Aquatic ecosystems in Nigeria face significant environmental challenges because of anthropogenic activities, resulting in heavy metal contamination. Fish body weight and length and heavy metal concentrations in African pike (Hepsetus odoe) from Alape River, Igbokoda, Ilaje Local Government Area of Ondo State, Southwestern Nigeria, were investigated. Copper (Cu), Cadmium (Cd), Iron (Fe), Manganese (Mn), Nickel (Ni), and Lead (Pb) concentrations were measured in the gills, intestines, and trunks of the fish over six months (i.e., from May 2022 to October 2022) using an atomic absorption spectrophotometer (Buck Scientific’s 210VGP). Significant variations in heavy metal concentrations were observed across different months and organs. The order of concentrations for the six months, from highest to lowest, was Fe (2.26 mg/kg) > Ni (0.37 mg/kg) > Cu (0.23 mg/kg) > Mn (0.27 mg/kg) > Pb (0.05 mg/kg) > Cd (0.01 mg/kg). Higher concentrations were generally observed in the gills and intestines in May and June, whereas elevated levels were observed in the gills in September and October. These concentrations were compared with the maximum permissible limits established by the Food and Agriculture Organization and the World Health Organization for fish consumption, and all measured heavy metal concentrations were determined to be below the permissible limits. Body weight ranged from 172 to 362 g, and length ranged from 15.7 cm to 23.5 cm. The regression coefficient (b) ranged from − 0.134 to 0.204, indicating a relatively weak length–weight relationship. The condition factor (K) exhibited variations in the overall health and well-being of the fish. Based on these findings, the consumption of African pike from the Alape River is currently considered safe for humans, regardless of fish size, with all of the heavy metal concentrations within the permissible limits. However, continuous monitoring is crucial to ensure the ongoing safety of aquatic ecosystems and human health.