Large Amounts Of Organic Acids Research Articles

Exploring the Organic Acid Secretion Pathway and Potassium Solubilization Ability of Pantoea vagans ZHS-1 for Enhanced Rice Growth

Soil potassium deficiency is a common issue limiting agricultural productivity. Potassium-solubilizing bacteria (KSB) show significant potential in mitigating soil potassium deficiency, improving soil quality, and enhancing plant growth. However, different KSB strains exhibit diverse solubilization mechanisms, environmental adaptability, and growth-promoting abilities. In this study, we isolated a multifunctional KSB strain ZHS-1, which also has phosphate-solubilizing and IAA-producing capabilities. 16S rDNA sequencing identified it as Pantoea vagans. Scanning electron microscopy (SEM) showed that strain ZHS-1 severely corroded the smooth, compact surface of potassium feldspar into a rough and loose state. The potassium solubilization reached 20.3 mg/L under conditions where maltose was the carbon source, sodium nitrate was the nitrogen source, and the pH was 7. Organic acid metabolism profiling revealed that strain ZHS-1 primarily utilized the EMP-TCA cycle, supplemented by pathways involving pantothenic acid, glyoxylic acid, and dicarboxylic acids, to produce large amounts of organic acids and energy. This solubilization was achieved through direct solubilization mechanisms. The strain also secreted IAA through a tryptophan-dependent metabolic pathway. When strain ZHS-1 was inoculated into the rhizosphere of rice, it demonstrated significant growth-promoting effects. The rice plants exhibited improved growth and root development, with increased accumulation of potassium and phosphorus. The levels of available phosphorus and potassium in the rhizosphere soil also increased significantly. Additionally, we observed a decrease in the relative abundance of Actinobacteria and Proteobacteria in the rice rhizosphere soil, while the relative abundance of genera associated with acid production and potassium solubilization, such as Gemmatimonadota, Acidobacteria, and Chloroflexi, as well as Cyanobacteria, which are beneficial to plant growth, increased. These findings contribute to a deeper understanding of the potassium solubilization mechanisms of strain ZHS-1 and highlight its potential as a plant growth-promoting rhizobacteria.

Separation of fluoride in the presence of large amounts of organic acids by ion chromatography

ABSTRACT An ion chromatography (IC) method for the separation of fluoride in presence of large concentrations of organic acid anions was developed with a view to determine trace level concentration of fluoride in plant samples. Present study deals with determination of fluoride in dry black gram seeds. Pyrohydrolysis was employed for extracting fluoride from the seeds. Organic acid anions are produced during pyrohydrolysis of seeds/plant materials and these organic anions show similar retention behavior of fluoride in IC. Separation of fluoride from organic acids and common anions was investigated. An IC method involving the appropriate dilution of pyrohydrolysis distillate of the sample followed by a large volume injection through a pre-concentrator column is proposed to circumvent the interference due to organic acids. Fluoride recovery of the pre-concentrator column is found to be more than 90%. The method provides a precision better than 7% (RSD). The limit of detection of the method is 0.5ppmw whereas the LOD for fluoride by IC method alone is 10 ppb. Results obtained are validated by analyzing the samples by using fluoride ion selective electrode method.

Can acid produced from probiotic bacteria alter the surface roughness, microhardness, and elemental composition of enamel? An in vitro study

