Lakes In Finland Research Articles

When good turns to bad and alien predators appear: The dynamics of biodiversity change in boreal waterbird communities

Temporal patterns of biodiversity are often difficult to interpret because of our limited understanding of how communities vary through time and how processes drive this variation. A further challenge with dynamic systems is choosing an appropriate baseline against which biodiversity change is judged. We used abundance time series of breeding waterbirds in eutrophic lakes in Finland for 1946–2022 to study the dynamics of biodiversity change in local communities and the relative role of two presumed main drivers, i.e. eutrophication and alien predators, in contributing to historical and recent trends in local abundances and biodiversity. We set the cut-off for the historical and recent study periods in the mid-1980 s, because the systematic monitoring of breeding waterbirds in Finland started in 1986 and recent analyses of biodiversity change and population trends in European boreal waterbird communities are mainly based on time series and data gathered since 1986. Both species richness and the total abundance of waterbirds in local communities showed contrasting trends between historical (gathered before the mid-1980 s) and current (gathered after the mid-1980 s) community time series, with the current time series indicating a decline and the historical time series indicating an increase. The abundances of habitat specialists (species preferring eutrophic lakes) and habitat generalists (species using both eutrophic and oligotrophic lakes) showed a corresponding difference between the current and historical time series. The local extinction rates were higher among habitat specialists than among habitat generalists. The trend indices for wetland-nesting species (highly vulnerable to predation by two alien species (the raccoon dog, Nyctereutes procyonoides, and American mink, Neovison vison) in terms of nest site) abundances were more negative than the trend indices of species nesting further away from waterbodies (less vulnerable to predation by two alien species). In addition, bottom-feeding species (presumably more sensitive to negative impacts of eutrophication) did not show more negative population trends than surface-feeding species (presumably less sensitive to negative impacts of eutrophication). Regardless of equal sensitivity to negative impacts of eutrophication, two species highly vulnerable to two alien predators showed more negative population trends than a less vulnerable species. The results suggest that increased predation has been an important driver of the population and biodiversity declines in the studied waterbird communities. The mid-1980 s may not provide an ecologically appropriate baseline against which changes in the populations and biodiversity of boreal waterbird communities are judged.

Sedimentary phosphorus burial in three contrasting boreal lakes in Finland

AbstractPermanent phosphorus (P) burial in sediment regulates lake trophic state over long timescales, but the controls on P burial are only partially understood. A diversity of biogeochemical settings may be found in lake sediments, which may have a strong impact on the processes controlling P burial from one location to another. Here, we investigate early diagenesis of P in three contrasting lakes in Southwest Finland. Eutrophic Lake Köyliönjärvi and mesotrophic Lake Pyhäjärvi have a history of nutrient loadings from agriculture, while Lake Vähäjärvi is an oligotrophic small forest lake, leading to potentially contrasting sediment biogeochemical dynamics. We combined porewater data and solid-phase sediment geochemical data to identify P phases in each system and investigate the dominant processes controlling P burial. Porewater profiles showed opposite gradients between the oligotrophic and the mesotrophic/eutrophic systems, implying net diffusive fluxes into and out of the sediments, respectively. Furthermore, sediment P data showed contrasting P speciation. Reactive P is buried in all systems, but the role of reducible iron (Fe) oxides in P retention is greater in mesotrophic/eutrophic lakes. In the oligotrophic system, aluminium (Al) oxides controlled P sorption into the sediment after diffusion from lake water. Evidence for vivianite formation was found only in the mesotrophic Lake Pyhäjärvi sediment, where 42–47% of total P was released in a Fe(II)-P specific extraction from the deeper part of the sediment column and vivianite crystals could be isolated from sediment samples.

