Landrace Research Articles

Quality and Processability of Meat in Polish Native Pigs – A Review

Abstract The primary aim of pig breeding efforts is to produce animals characterized by outstanding performance, including also fattening and slaughter performance traits. However, improved carcass leanness and reduced carcass fatness, especially intramuscular fat content, have led to a deterioration of pork quality and processability. Due to the growing frequency of meat defects and the limited potential use of such meat in the production of premium products this constitutes a considerable problem for the meat industry. The breeds superior in terms of meat quality are native pig breeds, such as those kept in Poland, i.e. Pulawska (Pul), Zlotnicka Spotted (ZS) and Zlotnicka White (ZW) pigs. The aim of this paper is to present a review of research results concerning quality and processability of meat produced by the Polish native pig breeds. The presented results indicate that pigs of local breeds exhibit a low level of performance traits (daily gain, carcass leanness, backfat thickness) while maintaining very good parameters of meat quality and processability (muscle composition and physical properties, fatty acids profile, sensory traits). Thus, they are used as a source material for premium products. In view of the small size of local populations and higher production costs in Poland it is a niche production. Therefore, the current aim of breeding indigenous breeds is both to maintain a safe population size and genetic diversity and to increase popularity of their meat and processed meat products among consumers. This objective is attained, among other things, thanks to efforts to reduce cost of their production through optimization of environmental conditions and wider use of less expensive traditional feed formulations, which make it possible to fully utilize the potential of local pork resources.

A Preliminary Study on Perception of Non – Vegetarian Consumers about Backyard Poultry Farming

The present study was conducted in District Ludhiana of Punjab state to know about perception of non-vegetarian consumers about backyard poultry farming. The study was conducted by personally interviewing randomly selected Urban (Group A, n=50) and Rural (Group B, n=50) non vegetarian consumers. None of the respondent was above 60 years. Most of the non vegetarian consumers were having education level of graduation. Majority of the respondents were consuming non vegetarian food 1-2 times per week. Most of the Group A consumers were purchasing non vegetarian products from local market, while Group B consumers were purchasing it from farmers. Most of the Group A consumers has no knowledge about breeds of backyard poultry. A large chunk of consumers belonging to both Group A and Group B did not know about differences between exotic and indigenous breed. The present study highlighted the importance of strengthening of extension activities related with backyard poultry and strengthening of marketing linkages of backyard poultry farmers to the urban consumers. Fast-tracking the supply of a backyard poultry farmer’s produce to a city dweller’s doorstep ensures fresher, higher-quality food by reducing transit time, which helps to minimize spoilage and waste. It also expands market access for farmers, increases convenience for consumers, supports local economies, and can lower environmental impact by reducing transportation distances. Overall, it enhances food security and fosters a more efficient food system.

Influence of Management Systems on Severity of Heat Stress and Reproductive Performance of Rams in the Tropics – A Review

Abstract Sheep are an important source of protein for humans, and recent decades have seen a significant increase in the production of sheep-based products, thus indicating an increase in demand for this commodity. At a time when this sector is growing, sheep are exposed to various challenges. These include climate change, which can cause heat stress in sheep, including rams, which later negatively affects their growth and reproductive performance. Exposure to heat stress results in physiological and reproductive behaviour responses in rams, which could also be used to visually identify the effect of heat stress as it will affect the productivity of livestock. In addition, the year-round hot and humid climate of the tropics is expected to contribute to a higher probability of heat stress occurrences in rams reared in developing countries around the equator. Nevertheless, the adaptability of rams to heat stress varies according to their origin, whereby native breeds tend to adapt better. Despite that, native breeds still can be affected by adverse environmental conditions and rely on thermoregulation mechanisms to mitigate heat stress. This results in numerous negative physiological changes, such as sweating and increased heart rate. This review highlights the effects of heat stress on the physiology, reproductive behaviour and reproductive performance of male sheep. The review also discusses the impact of management systems on heat stress in rams, which affects sheep productivity.