Probiotics are live microorganisms that upon administration in adequate amounts provide various health benefits to the host. Probiotics are “lactic acid-producing bacteria” as they release large amounts of organic acids, particularly lactic acids, in their surrounding environment. Although the acids produced by probiotics are beneficial for gastrointestinal and vaginal health, the acidogenic nature of probiotics has raised concerns among dental professionals, especially concerning their effect on the enamel and dentin. Previous studies have found that probiotics can lower the pH of the saliva and cause essential elements like Calcium and Phosphorus to leach from the enamel. This can alter the surface topography of enamel and increase the risk of enamel defects. Studies have also noted that probiotic bacteria can replace cariogenic bacteria and lower the risk of tooth decay. However, the effect of acid produced by probiotics on the enamel surface remains unclear. Hence, the present study aims to evaluate the effect of probiotics on the surface roughness, microhardness, and elemental composition of enamel compared to 0.1 M Lactic acid (demineralizing agent). Twenty enamel sections were randomly divided into groups and subjected to a pH cycling model using a probiotic suspension and 0.1 M lactic acid. The changes in the surface roughness, microhardness, surface morphology, and elemental composition of the enamel with regard to Carbon, Oxygen, Sodium, Hydrogen, Magnesium, Phosphorus, Fluoride, Chlorine, and Calcium of the enamel were evaluated before and after the emersion in both the groups. The results showed a significant increase in the mean surface roughness in the probiotic group before and after the exposure. The microhardness of the enamel decreased along with altered arrangement of the enamel prisms, increased striations, scratch marks, and pitting after exposure to the probiotic group. A decrease in the atomic/weight% for Calcium, Phosphorous, Fluoride, Aluminium, and Oxygen and an increase in the weight/atomic% for Carbon, Nitrogen, and Sodium were noted compared to the baseline in the probiotic solution. The results in the probiotic group were comparable to the 0.1 M lactic acids. The pH changed from 5.78 to 3.06 at the end of 24 h in the probiotic group. Based on these findings, we conclude that exposure to probiotics can affect microhardness and surface roughness and cause leaching of essential elements like Calcium and Phosphorous from the enamel.

Environment microorganism and mature daqu powder shaped microbial community formation in mechanically strong-flavor daqu

Daqu is the fermenting starter in Chinese Baijiu brewing, contributing functional microorganisms, enzymes and flavor substances to the grain fermentation. Traditional daqu is produced in open environment where environmental factors and microbiota are critical to daqu and Baijiu quality. Mechanization is the direction of Baijiu production development. In this study, we investigated the mechanism of the effect of mechanized environment and manufacturing process on daqu production. Many functional microorganisms (e.g. Acetobacter, lactic acid bacteria and yeast) were distributed in the process environment, including indoor air, tube and equipment surfaces, which contributed to the initial bacterial/fungal composition in daqu (71.62%/28.47%) along with mature daqu powder (21.1%/61.65%). Our results also showed daqu microbiota formation was influenced by both stochastic and deterministic processes. The initial microorganisms produced large amounts of organic acids (19.24 g/kg) and bioheat (58.3 °C) during early fermentation stage, leading to a rapid temperature rise and water loss under the stacking process. Mature daqu powder mainly provided thermophilic microorganisms for fermentation stages during and after temperature rise, including Thermoactinomyces, Thermoascus, Thermomyces, Rhizomucor and Rhizopus, which produced enzymes and amino nitrogen for Baijiu fermentation, also ensuring stable microbiota among process batches. This work revealed the origin of the microbial community of strong-flavor daqu and showed that ecological environment suitable for daqu fermentation was created during the long-term continuous production process by adding mature daqu powder during daqu brick making and sprinkling it in the workshop, by which product quality was guaranteed.

Accumulation Conditions and Pattern of Tight Oil in the Lower Submember of the Fourth Member of the Shahejie Formation in the Damintun Sag, Bohai Bay Basin

To determine the accumulation conditions and pattern of tight oil in oil shales in the Damintun Sag, Bohai Bay Basin, this study investigated the basic geological conditions of the source rocks and reservoirs in the sag using methods such as organic carbon analysis, whole-rock XRD analysis, and field emission scanning electron microscopy. The results show that: (1) The high-quality source rocks in the lower submember of the fourth member of the Shahejie Formation (E2S42) in the Damintun Sag have high organic matter abundance, favorable organic matter types, high hydrocarbon expulsion efficiency, and high fluidity. Therefore, they provide sufficient oil sources for tight oil accumulation.; (2) During the burial of organic-rich shales, the thermal degradation of organic matter produces large amounts of organic acids, which can dissolve carbonate minerals. In this way, secondary pores are formed.; (3) The special microscopic pore structure that connects fractures to pores is the key to the enrichment of tight oil is a key factor for the high oil saturation of pores in oil shales; (4) The breakthrough pressure (up to 100 MPa) and specific surface area of dolomitic mudstones in the E2S42 submember are significantly higher than those in other horizons. As a result, the dolomitic mudstones can effectively seal the underlying tight reservoirs; (5) Compared with the tight oil in tight sandstones, the tight oil in the oil shales in the study area has significantly superior geological conditions for reservoir formation, such as the favorable arrangement of hydrocarbon expulsion channels, low filling resistance, and the presence of reservoir spaces.

