Nutrient Limitation Research Articles

Soil Fertility Dynamics and Identify the Most Limiting Nutrients Affecting Walnut Productivity in Nepal

This study aimed to assess the soil nutrient status in walnut orchards of different ages in Jajarkot district, Nepal, to understand soil fertility dynamics and identify the most limiting nutrients affecting walnut productivity. The research employed a randomized complete block design (RCBD) with three treatments representing different age groups of walnut orchards (1-5 years, 6-10 years, and 11-15 years), each replicated seven times across various municipalities. The study was conducted in Jajarkot district, Karnali Province, Nepal, encompassing municipalities including Nalgad, Junichadey, and Barekot, from March to April 2023. Soil samples were collected from multiple depths (1, 2, and 3 feet) in each orchard and analyzed for pH, soil organic matter (SOM), total nitrogen, available phosphorus, and available potassium. Data analysis included descriptive statistics, one-way analysis of variance (ANOVA), and correlation analyses to explore relationships between soil parameters and orchard age. The study showed that significant variations were observed among different age groups of walnut orchards for soil pH, SOM, nitrogen, phosphorus, and potassium levels. Soil pH decreased with orchard age, while SOM, nitrogen, and phosphorus tended to increase with orchard age. Phosphorus was identified as the most limiting nutrient across all sampled soils, followed by nitrogen and potassium. Moreover, strong correlations were found between orchard age and soil N (r = 0.894, p < 0.01) and P (r = 0.776, p < 0.01), underscoring age-dependent nutrient dynamics. The study highlights the critical role of orchard age in shaping soil nutrient dynamics in walnut orchards. Older orchards exhibited higher levels of SOM, nitrogen, and phosphorus, indicating the accumulation of organic matter and nutrients over time. Phosphorus emerged as the primary limiting nutrient, essential for root growth, flowering, and fruiting in walnut trees. These findings underscore the importance of targeted fertilization strategies to optimize soil fertility and sustain long-term walnut productivity in the region.

Soil pH amendment alters the abundance, diversity, and composition of microbial communities in two contrasting agricultural soils.

This study delves into the impact of soil pH on microbial communities, investigating whether pH directly or indirectly influences bacterial and fungal communities. The research involved two contrasting soils subjected to a 1-2 pH unit amendment. Results indicate bacterial community composition was shaped by soil pH through physiological constraints and nutrient limitations. We found that most taxa relative abundances at the phylum and family levels responded to pH with a quadratic fitting pattern, indicating that soil pH is a reliable predictor. Additionally, soil pH was found to significantly influence the predicted abundance of functional genes involved in the nitrogen cycle as well as in methane production and consumption processes. These insights can contribute to develop more effective soil management and conservation strategies.

Nitrogen starvation leads to TOR kinase-mediated downregulation of fatty acid synthesis in the algae Chlorella sorokiniana and Chlamydomonas reinhardtii

BackgroundWhen subject to stress conditions such as nutrient limitation microalgae accumulate triacylglycerol (TAG). Fatty acid, a substrate for TAG synthesis is derived from de novo synthesis or by membrane remodeling. The model industrial alga Chlorellasorokiniana accumulates TAG and other storage compounds under nitrogen (N)-limited growth. Molecular mechanisms underlying these processes are still to be elucidated.ResultPreviously we used transcriptomics to explore the regulation of TAG synthesis in C. sorokiniana. Surprisingly, our analysis showed that the expression of several key genes encoding enzymes involved in plastidic fatty acid synthesis are significantly repressed. Metabolic labeling with radiolabeled acetate showed that de novo fatty acid synthesis is indeed downregulated under N-limitation. Likewise, inhibition of the Target of Rapamycin kinase (TOR), a key regulator of metabolism and growth, decreased fatty acid synthesis. We compared the changes in proteins and phosphoprotein abundance using a proteomics and phosphoproteomics approach in C. sorokiniana cells under N-limitation or TOR inhibition and found extensive overlap between the N-limited and TOR-inhibited conditions. We also identified changes in the phosphorylation status of TOR complex proteins, TOR-kinase, and RAPTOR, under N-limitation. This indicates that TOR signaling is altered in a nitrogen-dependent manner. We find that TOR-mediated metabolic remodeling of fatty acid synthesis under N-limitation is conserved in the chlorophyte algae Chlorella sorokiniana and Chlamydomonas reinhardtii.ConclusionOur results indicate that under N-limitation there is significant metabolic remodeling, including fatty acid synthesis, mediated by TOR signaling. This process is conserved across chlorophyte algae. Using proteomic and phosphoproteomic analysis, we show that N-limitation affects TOR signaling and this in-turn affects the metabolic status of the cells. This study presents a link between N-limitation, TOR signaling and fatty acid synthesis in green-lineage.

