The ophiolitic mélange and granitic intrusions along the Qift‒Quseir transect in the Central Eastern Desert (CED) of Egypt are parts of the Egyptian Nubian Shield (ENS), which is the northern segment of the East African Orogeny (EAO). The Arabian-Nubian Shield (ANS) is the longest Neoproterozoic belt on Earth, and it was formed during the East and West Gondwanaland collisions within the framework of the EAO. The ANS basement rocks were developed during three distinct phases of magmatic activity: the island arc and syn-collisional phases, identifying a compressional tectonic regime, and a post-collisional phase that identifies changing the tectonic regime into an extensional type. The geochronological assessment of these magmatic activities is essential for understanding the regional geology and tectonic development of the ANS. In our study, we dated different rock units along the Qift‒Quseir transect and revealed ages ranging from the Late Tonian (820 ± 8 Ma) to the Late Ediacaran (563 ± 4 Ma). These ages were associated with three different magmatic pulses: (1) a seafloor spreading and island arc phase (ophiolite and related rocks), represented by sample QQ05, which was dated from 820 ± 8 Ma; (2) a syn-collisional phase, represented by samples QQ08 and QQ10, dated from 733 ± 10 Ma and 729 ± 10 Ma, respectively; and (3) a post-collisional phase, represented by all the other samples, dated from the Ediacaran at 603 ± 9 Ma to 563 ± 5 Ma. These results showed that the post-collisional phase was dominant, especially in terms of the alkali-feldspar granites, relative to ophiolitic rocks, and the syn-collisional granites in the CED. Initiation of the Dokhan Volcanic eruptions at 639 ± 2 Ma gave us the date of the compressional-to-extensional tectonic transition setting, and the post-collisional tensional regime was activated at 603 ± 9 Ma. Additionally, we identified evidence of local magmatic sources by dating 11 grains of Paleo- to Meso-Proterozoic xenocrysts with ages ranging from 1876 ± 18 to 1070 ± 13 Ma (i.e., components of the pre-Arabian-Nubian Shield).