Factors behind the threshold‐like changes in lake ecosystems along a water colour gradient: The effects of dissolved organic carbon and iron on euphotic depth, mixing depth and phytoplankton biomass

Abstract The effects of water colour, dissolved organic carbon (DOC), iron (Fe) and fetch on the mixing depth (Zmix), euphotic depth (Zeu) and phytoplankton biomass of lakes were studied to clarify the factors behind changes in lake productivity along a DOC gradient. The study was conducted by field sampling 102 lakes in Finland. The lakes were situated mainly in forested areas. At DOC concentrations below 15 mg/L, light attenuation was explained both by Fe and DOC, but at higher DOC concentrations the effect of Fe faded. For the absorption of different wavelengths of photosynthetic light, both DOC and Fe had a significant effect up to 475 nm, but for longer wavelengths only the effect of DOC was significant. Both Zmix and Zeu decreased logarithmically with increasing DOC and water colour. Water colour was determined by DOC and Fe. Zmix increased along with increasing fetch. Zmix exceeded Zeu when DOC concentration was >14.4 mg/L and water colour >106 mg Pt/L (platinum as chloroplatinate ion 3). Above the 14.4 mg/L DOC threshold, the illuminated part of the mixed layer decreased logarithmically with increasing water colour, leaving an increasing part of the mixed epilimnion below the photosynthetic layer. Chlorophyll‐a concentration showed a unimodal relationship with DOC, with the highest biomass occurring at DOC concentrations of 15.7–15.9 mg/L. The results suggested that above DOC concentration 14 mg/L and water colour 106 mg Pt/L, both quality and quantity of light in the epilimnion restrict production by phytoplankton. This can explain the observed threshold‐like changes in lake productivity along a DOC gradient.

Prey-mimetism in cercariae of Apatemon (Digenea, Strigeidae) in freshwater in northern latitudes.

Cercariae, the free-living larval stages of trematodes, have adopted an amazing variety of transmission strategies. One of them is prey-mimetism, i.e. cercariae mimicking prey to attract motile hosts to be eaten. In a period between 2002 and 2019, we examined small planorbid snails, Bathyomphalus contortus, Gyraulus parvus and Planorbis planorbis from lakes in Finland and Iceland and from the Curonian Lagoon in Lithuania. Cercariae with conspicuously enlarged tails and unusual swimming behaviour, likely mimicking invertebrate prey, were detected and studied by the use of morphological and molecular (cox1, ITS1-5.8S-ITS2 and 28S rDNA) methods. Cercariae of two species belonging to the genus Apatemon (Strigeidae) were recognised. We consider Apatemon sp. 5 ex P. planorbis from the Curonian Lagoon identical to Cercaria globocaudata U. Szidat, 1940. Cercariae ex G. parvus from Iceland and ex B. contortus from Finland were conspecific, and we named them Apatemon sp. 6; these cercariae could not be associated with any known species. For the first time, we verified that cercariae of the Bulbocauda group belong to the genus Apatemon. We provide a mini-review on records of furcocercariae of the family Strigeidae with enlarged tails reported in freshwaters of the northern hemisphere and reveal that it is not only Apatemon but also Australapatemon and most likely Strigea which belong to the Bulbocauda group, rendering it a purely ecological assemblage. Understanding which invertebrate swimming behaviour these cercariae are mimicking will enhance our knowledge of the processes behind trematode transmission and will help to assess evolutionary pathways of host-finding strategies in trematodes.

Characterization and genome analysis of a psychrophilic methanotroph representing a ubiquitous Methylobacter spp. cluster in boreal lake ecosystems

Lakes and ponds are considered as a major natural source of CH4 emissions, particularly during the ice-free period in boreal ecosystems. Aerobic methane-oxidizing bacteria (MOB), which utilize CH4 using oxygen as an electron acceptor, are one of the dominant microorganisms in the CH4-rich water columns. Metagenome-assembled genomes (MAGs) have revealed the genetic potential of MOB from boreal aquatic ecosystems for various microaerobic/anaerobic metabolic functions. However, experimental proof of these functions, i.e., organic acid production via fermentation, by lake MOB is lacking. In addition, psychrophilic (i.e., cold-loving) MOB and their CH4-oxidizing process have rarely been investigated. In this study, we isolated, provided a taxonomic description, and analyzed the genome of Methylobacter sp. S3L5C, a psychrophilic MOB, from a boreal lake in Finland. Based on phylogenomic comparisons to MAGs, Methylobacter sp. S3L5C represented a ubiquitous cluster of Methylobacter spp. in boreal aquatic ecosystems. At optimal temperatures (3–12 °C) and pH (6.8–8.3), the specific growth rates (µ) and CH4 utilization rate were in the range of 0.018–0.022 h−1 and 0.66–1.52 mmol l−1 d−1, respectively. In batch cultivation, the isolate could produce organic acids, and the concentrations were elevated after replenishing CH4 and air into the headspace. Up to 4.1 mM acetate, 0.02 mM malate, and 0.07 mM propionate were observed at the end of the test under optimal operational conditions. The results herein highlight the key role of Methylobacter spp. in regulating CH4 emissions and their potential to provide CH4-derived organic carbon compounds to surrounding heterotrophic microorganisms in cold ecosystems.