A stoichiometric insight into the seasonal imbalance of phosphorus and nitrogen in central European fishponds

BackgroundThis study examines seasonal and regional trends in chlorophyll-a concentrations and the dynamics of nitrogen (N) and phosphorus (P) in 32 fishponds (resulting in 150 pond-year cases) employed for fish production. Fishponds have a poor ecological state, requiring further insights for pond management. To gain those insights, monthly data on the pond environment were collected over the growing seasons from April to September (up to 14 years) across lowland to highland regions in Czechia. We used a ratio of dissolved inorganic nitrogen to total phosphorus (DIN:TP) to investigate seasonal patterns of N and P limitations.ResultsFishponds in the lowland region (below 199 m above sea level, a.s.l.) were predominantly N-limited (80%), while ponds in the midland region (200–449 m a.s.l.) exhibited P limitation at the beginning of the growing season (April–May) and N limitation by the end of the season (August–September; 90% of fishponds). Highland fishponds (above 450 m a.s.l.) showed frequent P limitations, especially during the beginning of the season. Chlorophyll-a concentrations varied on both regional and seasonal scales, with the overall phytoplankton biomass peak at 31 ha of pond surface area. Chlorophyll-a remained stable at the beginning of the season regardless of the DIN:TP ratio but increased with a lower DIN:TP ratio by its end. The chlorophyll-a concentrations were lowest at the beginning and highest at the end of the season and decreased with altitude.ConclusionsSeasonal and regional variations in nutrient limitations and chlorophyll-a occur in fishponds. Our study suggests that targeted seasonal nutrient input and enhanced monitoring can significantly improve fishpond management practices and ecosystem stability.

Soil aggregate size distribution mediates microbial responses to prolonged acid deposition in a subtropical forest in south China

Extended exposure to acid rain has vastly limited soil microbial activity with the consequences for soil carbon (C) storage, but less is known about the microbial responses within soil aggregates that to some extent determine soil C stabilization. Here, we investigated the main microbial group compositions and the relevant potential enzyme activities within different soil aggregates sizes (microaggregates (<250 μm), small macroaggregates (250–2000 μm), and microaggregates (>2000 μm)) in a subtropical forest with decade-long simulated acid rain (SAR) treatments. Four SAR treatments were set by irrigating plots with water of different pH values (i.e., 3.0, 3.5, 4.0, and 4.5 as a control). Results showed that the SAR treatment significantly inhibited microbial activities, specifically decreasing both bacterial and fungal abundances, leading to declines in C-degrading potential enzyme activities. Conversely, potential enzyme activities related to phosphorus (P) and nitrogen (N) mineralization as well as the enzyme stoichiometry for P/N ratio significantly increased under the SAR treatment. The SAR treatment showed no significant differences in microbial abundance across the three soil aggregate sizes. However, it had a more pronounced effect on potential enzyme activities in their optimal aggregate sizes, such as hydrolytic enzymes like β-glucosidase in macroaggregates and oxidases like phenol oxidase and peroxidase in microaggregates. Overall, C-degrading potential enzyme activities were more strongly decreased in the microaggregates than in macroaggregates, and the distribution in aggregates was significantly altered, transforming from large to small sizes under the SAR treatment, which together may boost SOC stabilization and accumulation. Additionally, our findings indicate that prolonged acid rain also caused soil nutrient limitation and imbalance, particularly for P, in subtropical forests. This study highlights the importance of soil aggregate size in regulating microbial responses to acid rain, which should be integrated into ecosystem models to predict soil biogeochemical cycles under future climate conditions.

