LIDC Dataset Research Articles

3-D Convolutional Neural Networks for Automatic Detection of Pulmonary Nodules in Chest CT.

Deep two-dimensional (2-D) convolutional neural networks (CNNs) have been remarkably successful in producing record-breaking results in a variety of computer vision tasks. It is possible to extend CNNs to three dimensions using 3-D kernels to make them suitable for volumetric medical imaging data such as CT or MRI, but this increases the processing time as well as the required number of training samples (due to the higher number of parameters that need to be learned). In this paper, we address both of these issues for a 3-D CNN implementation through the development of a two-stage computer-aided detection system for automatic detection of pulmonary nodules. The first stage consists of a 3-D fully convolutional network for fast screening and generation of candidate suspicious regions. The second stage consists of an ensemble of 3-D CNNs trained using extensive transformations applied to both the positive and negative patches to augment the training set. To enable the second stage classifiers to learn differently, they are trained on false positive patches obtained from the screening model using different thresholds on their associated scores as well as different augmentation types. The networks in the second stage are averaged together to produce the final classification score for each candidate patch. Using this procedure, our overall nodule detection system called DeepMed is fast and can achieve 91% sensitivity at 2 false positives per scan on cases from the LIDC dataset.

Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation.

Accurate lung nodule segmentation from computed tomography (CT) images is of great importance for image-driven lung cancer analysis. However, the heterogeneity of lung nodules and the presence of similar visual characteristics between nodules and their surroundings make it difficult for robust nodule segmentation. In this study, we propose a data-driven model, termed the Central Focused Convolutional Neural Networks (CF-CNN), to segment lung nodules from heterogeneous CT images. Our approach combines two key insights: 1) the proposed model captures a diverse set of nodule-sensitive features from both 3-D and 2-D CT images simultaneously; 2) when classifying an image voxel, the effects of its neighbor voxels can vary according to their spatial locations. We describe this phenomenon by proposing a novel central pooling layer retaining much information on voxel patch center, followed by a multi-scale patch learning strategy. Moreover, we design a weighted sampling to facilitate the model training, where training samples are selected according to their degree of segmentation difficulty. The proposed method has been extensively evaluated on the public LIDC dataset including 893 nodules and an independent dataset with 74 nodules from Guangdong General Hospital (GDGH). We showed that CF-CNN achieved superior segmentation performance with average dice scores of 82.15% and 80.02% for the two datasets respectively. Moreover, we compared our results with the inter-radiologists consistency on LIDC dataset, showing a difference in average dice score of only 1.98%.

3D Convolutional Neural Network for Automatic Detection of Lung Nodules in Chest CT.

Deep convolutional neural networks (CNNs) form the backbone of many state-of-the-art computer vision systems for classification and segmentation of 2D images. The same principles and architectures can be extended to three dimensions to obtain 3D CNNs that are suitable for volumetric data such as CT scans. In this work, we train a 3D CNN for automatic detection of pulmonary nodules in chest CT images using volumes of interest extracted from the LIDC dataset. We then convert the 3D CNN which has a fixed field of view to a 3D fully convolutional network (FCN) which can generate the score map for the entire volume efficiently in a single pass. Compared to the sliding window approach for applying a CNN across the entire input volume, the FCN leads to a nearly 800-fold speed-up, and thereby fast generation of output scores for a single case. This screening FCN is used to generate difficult negative examples that are used to train a new discriminant CNN. The overall system consists of the screening FCN for fast generation of candidate regions of interest, followed by the discrimination CNN.

Lung Cancer Detection Using Fusion of Medical Knowledge and Content Based Image Retrieval for LIDC Dataset

Lung Cancer Detection Using Fusion of Medical Knowledge and Content Based Image Retrieval for LIDC Dataset

Shape and texture based novel features for automated juxtapleural nodule detection in lung CTs.

Lung cancer is one of the types of cancer with highest mortality rate in the world. In case of early detection and diagnosis, the survival rate of patients significantly increases. In this study, a novel method and system that provides automatic detection of juxtapleural nodule pattern have been developed from cross-sectional images of lung CT (Computerized Tomography). Shape-based and both shape and texture based 7 features are contributed to the literature for lung nodules. System that we developed consists of six main stages called preprocessing, lung segmentation, detection of nodule candidate regions, feature extraction, feature selection (with five feature ranking criteria) and classification. LIDC dataset containing cross-sectional images of lung CT has been utilized, 1410 nodule candidate regions and 40 features have been extracted from 138 cross-sectional images for 24 patients. Experimental results for 10 classifiers are obtained and presented. Adding our derived features to known 33 features has increased nodule recognition performance from 0.9639 to 0.9679 AUC value on generalized linear model regression (GLMR) for 22 selected features and being reached one of the most successful results in the literature.

The ${LoG}$ Characteristic Scale: A Consistent Measurement of Lung Nodule Size in CT Imaging

Nodule growth as observed in computed tomography (CT) scans acquired at different times is the primary feature to malignancy of indeterminate small lung nodules. In this paper, we propose the estimation of nodule size through a scale-space representation which needs no segmentation and has high intra- and inter-operator reproducibility. Lung nodules usually appear in CT images as blob-like patterns and can be analyzed in the scale-space by Laplacian of Gaussian ( LoG ) kernels. For each nodular pattern the LoG scale-space signature was computed and the related characteristic scale adopted as measurement of nodule size. Both in vitro and in vivo validation of LoG characteristic scale were carried out. In vitro validation was done by 40 nondeformable phantoms and 10 deformable phantoms. A close relationship between the characteristic scale and the equivalent diameter, i.e., the diameter of the sphere having the same volume of nodules, (Pearson correlation coefficient was 0.99) and, for nodules undergoing little deformations (obtained at constant volume), small variability of the characteristic scale was observed. The in vivo validation was performed on low and standard-dose CT scans collected from the ITALUNG screening trial (86 nodules) and from the LIDC public data set (89 solid nodules and 40 part-solid nodules or ground-glass opacities). The Pearson correlation coefficient between characteristic scale and equivalent diameter was 0.83-0.93 for ITALUNG and 0.68-0.83 for LIDC data set. Intra- and inter-operator reproducibility of characteristic scale was excellent: on a set of 40 lung nodules of ITALUNG data, two radiologists produced identical results in repeated measurements. The scan-rescan variability of the characteristic scale was also investigated on 86 two-year-stable solid lung nodules (each one observed, on average, in four CT scans) identified in the ITALUNG screening trial: a coefficient of repeatability of about 0.9 mm was observed. Experimental evidence supports the clinical use of the LoG characteristic scale to measure nodule size in CT imaging.