Genetic diversity and polymorphism of genes associated with meat quality and growth traits of A Luoi Yellow cattle in Vietnam

Background and Aim: A Luoi Yellow cattle is an indigenous cattle breed that is raised in the A Luoi District, Vietnam, characterized by its small body size, high adaptability, and meat quality favored by domestic consumers. Marker-assisted selection is an effective approach for improving breeding genetics and sustainably developing livestock production. Therefore, this study aimed to investigate the genetic diversity and polymorphism of genes associated with meat quality and productivity in the A Luoi Yellow cattle population with the goal of future breeding selection and sustainable development of the A Luoi Yellow beef brand. Materials and Methods: In this study, we genotyped six functional genes, including Leptin (LEP), Calpastatin (CAST), Calpain 1, pleomorphic adenoma gene 1, Sirtuin 1, and Sirtuin 2 (SIRT2), involved in meat quality and growth traits using polymerase chain reaction (PCR) or PCR-restriction fragment length polymorphis. We also investigated mitochondrial DNA (mtDNA) and the Y chromosome-specific gene on the Y chromosome to elucidate the genetic diversity and paternal and maternal origin of the A Luoi Yellow cattle using Sanger sequencing. Results: The results showed that A Luoi yellow cattle have Bos indicus origin from both paternal and maternal lineages. By mtDNA analysis, we identified two new haplotypes of the I1 haplogroup that were not previously detected. The genotyping of the six functional genes indicated that A Luoi Yellow cattle carry favorable alleles that increase meat tenderness and body size, with frequencies of 0.02–0.40. In particular, the presence of desirable homozygous genotypes of the CAST, LEP, and SIRT2 genes will be important for the future selection of animals based on their potential performance in meat quality and productivity. Conclusion: The findings of this study is useful for the future breeding and sustainable development of A Luoi Yellow cattle. Keywords: A Luoi yellow cattle, growth trait, indels, meat tenderness, single nucleotide polymorphisms.

EquCab_Finn: A new reference genome assembly for the domestic horse, Finnhorse.

Finnhorse is Finland's native and national horse breed and it has genetic affinities to northern European and Asian horses. It has historical importance for agriculture, forest work and transport and as a war horse. Finnhorse has four breeding sections in the studbook and is under conservation and characterisation efforts. We sequenced and annotated the genome of a Finnhorse mare from the working horse section using PacBio and Omni-C data. This genome can complement the existing Thoroughbred reference genome (EquCab 3.0) and facilitate genetic studies of horses from northern Eurasia. We assembled 2.4 Gb of the genome with an N50 scaffold length of 83.8 Mb and the genome annotation resulted in a total of 19 748 protein coding genes of which 1200 were Finnhorse specific. The assembly has high quality and synteny with the current horse reference genome. We manually curated five genes of interest and deposited the final assembly in the European Nucleotide Archive under the accession no. PRJEB71364.

Agrobiodiversity Conservation Policies: Insights from an Integrated Micro-macro Economic Model in Ethiopia

AbstractNational strategies aiming to enhance agricultural productivity in sub-Saharan Africa have traditionally focused on encouraging the adoption of improved modern crop varieties. This approach led to genetic erosion and reduced option value for bioprospecting, an unintended consequence of the decline of locally conserved traditional varieties. Governments are often left with poor guidance to evaluate the costs and benefits of this strategy. In this paper, we propose a methodological framework for assessing agricultural policies based on local agrobiodiversity conservation. In particular, we modify a computable general equilibrium model with trade to account for the land allocated to traditional and improved modern varieties as input for the agricultural sector. As a case study we select the Ethiopian durum wheat. Several sources of data at macro, micro and agronomic levels are adopted to estimate parameters and economic effects. Accounting for climate change and technological projections up to 2050, results of a counterfactual scenario show that when policy-driven breeding programs in specific agroecological niches are implemented, they simultaneously achieves conservation and food production goals. The findings underscore the need for policy interventions aimed at promoting context-specific strategies that consider conservation and production objectives within the broader agricultural landscape.