Limiting factors in the operation of photosystems I and II in cyanobacteria.

Cyanobacteria are important targets for biotechnological applications due to their ability to grow in a wide variety of environments, rapid growth rates, and tractable genetic systems. They and their bioproducts can be used as bioplastics, biofertilizers, and in carbon capture and produce important secondary metabolites that can be used as pharmaceuticals. However, the photosynthetic process in cyanobacteria can be limited by a wide variety of environmental factors such as light intensity and wavelength, exposure to UV light, nutrient limitation, temperature, and salinity. Carefully considering these limitations, modifying the environment, and/or selecting cyanobacterial species will allow cyanobacteria to be used in biotechnological applications.

Characterization of carbon, nitrogen, and phosphorus stoichiometry of plant leaves in the riparian zone of Dahuofang Reservoir.

Carbon (C), nitrogen (N), and phosphorus (P) are essential nutrients that promote plant growth and development and maintain the stability of ecosystem structure and function. Analyzing the C, N, and P characteristics of plant leaves aids in understanding the plant's nutrient status and nutrient limitation. Seasonal water-level fluctuations in riparian zones lead to various ecological problems, such as reduced biodiversity and decreased ecosystem stability. Therefore, comprehending the stoichiometric characteristics of riparian zone plants and their nutrient response to plant traits is important for a deeper insight into riparian zone forest ecosystems. This study analyzed the C, N, and P contents of the leaves of 44 woody plants in the riparian zone of the Dahuofang Reservoir to investigate the stoichiometric characteristics of C, N, and P of trees in the region. The results showed that the average C content of the leaves in woody plants was 446.9 g kg-1; the average N content was 28.42 g kg-1; and the average P content was 2.26 g kg-1. Compared to global and regional scales, woody plants in the riparian zone of the Dahuofang Reservoir exhibited higher N and P contents but lower N:P ratios. Compared to other riparian zones, woody plant leaves in the riparian zone of Dahuofang Reservoir had relatively high N content and N:P ratios. Variations in plant stoichiometric characteristics across different life forms were minimal, with only tree leaf P content significantly lower than its in shrubs. There was no significant correlation between leaf C, N, and P in woody plants, while specific leaf area showed a negative correlation with leaf C content. Trees in the riparian zone have high leaf N and P content and are primarily N-limited during the growing season. This study reveals the stoichiometric characteristics of leaves of woody plants in the riparian zone, which can contribute to an in-depth understanding of leaf stoichiometric patterns and the factors influencing them among plant life types in the riparian zone.

Effects of restoration years on soil stoichiometric ratios in subtropical secondary forests.

Soil stoichiometric ratios serve as valuable indicators for the composition and quality of soil organic matter. While available studies predominantly examine the soil stoichiometric ratios of carbon (C), nitrogen (N), and phosphorus (P), limited attention has been paid on the influence of forest restoration on soil stoichiometric ratios of potassium (K), calcium (Ca), and magnesium (Mg). We analyzed soil K, Ca, and Mg content, as well as elemental stoichiometric ratios, in secondary forests with varying restoration periods (5, 8, 21, 27 and 40 years) and a natural forest, in order to examine the impact of forest restoration on soil stoichiometry. The results showed that soil C and N contents decreased significantly with increasing soil layers. Soil stoichiometric ratios decreased significantly with increasing soil layers except for K:P, Mg:P, and P:Ca. With the increases of forest restoration years, soil C and N contents significantly increased in 0-10 cm soil layer, Ca content in 10-20 cm soil layer significantly increased, and total P content in 20-40 cm layer significantly decreased. However, soil K and Mg contents in each soil layer did not differ among five restoration ages. With the increases of restoration years, C:Ca, N:Ca and P:Ca in 0-10 cm soil layer significantly increased, and C:P, N:P, and K:P in 20-40 cm soil layer significantly increased, while P:Ca in 20-40 cm soil layer significantly decreased. In all soil layers, K:P and Mg:P were significantly and negatively correlated with soil total P content, and C:Ca and N:Ca were significantly and positively correlated with soil mineral N, available P, and available K content. With the increases of the restoration ages of secondary forests, soils are gradually P-limited and progressively restricted by Ca element in the later years, leading to the limitation of multiple nutrients.

