Two-dimensional gel electrophoresis of Drosophila proteins from heat-shocked salivary glands resolves the major heat shock proteins into over 14 different molecular weight species. Most of these proteins are in one of the six molecular weight classes previously reported for heat shock proteins: 83,000, 70,000, 68,000, 34,000, 26,000 to 28,000 and 21,000 to 23,000 M r. A few minor proteins, which range in molecular weight from 44,000 to 66,000, are also observed. The 70,000 M r heat shock proteins are resolved into seven slightly different molecular weight groups; within each group, there are several isoelectric point variants. The 83,000, 34,000, and 68,000 M r proteins are single molecular weight species, although there are three isoelectric point variants of the 68,000 M r protein. The 26,000 to 28,000 M r proteins separate into eight major components in two different molecular weight groups plus a run of basic proteins that probably are a result of post-translational modifications of the major proteins. The 21,000 to 23,000 M r proteins consist of three components in two different molecular weight groups. Separation of heat shock proteins from two Drosophila cell lines shows a similar pattern of multiple components, although some of the minor variants visible in salivary glands are not synthesized in the cell lines. In vitro translation of mRNA from heat-shocked salivary glands in a reticulocyte lysate results in a pattern of multiple heat shock proteins nearly identical to that observed in vivo.