Materials for Selective Inhibition of Streptococcus mutans and Progress in Relevant Research

Dental caries is a disease in which chronic progressive destruction of the hard dental tissues occurs under the influence of multiple factors, among which, bacterial infection being the most important one. Dental plaque biofilm is a key factor in the pathogenesis of dental caries. Under normal circumstances, microorganisms within the biofilm maintain a dynamic balance through coordination, competition, and antagonism. However, when the environment changes, the balance in the biofilm will be disrupted, and the number of cariogenic bacteria, especially Streptococcus mutans ( S. mutans), will increase significantly, thereby causing the production of large amounts of organic acids on the tooth surface, tooth demineralization, and the formation of dental caries. Therefore, finding ways to restore the dynamic balance of oral microorganisms through selective inhibition of S. mutans is key to the prevention and treatment of dental caries. Herein, we reviewed the research progress of recent years in the development of materials with selective antibacterial effect, intending to provide references for the further development of drugs for the prevention and treatment of dental caries. Future studies should focus on the following aspects, mechanism, clinical efficacy, chemical modification, and safety, to supplement and make improvements on the existing relevant research, and to promote progress in research and development of drugs for the prevention and treatment of dental caries.

The Study on Diagenetic Characteristics of Coal Measures Sandstone Reservoir in Xishanyao Formation, Southern Margin of the Junggar Basin

The reservoir physical properties, pore types, diagenetic characteristics and reservoir quality controlling effect of the Xishanyao formation coal measure sandstone in the southern margin of the Junggar basin were discussed in this study based on thin section observation, high pressure mercury injection, low-temperature nitrogen adsorption and scanning electron microscope observation. The result shows that the porosity and permeability of the sandstone are generally low with a medium-high texture maturity and low compositional maturity. The sandstone storage space is mainly composed of residual intergranular pores, secondary dissolution pores, inter-crystalline pores and micro-fractures. The diagenetic stage of coal measure sandstone is in the mesodiagenesis A1-A2 stage, and their diagenetic interaction types mainly include compaction, cementation and dissolution. The reservoir quality of the coal measure sandstone deteriorates by compaction due to high matrix content and plastic debris content. Because of the large amounts of organic acids generated during the thermal evolution of the coal measure source rock, the coal measure sandstone suffers from strong dissolution. The secondary dissolution pores formed by the massive dissolution of feldspar, lithic fragments and early carbonate cementation in the sandstone significantly improved the reservoir quality. In the coal measure sandstone, clay mineral cementation is the most developed cementation form, followed by quartz cementation and carbonate cementation. Although kaolinite cementation and dolomite cementation can generate a small number of inter-crystalline pores, cementation deteriorates the reservoir quality. The Xishanyao formation coal measure sandstone formed in a lacustrine-delta environment, and its composition and texture make it susceptible to the influence of compaction and dissolution during diagenesis.

High-concentration COD wastewater treatment with simultaneous removal of nitrogen and phosphorus by a novel Candida tropicalis strain: Removal capability and mechanism

Aerobic and anaerobic continuous stirred-tank reactor (CSTR), up-flow anaerobic sludge blanket (UASB) were set up and inoculated with newly isolated Candida tropicalis. Reactors were operated at high concentrations of chemical oxygen demand (COD) (8000 mg/L), the modified UASB expressed better COD removal rate simultaneously removal of nitrogen and phosphate than other two reactors. Notably, under both aerobic or anaerobic conditions, large amounts of organic acids and alcohol were generated. Transcriptomic analysis showed that carbon metabolism under anaerobic conditions shared the same pathway with aerobic conditions by regulating and inhibiting some functional genes. Experiments utilizing different carbon sources proved that our strain has excellent performances in utilizing organic materials, which were verified by transcriptomic analysis. Finally, the strain was applied to treat four types of sugar-containing wastewaters. Among them, our strain exerts the best removal capability of COD (90%), nitrogen (89%), and phosphate (82%) for brewery wastewater.

Apophysomyces jiangsuensis sp. nov., a Salt Tolerant and Phosphate-Solubilizing Fungus from the Tidelands of Jiangsu Province of China.