Variations in plant–microbe–soil C:N:P stoichiometry along a 900-year age gradient in Torreya grandis ‘Merrillii’ plantations in Southeast China

Researches on the ecological stoichiometry of forest vegetation at different growth stages under long-term human management activities and its driving factors will help to clarify how the limited nutrient resources are allocated at different growth stages of forests, providing a basis and suggestions for scientific cultivation of artificial forests. In subtropical China, the C:N:P stoichiometry of an ancient Torreya grandis ‘Merrillii’ community was measured in leaves, twigs, roots, soils, and soil microbes with age gradients of 0–50, 50–100, 100–300, 300–500, and more than 500 years. The results showed that the nutrient use varied with tree ages. The N and P concentrations in the leaves, twigs, and roots of T. grandis had the similar increasing trends with the increasing tree age, and the N concentrations in leaves in 0-50-year-old forests were significantly lower than those forests of other ages. Particularly, the N:P ratio of different organs was always below 10, reflecting limited N supply of plants. The soil C content increased with the increasing T. grandis forest ages while the soil microbe C showed a fluctuated trend. There was a higher correlation among the C, N and P contents and their ratios in leaves, twigs and roots of 0-50-year-old forests than that in soil microbes, but inversely at more than 500-year-old forests. The homeostasis analysis results showed that the roots and soil microbes are more indicative of soil nutrient availability. The results of redundancy analysis showed that acid phosphatase activity had the highest impact on soil microbes in 0–10 and 10–20 cm soil layers, confirming that the decomposition and transformation of P in soils is very active. Moreover, soil enzyme activity mediates the influence of soil microbes on soil N and P limitation. In summary, tree age can effect the plant–microbe–soil C:N:P stoichiometry of T. grandis forests. The growth of T. grandis is mainly restricted by N, and reasonable application of N fertilizer is needed to promote its growth.

Mechanisms of litter input changes on soil organic carbon dynamics: a microbial carbon use efficiency-based perspective

Plant litter is an important source of soil organic carbon (SOC) in terrestrial ecosystems, and the pattern of litter inputs is also influenced by global change and human activities. However, the current understanding of the impact of changes in litter inputs on SOC dynamics remains contentious, and the mechanisms by which changes in litter inputs affect SOC have rarely been investigated from the perspective of microbial carbon use efficiency (CUE). We conducted a 1-year experiment with litter treatments (no aboveground litter (NL), natural aboveground litter (CK), and double aboveground litter (DL)) in Robinia pseudoacacia plantation forest on the Loess Plateau. The objective was to assess how changes in litter input affect SOC accumulation in forest soils from the perspective of microbial CUE. Results showed that NL increased soil microbial C limitation by 77.11 % (0–10 cm) compared to CK, while it had a negligible effect on nitrogen and phosphorus limitation. In contrast, DL had no significant effect on soil microbial nutrient limitation. Furthermore, NL was found to significantly increase microbial CUE and decrease microbial metabolic quotient (QCO2), while the opposite was observed with DL. It is noteworthy that NL significantly contributed to an increase in SOC of 30.72 %, while DL had no significant effect on SOC. Correlation analysis showed that CUE was directly proportional to SOC and inversely proportional to QCO2. The partial least squares pathway model indicated that NL indirectly regulated the accumulation of SOC, mainly through two pathways: promoting microbial CUE increase and reducing QCO2. Overall, this study elucidates the mechanism and novel insights regarding SOC accumulation under changes in litter input from the perspective of microbial CUE. These findings are critical for further comprehension of soil carbon dynamics and the terrestrial C-cycle.

