Calcareous grasslands are rich in biodiversity and thus receive much attention in nature conservation. In such grasslands, the formation of moss layers is perceived as a management problem. However, its impacts on the community level are complex, as not only inhibition but also facilitation of vascular plant recruitment occur. Possible filters of recruitment are shading by mosses, isolation from soil resources and the resulting desiccation. To understand how seed size and shape moderate moss effects, a combined glasshouse and field experiment was conducted in southern Germany. Seeds of 14 species from calcareous grasslands were sown either on top or underneath a moss layer, or on bare soil without moss. We determined the total number of emerged and established seedlings, i.e. the ones that survived until the end of the experiment. Both measures were reduced for most species sown on moss, while mortality was slightly enhanced by moss presence. Seed size explained a significant proportion of the moss effects on plant recruitment. Inhibitive effects on recruitment increased with seed size when seeds were placed on top of moss. When germinating underneath moss, the effect on emergence changed from negative in small-seeded plant species to positive in large-seeded species, but this effect was insignificant for establishment. The positive response in large seeds was probably due to their higher moisture requirements for imbibition, and lower dependency on light for germination. However, moss-seed-interactions were not affected by seed shape. Seedling establishment of plants with large seeds strongly depended on their initial position in moss, while small-seeded species showed no effect. Hence, moss layers constitute a selective recruitment filter by modifying seed penetration and hence germination conditions. This effect could increase beta diversity of vascular plant species in calcareous grasslands, and thus conservation should aim at intermediate and patchy moss abundance.