Heterogeneous preferences towards quality changes in water recreation: Latent class model for contingent behavior data

In this study, we evaluated the benefits of recreation in Lake Puruvesi in eastern Finland before the implementation of planned management actions. We used the approach of the combined travel cost and contingent behavior (TC–CB) method, which allows water quality levels not currently present to be taken into account. We extend the classic analysis with the latent class model for recreation demand and with a spatial interpretation of classes in order to understand the spatial pattern of the water recreation. Using the latent class model, we defined the visitor groups with different behavioral responses to quality changes and found visitor groups relevant for extending the welfare measures to the evaluation of management activities in other lakes in Finland. Summerhouse owners and tourists visiting less frequently and coming from longer distances shifted their number of recreation visits downwards due to even minor deterioration in water quality. As a result, the annual consumer surplus declined steadily alongside water quality. The recreational behavior for tourists was also spatially concentrated. Instead, for local visitors visiting several times per week only the worst level of water quality had an effect on the number of visits and the annual consumer surplus.

Consistency between high throughput sequencing and microscopy-based morphological characterization of phytoplankton communities

Thus far, the phytoplankton community composition analyses, used e.g. monitoring and assessment of the ecological status of water bodies, are based on time-consuming and expertise-demanding light microscopy analyses. Currently, DNA-based molecular tools are being developed to replace microscopy-based analyses. Although most of the DNA is expected to be found in living cells, long-lasting DNA in damaged cells or soluble extracellular or relic DNA can make up a large proportion of the total DNA in water samples. DNA-based phytoplankton analysis has been shown to be affected by the huge variation in the copy number of the rRNA gene between phytoplankton species (Mäki et al. 2017). On the contrary, RNA is present only in living organisms and reflects active protein synthesis. Therefore, RNA-based methods can provide a more reliable estimate of community composition. The large copy number variation of ribosomal genes and the absence of universal primers for simultaneous amplification of cyanobacterial and eukaryotic phytoplankton genes hinder the application of DNA-based molecular methods. We applied a directional random-primed high throughput sequencing (HTS) approach (Mäki and Tiirola 2018) to analyse 16S and 18S rRNA community structures of 83 boreal lakes in Finland, Northern Europe. With the method it was possible to simultaneously amplify all groups of aquatic microorganisms in addition to cyanobacteria and eukaryotic phytoplankton. A comparison between microscopy and HTS showed that the relative phylum (Fig. 0) and class level abundances of eukaryotic phytoplankton and order level abundances of cyanobacteria were consistent between the methods, despite that the HTS method overestimated the relative abundance of cyanobacteria. However, correspondence was low at genus and species level, mainly due to the lack of reference library sequences. HTS revealed more genera and was able to differentiate cryptic genera lacking morphological characteristics, but microscopy revealed a longer list of species (Vuorio et al. 2020). The RNA-based method applied showed potential, but it is not yet able to replace microscopy, mainly due to the lack of full length 16S and 18S sequences in the reference libraries. The main advantage of the method is that it is not limited to phytoplankton, but can be applied to simultaneous investigation of the total composition of microbes, including all bacteria, protists, ciliates, rotifers and zooplankton.

