The ability to colonize new habitat is essential for wild populations affected by disturbance or other forms of habitat change. For aquatic insects in small streams, overland flight is an important strategy for dispersal when barriers to in-stream migration exist and when populations are isolated in upland habitats. Two Ozark-endemic water beetles (Heterosternuta sulphuria and Heterosternuta phoebeae) have shown little overlap in distributions, with the former frequently occurring in small upland watersheds and the latter occurring in aquatic habitats farther downstream in larger watersheds. Because H. sulphuria has been associated with perennial aquatic habitats, we hypothesized that H. sulphuria individuals could exhibit low capacity for flight, thereby affecting population distributions over time. Laboratory flight observations showed that zero individuals of H. sulphuria flew (n = 67), whereas 17 of 76 individuals of H. phoebeae were observed to fly. Stream habitat drying experiments provided further evidence of the weak capacity for flight and overland migration of H. sulphuria, with low probabilities of survivorship in microhabitats exposed to drying. Weak flight capacity and apparent intolerance to habitat drying have important implications for the evolutionary history and conservation of H. sulphuria in small Ozark streams exposed to variable flow regimes and stream margins vulnerable to disturbances.