Effect of Integrated nutrient management practices on nutrient uptake, yield and quality of improved black kavuni rice variety (CO57)

The rising demand for high-quality rice and rice products motivates farmers to produce traditional rice varieties. Rice production needs to be substantially increased with suitable nutrient management practices to meet the demand. Hence, the present study was carried out to evaluate the influence of integrated nutrient management practices on nutrient yield and quality of improved black kavuni rice. The research was conducted during the Early kar (April-August 2023) and Late samba (September - January 2023-24) seasons in a randomized block design (RBD) with three replications and twelve treatments consisting of N in equivalent basis with organic manure and inorganic fertilizers and one control. Based on an N equivalent basis, the required quantity of inorganic fertilizer, farmyard manure (FYM), vermicompost (VC) and poultry manure (PM) were applied to rice. Observations on nutrient uptake, yield and quality were recorded, and the data were analyzed using LSD at a 5% probability level for significance differences. The results revealed that higher nutrient uptake, yield and quality parameters of rice were recorded with 50% recommended dose of nitrogen through inorganic fertilizer + 50% recommended dose of nitrogen through VC + foliar spray of 0.5% ZnSO4 & 1% FeSO4 at tillering, panicle initiation (PI) and flowering stage (T11).

Adipose gene expression profiles in Northern Finncattle, Mirandesa cattle, Yakutian cattle and commercial Holstein cattle.

The drastic change in global climate has led to in-depth studies of the geneticresources of native cattle adapted to challenging environments. Native cattle breeds may harbor unique genetic mechanisms that have enabled them adapt to their given environmental conditions. Adipose tissues are key factors in the regulation of metabolism and energy balance and are crucial for the molecular switches needed to adapt to rapid environmental and nutritional changes. The transcriptome landscape of four adipose tissues was used in this study to investigate the differential gene expression profiles in three local breeds, Yakutian cattle (Sakha Republic), Northern Finncattle (Finland), Mirandesa cattle (Portugal) and commercial Holstein cattle. A total of 26 animals (12 cows, 14 bulls) yielded 81 samples of perirenal adipose tissue (n = 26), metacarpal adipose tissue (n = 26), tailhead adipose tissue (n = 26) and prescapular adipose tissue (n = 3). More than 17,000 genes were expressed in our dataset. Principal component analysis of the normalized expression profiles revealed a differential expression profile of the metacarpal adipose tissue. We found that the genes upregulated in the metacarpal adipose tissue of Yakutian cattle, such as NR4A3, TEKT3, and FGGY, were associated with energy metabolism and response to cold temperatures. In Mirandesa cattle, the upregulated genes in perirenal adipose tissue were related to immune response and inflammation (AVPR2, CCN1, and IL6), while in Northern Finncattle, the upregulated genes appeared to be involved in various physiological processes, including energy metabolism (IGFBP2). According to the sex-based comparisons, the most interesting result was the upregulation of the TPRG1 gene in three tissues of Yakutian cattle females, suggesting that adaptation is related to feed efficiency. The highest number of differentially expressed genes was found between Yakutian cattle and Holstein, several of which were associated with immunity in Yakutian cattle, indicating potential differences in disease resistance and immunity between the two breeds. This study highlights the vast difference in gene expression profiles in adipose tissues among breeds from different climatic environments, most likely highlighting selective pressure and the potential significance of the uniquely important regulatory functions of metacarpal adipose tissue.

Low-dose 60Co-γ-ray irradiation promotes the growth of cucumber seedlings by inducing CsSAUR37 expression.

