees in the Neotropical Region with more than250 described species. Here Centris ceratops new species is described from a tropical dry forest in northern Colombia (Colosó,Department of Sucre), thus increasing the number of known species to four in which the females possess a horn-like projectionon the clypeus. This group of bees belongs to a small monophyletic group within C. (Heterocentris). Along with the description of this new species, diagnosis, pictures and a key to identify the species of females with modified clypeus are also provided.

Survival and immune response of drones of a Nosemosis tolerant honey bee strain towards N. ceranae infections

Honey bee colonies (Apis mellifera) have been selected for low level of Nosema in Denmark over decades and Nosema is now rarely found in bee colonies from these breeding lines. We compared the immune response of a selected and an unselected honey bee lineage, taking advantage of the haploid males to study its potential impact on the tolerance toward Nosema ceranae, a novel introduced microsporidian pathogen. After artificial infections of the N. ceranae spores, the lineage selected for Nosema tolerance showed a higher N. ceranae spore load, a lower mortality and an up-regulated immune response. The differences in the response of the innate immune system between the selected and unselected lineage were strongest at day six post infection. In particular genes of the Toll pathway were up-regulated in the selected strain, probably is the main immune pathway involved in N. ceranae infection response. After decades of selective breeding for Nosema tolerance in the Danish strain, it appears these bees are tolerant to N. ceranae infections.

Three QTL in the honey bee Apis mellifera L. suppress reproduction of the parasitic mite Varroa destructor.

Varroa destructor is a highly virulent ectoparasitic mite of the honey bee Apis mellifera and a major cause of colony losses for global apiculture. Typically, chemical treatment is essential to control the parasite population in the honey bee colony. Nevertheless a few honey bee populations survive mite infestation without any treatment. We used one such Varroa mite tolerant honey bee lineage from the island of Gotland, Sweden, to identify quantitative trait loci (QTL) controlling reduced mite reproduction. We crossed a queen from this tolerant population with drones from susceptible colonies to rear hybrid queens. Two hybrid queens were used to produce a mapping population of haploid drones. We discriminated drone pupae with and without mite reproduction, and screened the genome for potential QTL using a total of 216 heterozygous microsatellite markers in a bulk segregant analysis. Subsequently, we fine mapped three candidate target regions on chromosomes 4, 7, and 9. Although the individual effect of these three QTL was found to be relatively small, the set of all three had significant impact on suppression of V. destructor reproduction by epistasis. Although it is in principle possible to use these loci for marker-assisted selection, the strong epistatic effects between the three loci complicate selective breeding programs with the Gotland Varroa tolerant honey bee stock.

Larval and nurse worker control of developmental plasticity and the evolution of honey bee queen-worker dimorphism

Social evolution in honey bees has produced strong queen-worker dimorphism for plastic traits that depend on larval nutrition. The honey bee developmental programme includes both larval components that determine plastic growth responses to larval nutrition and nurse components that regulate larval nutrition. We studied how these two components contribute to variation in worker and queen body size and ovary size for two pairs of honey bee lineages that show similar differences in worker body-ovary size allometry but have diverged over different evolutionary timescales. Our results indicate that the lineages have diverged for both nurse and larval developmental components, that rapid changes in worker body-ovary size allometry may disrupt queen development and that queen-worker dimorphism arises mainly from discrete nurse-provided nutritional environments, not from a developmental switch that converts variable nutritional environments into discrete phenotypes. Both larval and nurse components have likely contributed to the evolution of queen-worker dimorphism.