Effects of leguminous green manure-crop rotation on soil enzyme activities and stoichiometry

Abstract As a crucial strategy for sustainable agricultural production, green manure-crop rotation can regulate soil nutrient cycling and decrease the reliance on nitrogen fertilizers. However, we still lack a comprehensive understanding of the changes in soil eco-enzyme activities, microbial metabolism, and nutrient limitations caused by leguminous green manure crop rotation. Here, we conducted field experiments of leguminous green manure-crop rotation across China to analyze soil extracellular enzyme activities, specifically β-glucosidase (BG), N-acetyl-β-D-glucosaminidase (NAG), leucine aminopeptidase (LAP), and acid phosphatase (AP). The study revealed that long-term green manure-crop rotation increased carbon and nitrogen accumulation in farmland, with a significant average increase of 20.1% and 36.4% in BG, AP enzyme activities in topsoil, while showing a decrease in ln(NAG+LAP):ln(AP) ratios. The ratios of ln(BG):ln(NAG+LAP) and ln(NAG+LAP):ln(AP) in soil across various regions were typically below 1:1, indicating that soil microbial activity is more constrained by nitrogen and phosphorus nutrients rather than by carbon. Precipitation, temperature, soil total carbon, and total nitrogen were identified as key environmental factors for extracellular enzyme activities and stoichiometric ratios. Our study highlights that the green manure-crop rotation alleviates nitrogen limitation while enhancing phosphorus limitation, and is closely related to the accumulation of total carbon and nitrogen in the soil.

Sorghum landraces perform better than a commonly used cultivar under terminal drought, especially on sandy soil

Landraces of sorghum [Sorghum bicolor (L.) Moench] have a high potential for drought adaptations to increasingly extreme climates. We investigated the performance of five sorghum genotypes (four landraces and one commonly grown elite line) under water-limited conditions. Plants were grown until maturity in field-like columns on soils of four textures (silty clay, sandy loam, loamy sand, sand), which were dried during flowering stage down to 30 % usable field capacity. Plant transpiration, physiological characteristics, and yield were measured. For most of the measured parameters, the interaction between genotypes and soils was statistically significant. Alongside the gradient in available water between soils, plants had the highest total transpiration, transpiration efficiency (TE), harvest index (HI), and nutrient uptake in silty clay, steadily reduced towards soils with higher sand content. Especially in sandy soil, all measured plant performance parameters were significantly reduced compared to the other soils. There was a significant negative relationship between later flowering time and HI. While the elite cultivar M35–1 showed the highest TE, it suffered from late flowering and yield loss on all soils, especially when growing on sandy soil. The landraces IS 29914 and IS 8348 had a stable HI irrespective of their lowest TE. The shorter the plant, the better it coped with water and nutrient limitation and high transpiration efficiency was not connected to water conservation. The study overall emphasizes the high potential of sorghum landraces to overcome more extreme droughts as imposed by climate change. It also underlines the importance and strong interaction effect of soil texture on plant performance and transpiration efficiency, which is crucial to be considered in crop production. This outlines that specifically regions with sandy soils, characterized by low water-holding capacities, need genotypes that efficiently utilize the limited available water and nutrient resources – a genetic potential hidden in many landraces.

Distinct ecological niches and community dynamics: understanding free-living and particle-attached bacterial communities in an oligotrophic deep lake.