Cucumber (Cucumis sativus L.) is a major vegetable crop grown globally, with a cultivation history of more than 3000years. The limited genetic diversity, low rate of intraspecific variation, and extended periods of traditional breeding have resulted in slow progress in their genetic research and the development of new varieties. Gamma (γ)-ray irradiation potentially accelerates the breeding progress; however, the biological and molecular effects of γ-ray irradiation on cucumbers are unknown. Exposing cucumber seeds to 0, 50, 100, 150, 200, and 250Gy doses of 60Co-γ-ray irradiation, this study aimed to investigate the resulting phenotype and physiological characteristics of seedling treatment to determine the optimal irradiation dose. The results showed that low irradiation doses (50-100Gy) enhanced root growth, hypocotyl elongation, and lateral root numbers, promoting seedling growth. However, high irradiation doses (150-250Gy) significantly inhibited seed germination and growth, decreasing the survival rate of seedlings. More than 100Gy irradiation significantly decreased the total chlorophyll content while increasing the malondialdehyde (MDA) and H2O2 content in cucumber. Transcriptome sequencing analysis at 0, 50, 100, 150, 200, and 250Gy doses showed that gene expression significantly differed between low and high irradiation doses. Gene Ontology enrichment and functional pathway enrichment analyses revealed that the auxin response pathway played a crucial role in seedling growth under low irradiation doses. Further, gene function analysis revealed that small auxin up-regulated gene CsSAUR37 was a key gene that was overexpressed in response to low irradiation doses, promoting primary root elongation and enhancing lateral root numbers by regulating the expression of protein phosphatase 2Cs (PP2Cs) and auxin synthesis genes.

Pomological and Molecular Characterization of Apple Cultivars in the German Fruit Genebank.

Traditional varieties are a valuable tool in modern apple breeding. However, the use of synonyms and missing source documentation hinder an effective identification and conservation of relevant cultivars. During several projects, the authenticity and diversity of the apple cultivar collection of the German Fruit Genebank (GFG) was evaluated extensively. The trueness-to-type of 7890 apple trees was assessed on a pomological and molecular level. Pomological evaluations were performed by at least two experienced experts to identify the original cultivar names. On the molecular level, a set of 17 SSR markers was used to determine a unique genetic profile for each apple cultivar. The pomological and molecular characterization was expressed in terms of a comprehensive trueness-to-type criterion and the results were previously published as a well-curated dataset. In this study, the published dataset was analyzed to evaluate the quality and diversity of the apple collection of the GFG and highlight new findings based on phylogenetic and parentage analysis. The dataset contains 1404 unique genetic profiles corresponding to unambiguous cultivar names. Of these 1404 cultivars, 74% were assessed as true-to-type. The collection of diploid apple cultivars showed a high degree of expected heterozygosity (Hexp = 0.84). Genetic diversity in terms of year and location of origin was investigated with a STRUCTURE analysis. It was hypothesized that genetic diversity might decline overtime due to restrictive breeding programs. The results showed a shift dynamic between older and newer cultivars in one specific cluster, but no significant decrease in genetic diversity was observed in this study. Lastly, a parentage analysis was performed to check parental relationships based on historical research. Out of 128 parent-child trios, 110 trios resulted in significant relationships and reconfirmed the information from the literature. In some cases, the information from the literature was disproven. This analysis also allowed for readjusting the trueness-to-type criteria for previously undetermined cultivars. Overall, the importance of authenticity evaluations for gene bank cultivars was highlighted. Furthermore, the direct use of the dataset was shown by relevant investigations on the genetic diversity and structure of the apple cultivar collections of the GFG.

