Riparian forests serve as important habitats that enhance diversity of bird species and perform crucial ecosystem functions in tropical forest landscapes. We compared the community structure (represented by functional trait composition) and diversity (represented by Shannon index) of birds in riparian and upland zones in a semi-continuous primary rainforest in Papua New Guinea. Distance sampling was applied to provide unbiased abundance estimates. Bird community structure was examined by principal coordinate analysis of neighbour matrices (PCNM) in the Canoco 5 program. Analysis of diversity was performed using mixed-effects linear models in R 3.5.1. Species diversity was marginally higher in riparian zones (P = 0.065). Community structure differed significantly in riparian and upland zones (P = 0.008). Invertivorous and omnivorous birds preferred riparian habitats but frugivorous and nectivorous birds avoided riparian zones. Birds in riparian zones were characterised by preferences for high-density forest interior but birds in upland areas mostly occupied exposed canopy layers. Beak dimensions were greater in riparian zones but body mass, and lengths of wing and tarsus were greater in upland zones. Species found in riparian zones had greater geographical ranges than those in upland zones. Our results highlight the adaptability of a rainforest bird community to natural disturbances characterised by localised river flooding and riverbank erosion. For example, small invertivorous and omnivorous birds can navigate disturbed vegetation and exploit river-associated invertebrate food supply while moving to alternative food sources during intensive flooding. On the other hand, large frugivorous and nectarivorous birds are mostly sedentary and require an intact canopy layer for foraging, responding poorly to changes in vegetation structure. By moving beyond species-level relationships when examining bird community structure, we were able to better interpret and connect our findings with other studies on bird communities in tropical rainforest.