A newly isolated phosphate-solubilizing fungus from the topsoil of Spartina alterniflora habitats in Yancheng coastal salt marsh was cultivated. Scanning electron microscopy observation revealed that the sporangia are nearly spherical, peach-shaped, and the spores formed on the top of sporangia. The spores are ellipsoidal with raised white nubbins on the surface. Based on a polyphasic study and the genetic distance analysis referring to the sequence analysis of ITS (ITS1 + 5.8S + ITS2) and 28S rDNA (D1/D2 domains) genes, the novel species belongs to the genus Apophysomyces and is named as A. jiangsuensis. The optimum growth temperature and salinity of the new species were 28 °C and 1.15% NaCl, respectively. A study of its phosphate-solubilizing ability revealed that the fungus had an obvious decomposition effect on lecithin, Ca3(PO4)2, and AlPO3, respectively. The pH of the fermented liquid progressively decreased from 6.85 to 2.27 after 7 days of incubation, indicating that the low molecular weight organic acids excreted into the culture liquor were oxalic, succinic, and malic acids and a trace amount of citric acid. Among these, oxalic acid was the major organic acid, and its amount reached 652.5 mg/L. These results indicated that the main mechanism underlying the dissolved phosphorus was related to the secretion of large amounts of organic acids.

Diagenesis of the Cretaceous glutenite and its control on the reservoir porosity in the Fangzheng depression, Northeast China

The reservoir of glutenite has obvious anisotropy characteristics, so diagenesis has a significant impact on its physical property of the reservoir. In view of unclear control factors for densification of the Cretaceous glutenite reservoir in the Fangzheng depression, the diagenesis type of glutenite reservoir and its impact on the physical property of reservoir in the research area were studied by core analysis, electronic probe analysis, scanning electron microscope (SEM) analysis, X-ray energy spectrum analysis, and X-ray diffraction (XRD) analysis. The results showed that there are four types of diagenesis, compaction, dissolution, cementation, and metasomatism. The glutenite reservoir experienced a relatively strong mechanical compaction, which seriously damaged the original pores of the reservoir, with a decrease of 15.97%. This is the most important cause of the densification of the Cretaceous glutenite reservoir. Due to the injection of other hydrocarbon fluids, a large amount of organic acid entered the reservoir through residual pores and fractures, which promoted the dissolution of minerals such as potassium feldspar, formed secondary pore zone, improved the glutenite reservoir performance, and increased the porosity by 6.79%. The primary and secondary pores are filled by cementation with a porosity reduction of 6.53%, which is another key factor for reservoir densification. Through the analysis of the physical property of glutenite reservoir, it is believed that the high-quality Cretaceous reservoir in the Fangzheng depression is mainly developed in the subaqueous distributary channel in frontal fan delta near the oil-source fault. The frontal fan has a high primary porosity and is the material basis for the formation of the reservoir.

Ni and Cu recovery by bioleaching from the printed circuit boards of mobile phones in non-conventional medium

There is a substantial volume of mobile phone waste every year. Due to the disadvantages of traditional methods, it is necessary to look for biological processes that are more eco-friendly and economical to recover metals from e-waste. Fungi provide large amounts of organic acids and dissolve metals but using sucrose in the medium is not economical. In this paper, the main objective is to find a suitable alternative carbon substrate instead of sucrose for fungi bioleaching of Ni and Cu in printed circuit boards (PCBs) of mobile phones using Penicillium simplicissimum. Four kinds of carbon sources (including sucrose, cheese whey, sugar, and sugar cane molasses) were selected. Also, pH and number of spores in inoculum were optimized by response surface methodology (RSM) for all carbon sources. The results showed the simultaneous maximum recovery of Cu and Ni is not possible. For Cu recovery, sugar is the best economical and simplistic medium instead of sucrose. Maximum recovery of Cu (90%) gained at the pH of 7, 3.3 × 107 spores, and in sugar. The amount of Ni recovery (89%) was highest in molasses, at the pH of 2, and 106 spores. The results proved non-conventional carbon sources improve bioleaching efficiency and the possibility of industrialization.