Socioeconomic impact of livestock production in Gokuleshowor, Baitadi, Nepal

The study was carried out at the Baitadi district's Dilashaini rural municipality. The study area was primarily based on agriculture. Farmers in the studied area adopted a complex type of farming system that includes livestock, crops, fruits, forestry, and vegetable farming. This study was mainly conducted to identify key problems faced by farmers and the socioeconomic importance of livestock farming. Semi-structured questionnaires were used to randomly choose respondents for a key informant interview. 61 households were randomly selected without the replacement method. The results showed that most of the households were headed by men (52 households). The primary occupation was agriculture (72%), followed by business (22%). A benefit-to-cost ratio of 1.65 was discovered. Milk was priced at 48.08 rupees per liter. We found feeding management to be the main problem. Farmers invest a huge amount of their income in managing feed for livestock. Natural breeding was largely prevalent in the study area (96%); artificial insemination was still rare. In the studied area, the dairy sector was profitable, so it emphasized improved breeding programs, improved feeding management, and the establishment of well-managed dairy cooperatives, which helped in the development of the rural economy and the lifestyle of farmers.

Effects of Butylated Hydroxytoluene and Sorbitol as Diluent Components on Structural and Surface Ultrastructural Changes of Gaga Chicken Sperm During Cryopreservation

The Gaga chicken is an indigenous Indonesian breed that is important to preserve using semen cryopreservation technology. The study was conducted to determine the effect of adding sorbitol and butylated hydroxytoluene (BHT) in the diluent on the structural and surface ultrastructure of cryopreserved Gaga chicken sperm during cryopreservation /frozen storage. The study aimed to assess how adding sorbitol and butylated hydroxytoluene (BHT) to the diluent affects the structure and surface ultrastructure of cryopreserved Gaga chicken sperm. A completely randomized design was employed with four treatments and 10 replications including egg yolk-lactate ringer diluent (EYLR) as the control group, EYLR diluent with 3 mM BHT, EYLR diluent with 2% sorbitol, and EYLR diluent with both 3 mM BHT and 2% sorbitol. Semen was collected using a massage technique from 4 male chickens aged approximately 10 months, pooled semen was diluted, packaged in 0.25 mL straws, equilibrated for 2 hours at 5 °C, pre-freeze for 10 minutes, frozen for 24 hours, and thawed for 30 seconds at 37 °C. The parameters evaluated were sperm plasma membrane integrity, acrosome integrity, DNA damage, mitochondrial functionality, and surface ultrastructure. The results showed that the treatment had a significant effect on plasma membrane integrity and post-thawing mitochondrial functionality compared to the control, but no effect was observed on acrosome integrity or DNA damage. The results showed that the combination treatment of BHT with sorbitol had a significant effect on plasma membrane integrity and post-thawing mitochondrial function, but did not affect acrosome integrity or DNA damage when compared to the control group. Ultrastructural observations indicated that cryopreservation caused damage to the head, middle, and tail of the sperm in the control groups. However, these changes were prevented by the diluent containing a combination of BHT and sorbitol. The addition of both components (BHT 3 mM + sorbitol 2%) effectively maintained plasma membrane integrity, mitochondrial functionality, and surface ultrastructure of Gaga chicken sperm during cryopreservation. Keywords: Butylated hydroxytoluene, Chicken sperm, Cryopreservation, Sorbito, Structure, Sperm ultrastructure

Strategies, challenges, and outcomes of heat stress resilience in sub-Saharan African community-based cattle feedlots: a systematic review.

