Abstract Two-dimensional (2D) layered materials without centrosymmetry, such as GaSe, have emerged as promising novel optical materials due to large second-order nonlinear susceptibilities. However, their nonlinear responses are severely limited by the short interaction between the 2D materials and light, which should be improved by coupling them with photonic structures with strong field confinement. Here, we theoretically design photonic crystal circular Bragg gratings (CBG) based on hole gratings with a quality factor as high as Q = 8 × 103, a mode volume as small as V = 1.18 (λ/n)3, and vertical emission of light field in silicon nitride thin film platform. Experimentally, we achieved a Q value up to nearly 4 × 103, resulting in a 1,200-fold enhancement of second harmonic generation from GaSe flakes with a thickness of 50 nm coupling to the CBG structures under continuous-wave excitation. Our work endows silicon-based photonic platforms with significant second-order nonlinear effect, which is potentially applied in on-chip quantum light sources and nonlinear frequency conversion.