A typical structured light field system consists of a light field camera and a pattern projector. By combining Fringe Projection Profilometry and light field imaging technology, the phase distribution characteristics of each position and each angle of the scene under test could be obtained, thus providing more information dimensions, and therefore improving the robustness and dynamic range of three-dimensional (3D) measurement. System calibration is a decisive factor for high-efficiency and high precision measurement. However, the complicated structure and working method make the calibration of structured light field system usually costly and cumbersome. In this paper, we propose a hybrid calibration approach combining the flexibility of the stereo vision method and high precision characteristics of the phase-coordinate mapping method. The feasibility of the proposed method has been verified in actual experiments with typical 3D targets.