In sub-Saharan Africa, cattle feedlots face a significant challenge in dealing with heat stress. However, there is a lack of inclusive strategies for resilience in these situations. The aim of this systematic review is to investigate the strategies, challenges, and outcomes related to heat stress resilience in community-based cattle feedlots in sub-Saharan Africa. The PRISMA approach, which is a method for reporting systematic reviews and meta-analyses, was used to identify, screen, and analyze 30 peer-reviewed articles published over the last 20 years from Google Scholar and Scopus. The review found that key strategies to mitigate heat stress include providing shade through natural and artificial means, ensuring constant access to cool, clean water using water spraying systems and cooling ponds, and implementing nutritional adjustments such as high-energy feeds and electrolyte supplements. Additionally, genetic selection for heat-tolerant breeds and management practices like adjusting feeding times and improving ventilation were found to be effective in dealing with heat stress. In particular, local germplasm and genetic traits of cattle in sub-Saharan Africa play a crucial role in heat stress resilience. Indigenous breeds, which have adapted to the region's harsh climate over centuries, exhibit traits such as higher heat tolerance, better water-use efficiency, and improved feed conversion rates under heat stress conditions. This genetic resilience can be enhanced through targeted breeding programs aimed at amplifying these beneficial traits. Implementing these strategies resulted in improved cattle health and productivity, as evidenced by enhanced weight gain, better reproductive performance, and lower mortality rates. The socio-economic benefits of these strategies included reduced economic losses and increased farmer incomes, which in turn contributed to improved community health and nutrition. However, the review also identified significant challenges, including financial constraints, limited access to knowledge and training, and cultural resistance. To address these barriers, the review recommends increased investment in affordable cooling technologies, farmer education, and community-based initiatives. Additionally, leveraging the genetic strengths of local cattle breeds should be prioritized to maximize the effectiveness of heat stress resilience strategies.

Modern Plant Breeding Techniques in Crop Improvement and Genetic Diversity: From Molecular Markers and Gene Editing to Artificial Intelligence—A Critical Review

With the development of new technologies in recent years, researchers have made significant progress in crop breeding. Modern breeding differs from traditional breeding because of great changes in technical means and breeding concepts. Whereas traditional breeding initially focused on high yields, modern breeding focuses on breeding orientations based on different crops’ audiences or by-products. The process of modern breeding starts from the creation of material populations, which can be constructed by natural mutagenesis, chemical mutagenesis, physical mutagenesis transfer DNA (T-DNA), Tos17 (endogenous retrotransposon), etc. Then, gene function can be mined through QTL mapping, Bulked-segregant analysis (BSA), Genome-wide association studies (GWASs), RNA interference (RNAi), and gene editing. Then, at the transcriptional, post-transcriptional, and translational levels, the functions of genes are described in terms of post-translational aspects. This article mainly discusses the application of the above modern scientific and technological methods of breeding and the advantages and limitations of crop breeding and diversity. In particular, the development of gene editing technology has contributed to modern breeding research.

Genetic analysis of village pear (Pyrus communis L.) cultivar populations in northeastern Türkiye

Abstract Pear (Pyrus communis L.) stands out as a prominent fruit species in temperate regions worldwide. The Çoruh River basin, nestled in the lower Caucasus in Türkiye, serves as a valuable repository of pear germplasm. To elucidate the genetic structure of pear populations in this region, 84 village pear cultivar genotypes (land races) from six villages, sample garden collections (SCC), and wild Panta root stock populations were analysed using eleven microsatellite markers. Genetic diversity and structure analyses indicated that village pear cultivar populations exhibit substantial genetic diversity and admixture. This diversity is attributed to local farming practices such as phenotypic selection and widespread dispersal of clonal materials. The genetic structure analysis, combined with the identification of private alleles, indicates that the pear genetic resources in the Çoruh river basin likely has originated from two gene pool sources, specifically the Meydancık and Camili village pear traditional cultivar populations. The Camili village pear cultivar population as a new in situ genetic reserve site has been proposed. Despite the existence an ex situ conservation site, the study suggests inadequateness of SCC as an ex situ site in capturing the full extent of genetic diversity of village pear cultivar genetic resources. Thus, enriching the genetic diversity in the SCC ex situ site is essential for effective pear genetic resource conservation in the Çoruh river basin. These findings contribute valuable insights for the development of targeted conservation strategies, ensuring the preservation of pear genetic resources in this region.

Recent advances of CRISPR-based genome editing for enhancing staple crops.