16S rRNA gene sequences of Candidatus Methylumidiphilus (Methylococcales), a putative methanotrophic genus in lakes and ponds

A putative novel methanotrophic genus, Candidatus Methylumidiphilus (Methylococcales), was recently shown to be ubiquitous and one of the most abundant methanotrophic genera in water columns of oxygen-stratified lakes and ponds in boreal and subarctic areas. However, it has probably escaped detection in many previous studies that used 16S rRNA gene amplicon sequencing due to insufficient database coverage, as previously analysed metagenome-assembled genomes (MAGs) affiliated with Ca. Methylumidiphilus do not contain 16S rRNA genes. Therefore, we screened MAGs affiliated with the genus for their 16S rRNA gene sequences in a recently published lake and pond MAG data set. Among 66 MAGs classified as Ca. Methylumidiphilus (with completeness over 40% and contamination less than 5%) originating from lakes in Finland, Sweden and Switzerland as well as from ponds in Canada, we found 5 MAGs, each containing one 1532 bp sequence spanning the V1-V9 regions of the 16S rRNA gene. After removal of sequence redundancy, this resulted in 2 unique 16S rRNA gene sequences. These sequences represented 2 different putative species: Ca. Methylumidiphilus alinenensis (GenBank accession OK236221) and another unnamed species of Ca. Methylumidiphilus (GenBank accession OK236220). We suggest that including these 2 sequences in reference databases will enhance 16S rRNA gene-based detection of members of this genus from environmental samples.

Water quality changes and organic matter removal using natural bank infiltration at a boreal lake in Finland

Managed aquifer recharge (MAR) refers to intentional infiltration of surface water to an aquifer for facilitating natural water treatment and storage. MAR is often used as a treatment to remove natural organic matter from water in drinking water production. The sustainability of MAR depends on how the aquifer capacity to remove organic matter will evolve over the long term. This report explores the behavior of MAR systems by using a natural lake–aquifer system as a surrogate. Natural infiltration of lake water to groundwater has been going on for millennia at the research site in Finland chosen for this study. According to the measurements, the mean concentration of total organic carbon (TOC) in lake water was 3.0 mg/L. Within the distance of 3 m from the lake bank (retention time 7–15 days), already 46% of TOC was removed. At greater distances along the flow paths within the aquifer, 80–90% of TOC was removed. The observed TOC removal in the aquifer was slightly higher than the reported values at MAR sites, indicating that MAR can be an effective solution to the problem of removing natural organic matter in the long term. Signs of accumulation of organic matter were not observed in the aquifer, which suggests that biodegradation was the main removal method, and the role of sorption was minor. Several processes had an impact on oxygen levels in the aquifer, which led to spatial and seasonal changes in the redox conditions and in the iron and manganese concentrations in groundwater.

Redds of brown trout in the deep channels of a hydroelectric power station

AbstractNatural spawning redds of brown trout were surveyed for the first time in 1−6‐m deep urban channels of a hydroelectric power station (HEP) between two lakes in Finland, by scuba diving and wading. Before damming a century ago, thousands of lake migrating trout spawners ascended through the rapids to upstream spawning areas. Between 2015 and 2018, 11 trout redds were observed at depths of 250−340 cm; these may be the deepest reported in running waters. Nine redds were found at depths of 75−230 cm. The nearest redds were situated only 55 m upstream and 110 m downstream from the HEP inflow and outflow, respectively. Channel substrate and trout redds were dominated by particle size classes 32−64, 64−128, and 16−32 mm. The risk of diving in the area increased due to the high amount of litter on the riverbed. Observations of wild trout parr by local anglers provide evidence that natural spawning produces some fish in the HEP channels.

Biases in radiocarbon dating of organic fractions in sediments from meromictic and seasonally hypoxic lakes

We present here radiocarbon dating results from two boreal lakes in Finland, which are permanently (meromictic) or seasonally stratified and contain continuous sequences of annually laminated sedim ...