Oligotrophic deep-water lakes are unique and sensitive ecosystems with limited nutrient availability. Understanding bacterial communities within these lakes is crucial for assessing ecosystem health, biogeochemical cycling, and responses to environmental changes. In this study, we investigated the seasonal and vertical dynamics of both free-living (FL) and particle-attached (PA) bacteria in Lake Fuxian, a typical oligotrophic deep freshwater lake in southeast China. Our findings revealed distinct seasonal and vertical dynamics of FL and PA bacterial communities, driven by similar physiochemical environmental factors. PA bacteria exhibited higher α- and β-diversity and were enriched with Proteobacteria, Cyanobacteria, Firmicutes, Patescibacteria, Planctomycetota, and Verrucomicrobiota, while FL bacteria were enriched with Actinobacteria and Bacteroidota. FL bacteria showed enrichment in putative functions related to chemoheterotrophy and aerobic anoxygenic photosynthesis, whereas the PA fraction was enriched with intracellular parasites (mainly contributed by Rickettsiales, Chlamydiales, and Legionellales) and nitrogen metabolism functions. Deterministic processes predominantly shaped the assembly of both FL and PA bacterial communities, with stochastic processes playing a greater role in the FL fraction. Network analysis revealed extensive species interactions, with a higher proportion of positively correlated edges in the PA network, indicating mutualistic or cooperative interactions. Cyanobium, Comamonadaceae, and Roseomonas were identified as keystone taxa in the PA network, underscoring potential cooperation between autotrophic and heterotrophic bacteria in organic particle microhabitats. Overall, the disparities in bacterial diversity, community composition, putative function, and network characteristics between FL and PA fractions highlight their adaptation to distinct ecological niches within these unique lake ecosystems.IMPORTANCEUnderstanding the diversity of microbial communities, their assembly mechanisms, and their responses to environmental changes is fundamental to the study of aquatic microbial ecology. Oligotrophic deep-water lakes are fragile ecosystems with limited nutrient resources, rendering them highly susceptible to environmental fluctuations. Examining different bacterial types within these lakes offers valuable insights into the intricate mechanisms governing community dynamics and adaptation strategies across various scales. In our investigation of oligotrophic deep freshwater Lake Fuxian in China, we explored the seasonal and vertical dynamics of two bacterial types: free-living (FL) and particle-attached (PA). Our findings unveiled distinct patterns in the diversity, composition, and putative functions of these bacteria, all shaped by environmental factors. Understanding these subtleties provides insight into bacterial interactions, thereby influencing the overall ecosystem functioning. Ultimately, our research illuminates the adaptation and roles of FL and PA bacteria within these unique lake environments, contributing significantly to our broader comprehension of ecosystem stability and health.

Carbon and Nutrient Limitations of Microbial Metabolism in Xingkai Lake, China: Abiotic and Biotic Drivers.

Microbial communities are crucial for water quality and biogeochemical cycling in freshwaters. Microbes secrete extracellular enzymes to decompose organic matter for their needs of nutrients and scarce elements. Yet, there is a lack of knowledge on microbial metabolic limitations in freshwaters, especially in lake sediments. Here, we examined the carbon, nitrogen, and phosphorus-acquiring extracellular enzyme activities and the bacterial and fungal communities of 30 sediments across Xingkai Lake, the largest freshwater lake in Northeast Asia. We further analyzed the microbial metabolic limitations via extracellular enzyme stoichiometry and explored the direct and indirect effects of abiotic and biotic factors on the limitations. We found that microbial metabolisms were primarily limited by phosphorus in Xingkai Lake. For instance, microbial carbon and phosphorus limitations were closely correlated to abiotic factors like water depth, total dissolved solids, sediment total carbon, and conductivity. The metabolic limitations were also affected by biotic factors, such as showing positive relationships with the alpha and beta diversity of bacteria, and with the beta diversity of fungi. In addition, community compositions of bacteria and fungi were mainly correlated to abiotic factors such as total carbon and dissolved organic carbon, respectively. Collectively, microbial metabolic limitations were affected directly or indirectly by abiotic factors and microbial communities. Our findings indicate that microbial metabolic limitations are not only driven by bacteria and fungi but also by abiotic factors such as water depth and total nitrogen, and thus provide empirical evidence for effective management of freshwater lakes under climate warming and intensified human activities.

