Investigating the microstructural characteristics of metallic glasses (MGs) under high-energy irradiation is of great importance for their industrial applications. In this study, molecular dynamics simulations of FeCuNi MG under neutron irradiation have been carried out, and the microstructural evolution has been systematically investigated by the largest standard cluster analysis (LaSCA). It is found that both topologically close-packed (TCP) and icosahedral structures in MG exhibit significant self-healing ability under irradiation. However, the TCP structures are quantitatively more dominant and thus can more rationally explain the structural self-healing mechanism of irradiated MG. Furthermore, during the irradiation process, the large-sized TCP clusters in the MG split into many small-sized clusters. However, due to the inherent self-healing ability of the TCP structures, these split clusters recombine into large-sized clusters after the irradiation ends. In summary, the results of this study are expected to provide theoretical guidance for the development of new high-performance reactor materials.