P.834 The effects of nicotinamide on the brain functional protein markers in prevention of diabetic neuropathy

There are several methods for studying metal-contaminated freshwater sediments, but more information is needed on which methods to include in ecological risk assessment. In this study, we compliment the traditional Sediment Quality Triad (SQT) approach – including information on chemistry, toxicity and ecological status – with studies on metal bioavailability and metal body residues in local organisms.We studied four mining-affected boreal lakes in Finland by conducting chemical analyses of sediment and water, toxicity tests (L. variegatus, V. fischeri, C. riparius, L. stagnalis), and analysis of benthic organism community structure. In addition, we studied the relationships between metal loading, toxicity, metal bioavailability, and metal body residues in the field-collected biota.Chemistry and benthic organism community structures show adverse effects in those lakes, where the metal concentrations are the highest. However, toxicity was connected to low sediment pH during the experiment, rather than to high metal concentrations. Toxicity was observed in 4 out of 6 toxicity tests including growth test with L. variegatus, bulk sediment test with V. fischeri, and the L. stagnalis toxicity test. The C. riparius test did not show toxicity. Metal body residues in biota were not high enough to induce adverse effects (0.1–4.1 mg Cu/kg fw, 0.01–0.3 mg Ni/kg fw, 2.9–26.7 mg Zn/kg fw and 0.01–0.7 mg As/kg fw).Chemical analyses, metal bioavailability assessment and benthic community structures survey revealed adverse effects in the sediments, where metal concentrations are highest (Lake SJ and Lake KS). Standard toxicity tests were not suitable for studying acid, sulfide-rich sediments and, therefore, benthic structure study and chemical analyses are believed to give more reliable results of the ecological status of these sediments.

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315

The Baltic Sea is a shallow basin of brackish water in which the spatial salinity gradient is one of the most important factors contributing to species distribution. The Baltic Sea is infamous for its annual cyanobacterial blooms comprised of Nodularia spumigena, Aphanizomenon spp., and Dolichospermum spp. that cause harm, especially for recreational users. To broaden our knowledge of the cyanobacterial adaptation strategies for brackish water environments, we sequenced the entire genome of Dolichospermum sp. UHCC 0315, a species occurring not only in freshwater environments but also in brackish water. Comparative genomics analyses revealed a close association with Dolichospermum sp. UHCC 0090 isolated from a lake in Finland. The genome closure of Dolichospermum sp. UHCC 0315 unraveled a mixture of two subtypes in the original culture, and subtypes exhibited distinct buoyancy phenotypes. Salinity less than 3 g L−1 NaCl enabled proper growth of Dolichospermum sp. UHCC 0315, whereas growth was arrested at moderate salinity (6 g L−1 NaCl). The concentrations of toxins, microcystins, increased at moderate salinity, whereas RNA sequencing data implied that Dolichospermum remodeled its primary metabolism in unfavorable high salinity. Based on our results, the predicted salinity decrease in the Baltic Sea may favor toxic blooms of Dolichospermum spp.

Ecotoxicity assessment of boreal lake sediments affected by metal mining: Sediment quality triad approach complemented with metal bioavailability and body residue studies

There are several methods for studying metal-contaminated freshwater sediments, but more information is needed on which methods to include in ecological risk assessment. In this study, we compliment the traditional Sediment Quality Triad (SQT) approach – including information on chemistry, toxicity and ecological status – with studies on metal bioavailability and metal body residues in local organisms.We studied four mining-affected boreal lakes in Finland by conducting chemical analyses of sediment and water, toxicity tests (L. variegatus, V. fischeri, C. riparius, L. stagnalis), and analysis of benthic organism community structure. In addition, we studied the relationships between metal loading, toxicity, metal bioavailability, and metal body residues in the field-collected biota.Chemistry and benthic organism community structures show adverse effects in those lakes, where the metal concentrations are the highest. However, toxicity was connected to low sediment pH during the experiment, rather than to high metal concentrations. Toxicity was observed in 4 out of 6 toxicity tests including growth test with L. variegatus, bulk sediment test with V. fischeri, and the L. stagnalis toxicity test. The C. riparius test did not show toxicity. Metal body residues in biota were not high enough to induce adverse effects (0.1–4.1 mg Cu/kg fw, 0.01–0.3 mg Ni/kg fw, 2.9–26.7 mg Zn/kg fw and 0.01–0.7 mg As/kg fw).Chemical analyses, metal bioavailability assessment and benthic community structures survey revealed adverse effects in the sediments, where metal concentrations are highest (Lake SJ and Lake KS). Standard toxicity tests were not suitable for studying acid, sulfide-rich sediments and, therefore, benthic structure study and chemical analyses are believed to give more reliable results of the ecological status of these sediments.