Effects of Fossil Calibration Uncertainty on Divergence Dating in Ants and Bees

Divergence dating has become one of the most popular applications of molecular phylogenetics over the last decade. This technique combines models of molecular evolution with information about ages of select groups within a phylogenetic tree to infer divergence times for the entire tree in the form of a chronogram. These chronograms have in turn informed many areas of evolutionary biology including historical biogeography. evolution of adaptive characters, and rates of species diversification. The information used to calibrate divergence dating studies most frequently comes in the form of fossil evidence. This paper explores some potential impacts of fossil calibration uncertainty on divergence dating results, using work from myself and collaborators on ants and bees. Among Hymenoptera in general, divergence dating studies so far have been largely restricted to these two taxa (Brady et al. 2009). The poor preservation and vast incompleteness of the fossil record prevalent in most insect groups presents several concerns. In studies that are only able to employ a few fossil calibrations, fossils with incomplete taxonomic or temporal data may exercise a pathological influence on dating results. There are several potential avenues to assess this, but a simple and direct approach is to remove suspect calibrations and see how this changes the results. For example, Brady et al. (2006b) used divergence dating to examine the timing of eusocial evolution in sweat bees of the family Halictidae. The fossil record for halictid bees is quite poor, so only three fossil calibrations were available for this study. After conducting analyses using all three constraints, the authors removed the two recent Dominican amber calibrations and reran the analyses. The results were the same with and without this removal, indicating that eusociality evolved approximately 20-22 million years ago in three separate lineages of sweat bees. If one is particularly concerned about the age assigned to the fossils, one could investigate whether different age assignments influence results. For example, in a divergence dating study on ants, Moreau et al. (2006) observed that there was some uncertainty of about 5 million years over the ages of three fossil strata used to provide some of their fossil minimum age calibrations. They ran separate analyses using different age assignments for these three strata, and reported that this resulted in a 28-million-year age difference for the age of extant ants. However; when Brady et al. (2006a) repeated this same procedure on a similar data set, they found a difference of only 0-2 million years. It appears that factors other

Origin of a function by tandem gene duplication limits the evolutionary capability of its sister copy

The most remarkable outcome of a gene duplication event is the evolution of a novel function. Little information exists on how the rise of a novel function affects the evolution of its paralogous sister gene copy, however. We studied the evolution of the feminizer (fem) gene from which the gene complementary sex determiner (csd) recently derived by tandem duplication within the honey bee (Apis) lineage. Previous studies showed that fem retained its sex determination function, whereas the rise of csd established a new primary signal of sex determination. We observed a specific reduction of nonsynonymous to synonymous substitution ratios in Apis to non-Apis fem. We found a contrasting pattern at two other genetically linked genes, suggesting that hitchhiking effects to csd, the locus under balancing selection, is not the cause of this evolutionary pattern. We also excluded higher synonymous substitution rates by relative rate testing. These results imply that stronger purifying selection is operating at the fem gene in the presence of csd. We propose that csd's new function interferes with the function of Fem protein, resulting in molecular constraints and limited evolvability of fem in the Apis lineage. Elevated silent nucleotide polymorphism in fem relative to the genome-wide average suggests that genetic linkage to the csd gene maintained more nucleotide variation in today's population. Our findings provide evidence that csd functionally and genetically interferes with fem, suggesting that a newly evolved gene and its functions can limit the evolutionary capability of other genes in the genome.

Phylogeny, diversification patterns and historical biogeography of euglossine orchid bees (Hymenoptera: Apidae)

The orchid bees constitute a clade of prominent insect pollinators distributed throughout the Neotropical region. Males of all species collect fragrances from natural sources, including flowers, decaying vegetation and fungi, and store them in specialized leg pockets to later expose during courtship display. In addition, orchid bees provide pollination services to a diverse array of Neotropical angiosperms when foraging for food and nesting materials. However, despite their ecological importance, little is known about the evolutionary history of orchid bees. Here, we present a comprehensive molecular phylogenetic analysis based on ∼4.0 kb of DNA from four loci [cytochrome oxidase (CO1), elongation factor 1-α (EF1-α), arginine kinase (ArgK) and RNA polymerase II (Pol-II)] across the entire tribe Euglossini, including all five genera, eight subgenera and 126 of the approximately 200 known species. We investigated lineage diversification using fossil-calibrated molecular clocks and the evolution of morphological traits using disparity-through-time plots. In addition, we inferred past biogeographical events by implementing model-based likelihood methods. Our dataset supports a new view on generic relationships and indicates that the cleptoparasitic genus Exaerete is sister to the remaining orchid bee genera. Our divergence time estimates indicate that extant orchid bee lineages shared a most recent common ancestor at 27–42 Mya. In addition, our analysis of morphology shows that tongue length and body size experienced rapid disparity bursts that coincide with the origin of diverse genera (Euglossa and Eufriesea). Finally, our analysis of historical biogeography indicates that early diversification episodes shared a history on both sides of Mesoamerica, where orchid bees dispersed across the Caribbean, and through a Panamanian connection, thus reinforcing the hypothesis that recent geological events (e.g. the formation of the isthmus of Panama) contributed to the diversification of the rich Neotropical biota. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100, 552–572.