Aims. We aim to assess the complementarity between spectroscopic and interferometric observations in the characterisation of the inner star-disc interaction region of young stars. Methods. We used the MCFOST code to solve the non-local thermodynamic equilibrium problem of line formation in non-axisymmetric accreting magnetospheres. We computed the Brγ line profile originating from accretion columns for models with different magnetic obliquities. We also derived monochromatic synthetic images of the Brγ line-emitting region across the line profile. This spectral line is a prime diagnostic of magnetospheric accretion in young stars and is accessible with the long baseline near-infrared interferometer GRAVITY installed at the ESO Very Large Telescope Interferometer. Results. We derive Brγ line profiles as a function of rotational phase and compute interferometric observables, visibilities, and phases, from synthetic images. The line profile shape is modulated along the rotational cycle, exhibiting inverse P Cygni profiles at the time the accretion shock faces the observer. The size of the line’s emission region decreases as the magnetic obliquity increases, which is reflected in a lower line flux. We apply interferometric models to the synthetic visibilities in order to derive the size of the line-emitting region. We find the derived interferometric size to be more compact than the actual size of the magnetosphere, ranging from 50 to 90% of the truncation radius. Additionally, we show that the rotation of the non-axisymmetric magnetosphere is recovered from the rotational modulation of the Brγ-to-continuum photo-centre shifts, as measured by the differential phase of interferometric visibilities. Conclusions. Based on the radiative transfer modelling of non-axisymmetric accreting magnetospheres, we show that simultaneous spectroscopic and interferometric measurements provide a unique diagnostic to determine the origin of the Brγ line emitted by young stellar objects and are ideal tools to probe the structure and dynamics of the star-disc interaction region.