Interactions between environmental factors and vertical extension of helophyte zones in lakes in Finland

Sheltered shores in boreal lakes are typically dominated by emergent helophytes in which the perennating organ lies in soil below the water level, but the aerial shoots protrude above the water. Changes in natural water-level regimes due to hydropower development may significantly affect the longitudinal extent of the helophyte zone. We explored the vertical distribution of helophyte zones under water-level regulation to develop tools for estimating hydropower impacts. We recorded the vertical extension of the three most common helophyte species (Carex L. spp., Equisetum fluviatile L., and Phragmites australis (Cav.) Trin. ex Steud.) along 238 macrophyte transects in four regulated lakes and one nonregulated lake in Finland. We used random forest (RF) models to quantify the degree to which water-level fluctuation and site-specific environmental variables uniquely explained the variation in helophyte zonation. The vertical extension of Carex spp. was most strongly associated with the water-level fluctuation of the open-water period (OWP), followed by Phragmites and Equisetum. Overall, the RF models explained 4–41% of the variation observed in the helophyte zones. The models indicated that OWP fluctuation, slope, openness, and cover of other macrophyte groups were key factors explaining the extent of the helophyte zones. OWP fluctuation was the most important variable for zonation of Carex spp. and the upper limit of Phragmites. Slope was the most significant variable for the lower limit of Equisetum and Phragmites. Our study demonstrates the importance of taking into account natural habitat-level variability to increase confidence in quantifying the environmental impacts of hydropower production. This approach could be used in future impact assessments of new water-level regulation practices.

An alloherpesvirus infection of European perch Perca fluviatilis in Finland.

The order Herpesvirales includes viruses that infect aquatic and terrestrial vertebrates and several aquatic invertebrates (i.e. mollusks), and share the commonality of possessing a double-stranded DNA core surrounded by an icosahedral capsid. Herpesviruses of the family Alloherpesviridae that infect fish and amphibians, including channel catfish virus and koi herpesvirus, negatively impact aquaculture. Here, we describe a novel herpesvirus infection of wild European perch from lakes in Finland. Infected fish exhibited white nodules on the skin and fins, typically in the spring when prevalence reached nearly 40% in one of the sampled lakes. Transmission electron microscopic examination of affected tissues revealed abundant nuclear and cytoplasmic virus particles displaying herpesvirus morphology. Degenerate PCR targeting a conserved region of the DNA polymerase gene of large DNA viruses amplified a 520 bp product in 5 of 5 affected perch skin samples tested. Phylogenetic analysis of concatenated partial DNA polymerase and terminase (exon 2) gene sequences produced a well-supported tree grouping the European perch herpesvirus with alloherpesviruses infecting acipenserid, esocid, ictalurid, and salmonid fishes. The phenetic analysis of the European perch herpesvirus partial DNA polymerase and terminase nucleotide gene sequences ranged from 34.6 to 63.9% and 39.6 to 59.6% to other alloherpesviruses, respectively. These data support the European perch herpesvirus as a new alloherpesvirus, and we propose the formal species designation of Percid herpesvirus 2 (PeHV2) to be considered for approval by the International Committee on Taxonomy of Viruses.

Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 81:257-276 (2018) - DOI: https://doi.org/10.3354/ame01874 Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters Antti J. Rissanen1,2,*, Jatta Saarenheimo2, Marja Tiirola2, Sari Peura3, Sanni L. Aalto2, Anu Karvinen4, Hannu Nykänen2,5 1Tampere University of Technology, Laboratory of Chemistry and Bioengineering, PO Box 527, 33101 Tampere, Finland 2University of Jyväskylä, Department of Biological and Environmental Science, PO Box 35, 40014 Jyväskylä, Finland 3Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Science for Life Laboratory, PO Box 7026, 75007 Uppsala, Sweden 4University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland 5University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 1627, 70211 Kuopio, Finland *Corresponding author: antti.rissanen@tut.fi ABSTRACT: Small oxygen-stratified humic lakes of the boreal zone are important sources of methane to the atmosphere. Although stable isotope profiling has indicated that a substantial part of methane is already oxidized in the anaerobic water layers in these lakes, the contributions of aerobic and anaerobic methanotrophs in the process are unknown. We used next-generation sequencing of mcrA and 16S rRNA genes to characterize the microbial communities in the water columns of 2 boreal lakes in Finland, Lake Alinen-Mustajärvi and Lake Mekkojärvi, and complemented this with a shotgun metagenomic analysis from Alinen-Mustajärvi and an analysis of pmoA genes and 16S rRNA, mcrA, and pmoA transcripts from Mekkojärvi. Furthermore, we tested the effect of various electron acceptors and light on methane oxidation (13C-CH4 labeling) in incubations of water samples collected from the lakes. Aerobic gammaproteobacterial methanotrophs (order Methylococcales) exclusively dominated the methanotrophic community both above and below the oxycline in the lakes. A novel lineage within Methylococcales, Candidatus Methyloumidiphilus alinensis, defined here for the first time, dominated in Alinen-Mustajärvi, while methanotrophs belonging to Methylobacter were more abundant in Mekkojärvi. Light enhanced methane oxidation in the anoxic water layer, while alternative electron acceptors (SO42-, Fe3+, Mn4+, and anthraquinone-2,6-disulfonate), except for NO3-, suppressed the process. Our results suggest that oxygenic photosynthesis potentially fuels methanotrophy below the aerobic water layers in methane-rich boreal lakes. Furthermore, incubation results, together with the detection of denitrification genes from metagenome-assembled genomes of gammaproteobacterial methanotrophs, imply that boreal lake methanotrophs may couple methane oxidation with NOx- reduction in hypoxic conditions. KEY WORDS: Methanotroph · Methane oxidation · Boreal lake · Water column · Shotgun metagenomics · 16S rRNA · mcrA Full text in pdf format Supplementary material PreviousNextCite this article as: Rissanen AJ, Saarenheimo J, Tiirola M, Peura S, Aalto SL, Karvinen A, Nykänen H (2018) Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters. Aquat Microb Ecol 81:257-276. https://doi.org/10.3354/ame01874 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 81, No. 3. Online publication date: May 30, 2018 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2018 Inter-Research.

Shifts in the structure and function of the microbial community in response to metal pollution of fresh water sediments in Finland

Mining is a common source of metals in aquatic ecosystems. Metal loading in the environment is thought to be a selective pressure that induces compositional and functional changes within the affected microbial community in the sediment. This study aims to explore shifts in the diversity, structure, and functional gene abundance of microbial communities in the sediment of the copper mining-induced contaminated lakes in Finland. The sediment microbial community structures and abundance of the functional groups involved in carbon/nitrogen/sulfur cycling in four lakes located downstream from metal mines (Kirkkoselka (KS), Junttiselka (JS), Laakajarvi (LJ), and Sysmajarvi (SJ)) and one reference lake (Parkkimanjarvi (PJ)) in Finland were compared using high throughput sequencing and quantitative PCR. Compared to the PJ reference lake sediment, the relative abundances were higher for Bacteroidetes, Gemmatimonadetes, Acidobacteria, and Nitrospirae but lower for Firmicutes and Alphaproteobacteria in the mine-contaminated sediment samples. The number of copies of copper-resistant genes (copA) in the two copper-contaminated sediments (5.34 × 106 and 4.95 × 106 copies ng−1 DNA for KS and JS, respectively) was significantly higher than that in the PJ sediment (1.33 × 106 copies ng−1 DNA). Methanogens (mcrA gene) accounted for 5.09–11.5% of the total archaea (16S rRNA) in these lake sediments. In addition, ammonia-oxidizing archaea (amoA gene) in the LJ sediment accounted for 36.0% of the total archaea but only 0.83–1.63% in the sediment of other lakes. The abundance of eight investigated functional groups accounted for 28.8% of the total bacteria in the PJ sediment but less than 1.3% in the metal-contaminated sediments. The canonical correspondence analysis showed that the microbial community structure of Lake LJ was scattered far from the other lakes and was significantly correlated with nitrate; the community structural change in the JS and KS sediments was positively correlated with copper or negatively correlated with nitrate concentration. These results indicate that the sedimentary indigenous microbial community may shift its composition and structure as well as its function to increase its adaptability and/or resistance to metal-contaminated freshwater sediments.