Tertiary hydrothermal activity and its effect on reservoir properties in the Xihu Depression, East China Sea

Three large-scale episodes of volcanic activity occurred during the Tertiary in the Xihu Depression, located in the East China Sea. Intermediate-felsic magmas intruded along faults and the associated hydrothermal fluids resulted in the hydrothermal alteration of the clastic country rock. To better describe reservoir characteristics, reservoir samples were subjected to the following investigations: thin section examination, scanning electron microscope-energy dispersive spectrometer analysis (SEM–EDS), fluid inclusion homogenization temperature tests, vitrinite reflectance measurements, and X-ray diffraction. The results of this study provide evidence of the following hydrothermal alteration phenomena: brittle fracturing, clastic particle alteration, precipitation of unique hydrothermal minerals (celestite, zircon, apatite, barite, and cerous phosphate). The presence of abnormally high temperatures is indicated by fluid inclusion analysis, the precipitation of high-temperature authigenic minerals such as quartz, illite alteration, and anomalous vitrinite reflectance. Two aspects related to hydrothermal effects on reservoir properties have been investigated in this study: (1) Deep magmatic hydrothermal fluids carry large amounts of dissolved carbon dioxide and sulfur dioxide gas. These fluids percolate into the country rocks along fault zones, resulting in dissolution within the sandstone reservoirs and the development of significant secondary porosity. (2) Magma intrusions increase the temperature of the surrounding rocks and accelerate the thermal evolution of hydrocarbon source rocks. This results in the release of large amounts of organic acids and carbon dioxide, leading the dissolution of the aluminosilicate minerals and volcanic fragments in the reservoirs, and the generation of significant secondary porosity.

Organic Acids Exuded From Roots Increase the Available Potassium Content in the Rhizosphere Soil: A Rhizobag Experiment in Nicotiana tabacum

Organic acid secretion from higher plant roots into the rhizosphere soil plays an important role in nutrient acquisition and metal detoxification; however, their precise functions and the related mechanisms in abiotic stress tolerance remain poorly understood. Tobacco is an important crop plant, so thoroughly elucidating these factors in tobacco is of high priority. In the present study, the activation effect on soil potassium (K), contents of exuded organic acids, and physiological changes in the roots of various tobacco varieties under both normal K supply and K-deficiency stress were investigated. Our results showed that one high-K variety (ND202) exhibited a significantly higher total content of organic acids in the root exudates and the highest available K content in the rhizosphere soil, compared with two common ones (K326 and NC89). Moreover, the high-K tobacco variety was less affected in terms of root vigor under K-deficiency stress, and displayed greater increases in the activities of the stress-resistant enzymes consisting of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). Taken together, these results provide evidence that tobacco roots exude large amounts of organic acids to increase the available K content in the rhizosphere soil and improve the utilization rate of soil K.

Remediation of lead-contaminated water by geological fluorapatite and fungus Penicillium oxalicum.

Phosphate-solubilizing fungi (PSF) can secrete large amounts of organic acids. In this study, the application of the fungus Penicillium oxalicum and geological fluorapatite (FAp) to lead immobilization was investigated. The formation and morphology of the lead-related minerals were analyzed by ATR-IR, XRD, Raman, and SEM. The quantity of organic acids secreted by P. oxalicum reached the maximum on the fourth day, which elevated soluble P concentrations from 0.4 to 108mg/L in water. The secreted oxalic acid dominates the acidity in solution. P. oxalicum can survive in the solution with Pb concentration of ~ 1700mg/L. In addition, it was shown that ~ 98% lead cations were removed while the fungus was cultured with Pb (~ 1700mg/L) and FAp. The mechanism is that the released P from FAp (enhanced by organic acids) can react with Pb2+ to form the stable pyromorphite mineral [Pb5(PO4)3F]. The precipitation of lead oxalate also contributes to Pb immobilization. However, lead oxalate is more soluble due to its relatively high solubility. P. oxalicum has a higher rate of organic acid secretion compared with other typical PSF, e.g., Aspergillus niger. This study sheds light on bright future of applying P. oxalicum in Pb remediation.