Distinct microbial nitrogen cycling processes in the deepest part of the ocean.

The metabolic features and adaptation strategies of the nitrogen cycling microorganisms in the deepest part of the ocean are largely unknown. This study revealed that anammox bacteria might perform aerobic respiration in response to nutrient limitation or O2 fluctuations in the Mariana Trench sediments. Meanwhile, an abundant alkane-oxidizing Ketobacter species could fix N2 in hadal seawater. This study provides new insights into the roles of hadal microorganisms in global nitrogen biogeochemical cycles. It substantially expands our understanding of the microbial life in the largely unexplored deepest part of the ocean.

Long-term agricultural cultivation decreases microbial nutrient limitation in coastal saline soils

Soil enzyme activities are pivotal for diverse biochemical processes and are sensitive to land use changes. They can indicate soil microbial nutrient limitations. Nonetheless, the mechanism governing the response of soil microbial nutrient limitation to land use alterations in coastal regions remains elusive. We assessed soil nutrients, microbial biomass, and extracellular enzyme activities across various land use types—natural (wasteland and woodland) and agricultural (farmland and orchard)—in the Hangzhou Bay area, China. All four land use types experience co-limitation by carbon (C) and phosphorus (P). However, the extent of microbial resource limitations varies among them. Long-term agricultural practices diminish microbial C and P limitations in farmland and orchard soils compared to natural soils, as evidenced by lower ecoenzymatic C:N ratios and vector lengths, alongside higher microbial carbon use efficiency (CUE). Soil nutrient stoichiometric ratios and CUE are primary factors influencing microbial C and P limitations. Thus, fostering appropriate land use and management practices proves imperative to regulate soil nutrient cycles and foster the sustainable management of coastal areas.

Productivity and health of soil cultivated with forage cactus (Opuntia cochenillifera (L.) Mill.) with combined use of topsoil and biochar

Agricultural production in semi-arid environments represents a significant challenge, as these are areas that have soils with limited nutrient availability and scarcity of precipitation, which require adaptive and innovative strategies. The application of biochar to improve soil quality and increase productivity has been well studied. However, there is still a gap regarding the use of biochar with the technique of incorporating different topsoils on plant development and soil health. This technique has emerged as an alternative for producers to increase soil fertility. This technique is emerging as an alternative for producers to enhance soil fertility. The hypothesis of the present study is that the use of biochar associated with the topsoil technique increases the productivity and yield of cactus, mainly by changing the properties of the soil and its microbiological interactions. To test this hypothesis, we used different sources of biochar (bean husk, coffee grounds and soursop residue) in association with two types of topsoil (Acrisol and Luvisol). Our analyzes revealed changes on plants development, chemical and microbiological soil attributes. The topsoil technique significantly interfered with mean cladode length (COM), stem diameter (DI), plant height (AL), pH, Na+, K+ and urease enzymatic activity, while biochar had a significant effect on microbial respiration rate. In general, our results expand the knowledge about the use of biochar associated with topsoil, suggesting it as a promising, low-cost way that guarantees the conservation and health of the agroecosystem, contributing with important information for the development of alternative technologies to conventional ones.