An increasing population, climate change, and diminishing natural resources present severe threats to global food security, with traditional breeding and genetic engineering methods often falling short in addressing these rapidly evolving challenges. CRISPR/Cas systems have emerged as revolutionary tools for precise genetic modifications in crops, offering significant advancements in resilience, yield, and nutritional value, particularly in staple crops like rice and maize. This review highlights the transformative potential of CRISPR/Cas technology, emphasizing recent innovations such as prime and base editing, and the development of novel CRISPR-associated proteins, which have significantly improved the specificity, efficiency, and scope of genome editing in agriculture. These advancements enable targeted genetic modifications that enhance tolerance to abiotic stresses as well as biotic stresses. Additionally, CRISPR/Cas plays a crucial role in improving crop yield and quality by enhancing photosynthetic efficiency, nutrient uptake, and resistance to lodging, while also improving taste, texture, shelf life, and nutritional content through biofortification. Despite challenges such as off-target effects, the need for more efficient delivery methods, and ethical and regulatory concerns, the review underscores the importance of CRISPR/Cas in addressing global food security and sustainability challenges. It calls for continued research and integration of CRISPR with other emerging technologies like nanotechnology, synthetic biology, and machine learning to fully realize its potential in developing resilient, productive, and sustainable agricultural systems.

Genetic improvement and conservation of goats in tropic

Goats indeed have a significant historical and contemporary importance in human civilization, particularly in the realm of agriculture and food production. Their adaptability and widespread distribution have made them crucial for various societies across the world. Goats have played a central role in the Neolithic agricultural revolution, aiding in the spread of human civilization globally. Their adaptability allowed them to thrive in diverse environments, contributing to the sustenance and expansion of human settlements. Goats are highly adaptable and are found in a wide range of geographical regions. Their presence spans across continents, from tropical to temperate climates, showcasing their ability to thrive in various environmental conditions. There is diversity in the production performance of goats based on the region of the world and the specific breeds. Genetic improvement programs aim to enhance economically important traits such as milk production, growth rates and fiber production, thereby increasing productivity and income for goat farmers. Understanding the genetic parameters such as heritabilities and repeatabilities for various traits is crucial for designing effective breeding programs. These parameters provide insights into the genetic potential of goats for traits like milk production, growth and fiber quality. Heritability estimates for reproductive traits, body weight, daily gain and direct and maternal heritability are important for implementing selective breeding strategies aimed at improving overall productivity and efficiency in goat farming. Genetic improvement programs have been implemented in tropical environments to enhance milk production traits in goats. Genetic improvements have also targeted fiber production in goats, with a focus on traits such as grease fleece weight and average fiber diameter. These efforts aim to enhance the quality and quantity of fiber produced by goats for various commercial purposes. Despite the importance of conserving goat breeds with unique characteristics, planned conservation programs in tropical regions are often neglected. It’s emphasized that preserving indigenous goat breeds in their native habitats is essential for maintaining genetic diversity and ensuring future resilience in goat farming.

Advancements in Lentil Genomics for Enhanced Crop Breeding: A Review

Lentil (Lens culinaris Medik) is an essential pulse crop that is widely grown for its high nutritional value, notably its high protein content, making it an important dietary component for vegetarians and vegans. Despite being the world's fifth most produced pulse, with large contributions from Canada and India, lentil production confronts obstacles such as poor productivity due to limited genetic improvement against biotic and abiotic stresses under rainfed cultivation conditions. Recent advances in lentil genetics and genomics, such as the discovery of genes related to yield, disease resistance, and nutritional content, have boosted breeding efforts to generate improved lentil varieties. The use of contemporary genomic techniques like molecular markers, marker-assisted selection (MAS), genomic selection (GS), and next-generation sequencing (NGS) technology has sped up the discovery of quantitative trait loci (QTLs) and the production of novel cultivars with superior agronomic characteristics. Databases such as NCBI and ENA, as well as specialized resources like KnowPulse, provide critical genomic data, while the creation of lentil genome assemblies, notably the CDC Redberry variety, has improved our understanding of lentil genetics. These resources help to solve the constraints of traditional breeding, particularly for complex characteristics impacted by genotype-environment interactions, opening the way for more robust and productive lentil varieties. Although the application of advanced tools such as genetic engineering, cisgenesis, and genome editing has moved more slowly in lentils than in other crops, their potential to improve lentil output is encouraging. Recent studies on lentil genomes, together with the creation of increased genetic resources and cutting-edge techniques, offer the ability to overcome production constraints and dramatically increase lentil production and quality throughout the world.