Epiphytic bacteria make an important contribution to heterotrophic bacterial production in a humic boreal lake

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 79:247-257 (2017) - DOI: https://doi.org/10.3354/ame01835 Epiphytic bacteria make an important contribution to heterotrophic bacterial production in a humic boreal lake Jussi Vesterinen1,*, Shawn P. Devlin1,2, Jari Syväranta1,3, Roger I. Jones1 1University of Jyväskylä, Department of Biological and Environmental Science, PO Box 35, 40014 University of Jyväskylä, Finland 2Flathead Lake Biological Station, University of Montana, Polson, MT 59860, USA 3University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland *Corresponding author: jussi.p.vesterinen@jyu.fi ABSTRACT: Bacterial production (BP) in lakes has generally only been measured in the pelagic zone without accounting for littoral BP, and studies of BP at the whole-lake scale are very scarce. In the dystrophic humic lakes, which are common throughout the boreal region, low light penetration through water has been assumed to seriously limit available habitats for littoral organisms. However, many highly humic boreal lakes have extensive partly submerged vegetation around the lake perimeter which can provide well-lit substrata for highly productive epiphyton. We measured epiphytic BP on the littoral vegetation and pelagic BP in a small highly humic boreal lake in Finland during an open-water season and extrapolated the BP rates to the whole lake. Pelagic BP dominated the combined BP over the study period, but the epiphytic BP contributed an average of 24% to overall BP over the sampling period and was almost equal to pelagic BP in July. According to these results, a substantial component of BP has been previously overlooked in the lake when BP has been measured only from the pelagic. Our study demonstrates that the role of the littoral zone in BP in highly humic lakes has previously been understated, and needs to be taken into account in assessments of whole-lake carbon cycling and metabolism. KEY WORDS: Littoral · Periphyton · Pelagic · Autotrophic · Heterotrophic Full text in pdf format PreviousNextCite this article as: Vesterinen J, Devlin SP, Syväranta J, Jones RI (2017) Epiphytic bacteria make an important contribution to heterotrophic bacterial production in a humic boreal lake. Aquat Microb Ecol 79:247-257. https://doi.org/10.3354/ame01835 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 79, No. 3. Online publication date: July 05, 2017 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2017 Inter-Research.

Thermal structure of the lakes of the North-West of Russia during the freeze-up period

On the basis of analyzing long-term field data, we investigated the vertical thermal structure of 66 lakes of the North-West of Russia during the freeze-up period. The largest variability in thermal structure is characteristic for low-drainage shallow water bodies. Detailed data were obtained at self-contained buoy stations located in a small Lake Vendyurskoe (southern Karelia) were used to identify water temperature changes at the depths for a winter season as well as making assessments of het flows at the water–bottom and water–ice interfaces. The interannual water temperature variability at the depths reaches 2°C. The main geographical factors influencing the formation of thermal stratifications in the 66 lakes used in the study during the winter period are their mean depth, area, water residence time and geographical latitude. The largest vertical water temperature gradients are characteristic for the group of the smallest and shallow lakes, in the bottom layers of which the water temperature exceeds the temperature of maximum density, whereas in the deep lakes (more than 15 m) the water temperature is below 4°C. The lowest values of water temperature are observed in large lakes. The water temperature in the upper layer (up to 10 m) of drainage water bodies also decreases to 0–1°C as the result of the removal of heat with the river discharge. According to the thermal stratifications, the lakes are categorized as small (shallow, deep and drainage lakes), medium-sized and large shallow and large deep lakes. The suggested regression model permits a typical water temperature to be assessed at standard depths at the end of a winter season for any water body in the study region using available geographical information. The verification of the model is done from independent data for eight lakes of Finland.