Response of soil microbial homeostasis to soil ecological stoichiometric balance in a World Natural Heritage area

Soil microbial biomass stoichiometry homeostasis is essential for microorganism survival and ecosystem stability. Despite its importance, research on soil microbial homeostasis in Natural World Heritage Sites (NWHS) is lacking. This study analyzed ecological stoichiometry and microbial homeostasis in surface (0–20 cm) and subsurface (20–40 cm) soils across various vegetation types in Fanjing Mountain, an NWHS in China. The objective was to explore microbial homeostasis in relation to soil ecological stoichiometry and identify key influencing factors. Results indicated that microbial biomass stoichiometry in surface soil is higher than in subsurface soil for 5 vegetation types, mirroring nutrient stoichiometry but contrasting enzyme stoichiometry. Vector length (VL) suggests higher C limitation in subsurface soil for all vegetation types, while vector angle (VA) shows P limitation in surface soil of certain types and N limitation in subsurface soil across all types. Random forest analysis revealed that the microbial carbon-nitrogen ratio (MB C/N) was mainly contributed by C/N (14.11 %), SOC (12.31 %), pH (10.52 %), NH4+-N, SWC, NO3--N in the surface soil, and NO3--N (15.74 %), altitude, SWC, SOC, C/N in the subsurface soil, whereas for the microbial carbon-phosphorus ratio (MB C/P), altitude (12.16 %), SWC (9.86 %), and AP were the main contributing factors in the surface soil, and in the subsurface soil, altitude (10.49 %), C/P, SWC, SOC, and TP. This study provides insights into ecological stoichiometry, homeostasis, and nutrient limitations in Fanjing Mountain, aiding vegetation nutrient balance management in NWHS.

Multi-omic characterization of antibody-producing CHO cell lines elucidates metabolic reprogramming and nutrient uptake bottlenecks

Characterizing the phenotypic diversity and metabolic capabilities of industrially relevant manufacturing cell lines is critical to bioprocess optimization and cell line development. Metabolic capabilities of production hosts limit nutrient and resource channeling into desired cellular processes and can have a profound impact on productivity. These limitations cannot be directly inferred from measured data such as spent media concentrations or transcriptomics. Here, we present an integrated multi-omic analysis pipeline combining exo-metabolomics, transcriptomics, and genome-scale metabolic network analysis and apply it to three antibody-producing Chinese Hamster Ovary cell lines to identify reprogramming features associated with high-producing clones and metabolic bottlenecks limiting product formation in an industrial bioprocess. Analysis of individual datatypes revealed a decreased nitrogenous byproduct secretion in high-producing clones and the topological changes in peripheral metabolic pathway expression associated with phase shifts. An integrated omics analysis in the context of the genome-scale metabolic model elucidated the differences in central metabolism and identified amino acid utilization bottlenecks limiting cell growth and antibody production that were not evident from exo-metabolomics or transcriptomics alone. Thus, we demonstrate the utility of a multi-omics characterization in providing an in-depth understanding of cellular metabolism, which is critical to efforts in cell engineering and bioprocess optimization.

Culture of Bovine Aortic Endothelial Cells in Galactose Media Enhances Mitochondrial Plasticity and Changes Redox Sensing, Altering Nrf2 and FOXO3 Levels.

Understanding the complex biological processes of cells in culture, particularly those related to metabolism, can be biased by culture conditions, since the choice of energy substrate impacts all of the main metabolic pathways. When glucose is replaced by galactose, cells decrease their glycolytic flux, working as an in vitro model of limited nutrient availability. However, the effect of these changes on related physiological processes such as redox control is not well documented, particularly in endothelial cells, where mitochondrial oxidation is considered to be low. We evaluated the differences in mitochondrial dynamics and function in endothelial cells exposed to galactose or glucose culture medium. We observed that cells maintained in galactose-containing medium show a higher mitochondrial oxidative capacity, a more fused mitochondrial network, and higher intercellular coupling. These factors are documented to impact the cellular response to oxidative stress. Therefore, we analyzed the levels of two main redox regulators and found that bovine aortic endothelial cells (BAEC) in galactose media had higher levels of FOXO3 and lower levels of Nrf2 than those in glucose-containing media. Thus, cultures of endothelial cells in a galactose-containing medium may provide a more suitable target for the study of in vitro mitochondrial-related processes than those in glucose-containing media; the medium deeply influences redox signaling in these cells.