On the biochemical conversion technology of edible fungi cultivation waste based on microbial fermentation process

Considering the biochemical conversion parameters of cultivation waste, the secondary development of product substrates and the standardized assessment after conversion of culture substrate waste, this paper takes the cultivation waste of edible fungi as the test materials and studies the microbial conversion of such waste, and then applies the converted culture substrates in the culture of cucumber seedlings. The results show that, when the cultivation waste substrate was treated through microbial fermentation, the temperature inside the substrate changed periodically. The rapeseed cake could promote the growth of the fermenting bacteria and effectively increase their metabolism; and the mixed pearlite in the waste had a positive effect in improving the porosity and water absorption of the culture substrate. The pH value decreased during the initial microbial transformation, because large amounts of organic acids were produced through the metabolism of aerobic bacteria, and then, when the temperature rose, the thermophilic microorganisms began to decompose organic acids, resulting in the continuous rise of the pH value. The higher content of substrate there was in the cultivation waste, the smaller the germination rate would be and the lower the healthy index would be, indicating that the waste substrate contained substances that inhibited seed germination. When the seedlings became adapted to the environment of the cultivation waste substrate, the nutrients in the substrate would facilitate the late-stage growth and development of seedlings.

Investigation on the safety of Lactobacillus amylolyticus L6 and its fermentation properties of tofu whey

The objective of this study was to screen a safe strain to prepare fermented tofu whey (FTW). Lactobacillus amylolyticus L6 was isolated from spontaneously acidified tofu whey and then identified by 16S rRNA and 23S rRNA gene sequencing. Its susceptibility to antibiotics, toxic metabolites were tested and it met the requirements established by European Food Safety Authority. L. amylolytics L6 was then applied to prepare FTW. After 48 h fermentation at 42 °C, L. amylolytics L6 produced large amount of organic acid with the titratable acidity of 110 oT by utilizing sucrose, raffinose and stachyose and the pH of FTW decreased to pH 3.1. L. amylolytics L6 also converted isoflavones glycoside into aglyconde partly and resulted in the significantly (p < 0.05) increase of antioxidant activities. L. amylolyticus L6 is safe and can be potentially used as a starter culture to produce tofu coagulant and functional beverage, which could add value to the soy processing byproduct.

Dissolution experiment and transformation condition analysis of Paleogene aragonite in the Jiyang Depression, China

ABSTRACTIn general, aragonite exists as a metastable carbonate mineral under near-surface conditions, and is commonly transformed into calcite under the subsurface and during diagenesis. It is thus seldom found in sedimentary rocks, but aragonite is common in the Paleogene lacustrine shales in the Jiyang Depression in eastern China. Dissolution experiments were conducted on the Paleogene aragonite-enriched and calcite-enriched shales at different temperatures, pressures and acetic acid concentrations, and in different types of solution. The results show that aragonite is insoluble in the in situ formation water but dissolved more readily under acetic acid conditions than calcite with the degree of dissolution increasing with increasing temperature, pressure and acetic acid concentrations. During the shallow burial diagenesis of the Paleogene sediment sequence in the Jiyang Depression, aragonite was relatively stable and was not dissolved by the connate pore water in the shales. Increasing burial (temperature) and maturity of the organic matter produced large amounts of organic acids that accelerated the dissolution of aragonite. In the late stage, as the organic matter became over-matured, the pore water changed from acidic to alkaline, and calcite precipitated from the carbonate-rich solution. Therefore, the conditions provided by organic acids enabled the conversion of aragonite to calcite during sedimentary diagenesis in the Paleogene lacustrine shales in the Jiyang Depression. This transformation corresponded to the thermal evolution of the organic matter within the shale sequence.

Identification and functional analysis of the L-ascorbate-specific enzyme II complex of the phosphotransferase system in Streptococcus mutans.