Comparative study of first lactation performance of Norwegian Red crossbred cows with traditional breeds in New Zealand dairy systems

ABSTRACT Some New Zealand dairy farmers are using semen from Norwegian Red (NR) bulls to explore the performance of this breed under local grazing conditions. The objective of this study was to compare the first lactation performance of first cross NR cattle with traditional New Zealand breeds. Data were collected from six dairy farms in Southland, New Zealand, during 2022–2023 milk production seasons. Data were collected from 1178 first lactation cows including herd test of daily yields of milk, fat and protein and somatic cell counts, and persistency. Breeds included 386 NR cross (NRX), 231 Holstein Friesian (F), 84 Holstein Friesian cross (FX), 134 Holstein Friesian x Jersey (FJ) and 58 Jersey cross (JX) cows. Findings indicate F cows produced the greatest cumulative milk yield (3,744 kg), 138.6 kg more than NRX cows. There were no significant differences among the breed groups for milk yield and milk solids yield persistency and SCS (SCS = Log2 SCC). The total lactation milk yield of NRX cows was lower than that of the other breeds, excluding JX. These results pertain specifically to first lactation cows; therefore, it is necessary to undertake further analysis to evaluate the long-term productivity and longevity of NR breeds under New Zealand conditions.

Signatures of selection analyses reveal genomic differences among three heavy pig breeds that constitute the genetic backbone of a dry-cured ham production system

The Italian pig farming industry is unique in its focus on raising heavy pigs primarily for the production of high-quality dry-cured hams. These products require pigs to be slaughtered at a live weight of around 170 kg at 9 months of age. The primary breeds used in this system are Italian Duroc, Italian Landrace, and Italian Large White which are crossed to produce lines that meet standard requirements. Over the past four decades, selection and breeding programmes for these breeds have been subjected to distinct selective pressures to highlight the characteristics of each breed. In this study, we investigated the genome of these breeds by analysing high-density single nucleotide polymorphism data from over 9 000 pigs to scan for signatures of selection using four different methods, two within breeds and two across breeds. This allowed to identify the genomic regions that differentiate these breeds as well as any relevant genes and biological terms. On a global scale, we found that the Italian Duroc breed exhibited a higher genetic differentiation from the Italian Landrace and Italian Large White breeds, with a pairwise FST value of 0.20 compared with the 0.13 between Italian Landrace and Italian Large White. This may reflect either their different origins or the different breeding goals, which are more similar for the Italian Landrace and Italian Large White breeds. Despite these genetic differences at a global level, few signatures of selection regions reached complete fixation, possibly due to challenges in detecting selection linked to quantitative polygenic traits. The differences among the three breeds are confirmed by the low level of overlap in the regions detected. Genetic enrichment analyses of the three breeds revealed pathways and genes related to various productive traits associated with growth and fat deposition. This may indicate a common selection direction aimed at enhancing specific production traits, though different biological mechanisms are likely targeted by the same directional selection in these three breeds. Therefore, these genes may play a critical role in determining the distinctive characteristics of Italian Duroc, Italian Landrace, and Italian Large White, and potentially influence the traits in crossbred pigs derived from them. Overall, the insights gained from this study will contribute to understanding how directional selection has shaped the genome of these heavy pig breeds and to better address selection strategies aimed at enhancing the meat processing industry linked with dry-cured ham production chains.