The emergence of the chironomid pupae into the water column may potentially allow Daphnia to be released from positively size-selective fish predation and indirectly cause a Daphnia-driven clear-water phase in lakes. We studied these processes in Lake Towada, Japan, from April to October 1998. The biomass of the Daphnia longispina population was stable from April through June and increased by 3-fold in mid-July. This coincided well with the onset of the clear-water phase in the lake. The sharp decline of chironomid larvae in the sediment in June suggested that the major emergence occurred. Stomach contents of kokanee (Oncorhynchus nerka) and pond smelt (Hypomesus transpacificus nipponensis) also shifted from D. longispina to the chironomid pupae at that time. However, mean individual body size, mean ovigerous female size and clutch size of D. longispina declined rapidly in mid-June and stayed smaller thereafter compared to those in April–May, suggesting that fish predation was stronger after mid-June. It is probable that lower water temperatures in April–May suppressed fish feeding activity as well as reproduction in D. longispina, which resulted in the stable biomass of D. longispina. The increased water temperatures resulted in the stable biomass of D. longispina. This would lead to a mid-July peak of less predation-sensitive young adults. Therefore, the chironomid emergence seemed neither to release D. longispinafrom fish predation nor to be associated with the clear-water phase in the present study.