BackgroundStreptococcus mutans is the primary etiological agent of human dental caries. It can metabolize a wide variety of carbohydrates and produce large amounts of organic acids that cause enamel demineralization. Phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) plays an important role in carbohydrates uptake of S. mutans. The ptxA and ptxB genes in S. mutans encode putative enzyme IIA and enzyme IIB of the L-ascorbate-specific PTS. The aim of this study was to analyze the function of these proteins and understand the transcriptional regulatory mechanism.ResultsptxA−, ptxB−, as well as ptxA−, ptxB− double-deletion mutants all had more extended lag phase and lower growth yield than wild-type strain UA159 when grown in the medium using L-ascorbate as the sole carbon source. Acid production and acid killing assays showed that the absence of the ptxA and ptxB genes resulted in a reduction in the capacity for acidogenesis, and all three mutant strains did not survive an acid shock. According to biofilm and extracellular polysaccharides (EPS) formation analysis, all the mutant strains formed much less prolific biofilms with small amounts of EPS than wild-type UA159 when using L-ascorbate as the sole carbon source. Moreover, PCR analysis and quantitative real-time PCR revealed that sgaT, ptxA, ptxB, SMU.273, SMU.274 and SMU.275 appear to be parts of the same operon. The transcription levels of these genes were all elevated in the presence of L-ascorbate, and the expression of ptxA gene decreased significantly once ptxB gene was knockout.ConclusionsThe ptxA and ptxB genes are involved in the growth, aciduricity, acidogenesis, and formation of biofilms and EPS of S. mutans when L-ascorbate is the sole carbon source. In addition, the expression of ptxA is regulated by ptxB. ptxA, ptxB, and the upstream gene sgaT, the downstream genes SMU.273, SMU.274 and SMU.275 appear to be parts of the same operon, and L-ascorbate is a potential inducer of the operon.Electronic supplementary materialThe online version of this article (doi:10.1186/s12866-016-0668-9) contains supplementary material, which is available to authorized users.

L-lactic acid production by Aspergillus brasiliensis overexpressing the heterologous ldha gene from Rhizopus oryzae

BackgroundLactic acid is the building block of poly-lactic acid (PLA), a biopolymer that could be set to replace petroleum-based plastics. To make lactic acid production cost-effective, the production process should be carried out at low pH, in low-nutrient media, and with a low-cost carbon source. Yeasts have been engineered to produce high levels of lactic acid at low pH from glucose but not from carbohydrate polymers (e.g. cellulose, hemicellulose, starch). Aspergilli are versatile microbial cell factories able to naturally produce large amounts of organic acids at low pH and to metabolize cheap abundant carbon sources such as plant biomass. However, they have never been used for lactic acid production.ResultsTo investigate the feasibility of lactic acid production with Aspergillus, the NAD-dependent lactate dehydrogenase (LDH) responsible for lactic acid production by Rhizopus oryzae was produced in Aspergillus brasiliensis BRFM103. Among transformants, the best lactic acid producer, A. brasiliensis BRFM1877, integrated 6 ldhA gene copies, and intracellular LDH activity was 9.2 × 10−2 U/mg. At a final pH of 1.6, lactic acid titer reached 13.1 g/L (conversion yield: 26%, w/w) at 138 h in glucose-ammonium medium. This extreme pH drop was subsequently prevented by switching nitrogen source from ammonium sulfate to Na-nitrate, leading to a final pH of 3 and a lactic acid titer of 17.7 g/L (conversion yield: 47%, w/w) at 90 h of culture. Final titer was further improved to 32.2 g/L of lactic acid (conversion yield: 44%, w/w) by adding 20 g/L glucose to the culture medium at 96 h. This strain was ultimately able to produce lactic acid from xylose, arabinose, starch and xylan.ConclusionWe obtained the first Aspergillus strains able to produce large amounts of lactic acid by inserting recombinant ldhA genes from R. oryzae into a wild-type A. brasiliensis strain. pH regulation failed to significantly increase lactic acid production, but switching nitrogen source and changing culture feed enabled a 1.8-fold increase in conversion yields. The strain produced lactic acid from plant biomass. Our findings make A. brasiliensis a strong contender microorganism for low-pH acid production from various complex substrates, especially hemicellulose.

Draft Genome Sequence of Kozakia baliensis SR-745, the First Sequenced Kozakia Strain from the Family Acetobacteraceae.

Kozakia baliensis belongs to the family Acetobacteraceae and was described for the first time in 2002. These acetic acid bacteria are able to produce acetic acid from various carbon sources and 2- and 5-keto-d-gluconate from glucose. The novel K. baliensis strain SR-745 was isolated from a pineapple fruit bought in a German supermarket. The strain produces large amounts of organic acids when grown on glucose-containing medium and accepts also glycerol, fructose, mannitol, and sucrose as a C source. When grown under light and high-oxygen conditions in submerged culture, the production of a pink pigment is observed after 72 h.