Lake Chala Research Articles

Disentangling influences of climate variability and lake-system evolution on climate proxies derived from isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs): the 250 kyr Lake Chala record

Abstract. High-resolution paleoclimate records from tropical continental settings are greatly needed to advance understanding of global climate dynamics. The International Continental Scientific Drilling Program (ICDP) project DeepCHALLA recovered a 214.8 m long sediment sequence from Lake Chala, a deep and permanently stratified (meromictic) crater lake in eastern equatorial Africa, covering the past ca. 250 000 years (250 kyr) of continuous lacustrine deposition since the earliest phase of lake-basin development. Lipid biomarker analyses on the sediments of Lake Chala can provide quantitative records of past variation in temperature and moisture balance from this poorly documented region. However, the degree to which climate proxies derived from aquatically produced biomarkers are affected by aspects of lake developmental history is rarely considered, even though it may critically influence their ability to consistently register a particular climate variable through time. Modern-system studies of Lake Chala revealed crucial information about the mechanisms underpinning relationships between proxies based on isoprenoid (iso-) and branched (br-) glycerol dialkyl glycerol tetraethers (GDGTs) and the targeted climate variables, but the persistence of these relationships in the past remains unclear. Here we assess the reliability of long-term climate signals registered in the sediments of Lake Chala by comparing downcore variations in GDGT distributions with major phases in lake-system evolution as reflected by independent proxies of lake depth, mixing regime and nutrient dynamics: seismic reflection data, lithology and fossil diatom assemblages. Together, these records suggest that during early lake history (before ca. 180–200 ka) the distinct mixing-related depth zones with which specific GDGT producers are associated in the modern-day lake were not yet formed, likely due to more open lake hydrology and absence of chemical water-column stratification. Consequently absolute GDGT concentrations dating to this period are relatively low, proxies sensitive to water-column stratification (e.g., branched versus isoprenoid tetraether (BIT) index) display highly irregular temporal variability, and correlations between proxies are dissimilar to expectations based on modern-system understanding. A sequence of lake-system changes between ca. 180–200 and ca. 80 ka first established and then strengthened the chemical density gradient, promoting meromictic conditions despite the overall decrease in lake depth due to the basin gradually being filled up with sediments. From ca. 180 ka onward some GDGTs and derived proxies (e.g., crenarchaeol concentration, BIT index and IR6Me) display strong ∼ 23 kyr periodicity, likely reflecting the predominantly precession-driven insolation forcing of Quaternary climate variability in low-latitude regions. Our results suggest that GDGT-based temperature and moisture-balance proxies in Lake Chala sediments reflect the climate history of eastern equatorial Africa from at least ca. 160 ka onwards, i.e., covering the complete last glacial–interglacial cycle and the penultimate glacial maximum. This work confirms the potential of lacustrine GDGTs for elucidating the climate history of tropical regions at Quaternary timescales, provided they are applied to suitably high-quality sediment archives. Additionally, their interpretation should incorporate a broader understanding of the extent to which lake-system evolution limits the extrapolation back in time of proxy-climate relationships established in the modern system.

Assessment of branched glycerol monoalkyl glycerol tetraether (brGMGT)-based paleothermometry in the 250,000-year sediment record of Lake Chala, equatorial East Africa

Branched glycerol monoalkyl glycerol tetraethers (brGMGTs), a relatively understudied group of bacterial membrane lipids structurally similar to branched glycerol dialkyl glycerol tetraethers (brGDGTs), appear to be strongly influenced by temperature in terrestrial settings. In surficial bottom sediments of East African lakes, the abundance of brGMGTs relative to the sum of brGMGTs and brGDGTs (%brGMGT) and brGMGT distribution are strongly related to local mean annual air temperature (MAAT), stimulating development of new paleothermometers. However, applications of these methods to lake-sediment records are currently lacking. Here we investigate brGMGT concentrations and distributions in 916 samples throughout the 250,000-year (250-kyr) sediment sequence from Lake Chala, a presently fresh and permanently stratified (meromictic) tropical crater lake. All seven previously identified brGMGTs occur abundantly, reflected in a relatively high average %brGMGT of 19%. BrGMGTs and brGDGTs concentrations throughout the sequence are strongly correlated (R = 0.83, p < 0.001), suggesting that their producers and/or associated ecological niches substantially overlap. Clear distinction can be made between brGMGTs produced predominantly in the bottom sediments (H1034a and H1034c) versus the anoxic lower water column (H1020a-c and H1034b). Although a 17-month monitoring study of Lake Chala suggested brGMGTs are primarily produced in the sediments, down-core data assign greater importance to aquatic production than previously estimated. Instead of reflecting temperature, %brGMGT variations showed greatest similarity to GDGT proxies reflecting lake depth and/or mixing regime. BrGMGT-based temperature models produce ambiguous reconstructions, showing little similarity to known global temperature trends or the brGDGT-based mean summer temperature (MST) reconstruction from the same sediments.

A Lake Record of Geomagnetic Secular Variations for the Last 23 ka From Lake Chala: Toward a Composite Directional Lake Record of the Earth's Magnetic Field for Equatorial East Africa

AbstractThe documentation and understanding of variations in the Earth's magnetic field through time is fundamental for several disciplines, but current geomagnetic models rely on datasets heavily biased toward the mid‐ and high northern latitudes. The African continent and surrounding islands and oceans are particularly underrepresented. Here, we present a new record of paleo‐secular variation (PSV) of the inclinations over the last 23 ka from Lake Chala, situated at 3°S near Mt Kilimanjaro in eastern equatorial Africa. This groundwater‐fed crater lake is characterized by a high sedimentation rate (ca. 1 cm/10 years) and a particularly well‐constrained age model based on 210Pb and 14C dating. The magnetic mineralogy of the sediments is tested with rock magnetic analyses. The Lake Chala inclination record shows four highs and lows over 20 ka and compares well with that of Lake Malawi (10°S) between 20 and 16.2 ka, and from 9.8 to 2.6 ka. This record is linked to PSV records at Lakes Victoria and Malawi using a sequence slotting technique to generate a composite PSV model for east Africa. Analyzed at best‐possible resolutions up to 200 years, the Lake Chala PSV record not only represents an important contribution to improve our understanding of local and global features of the Earth's magnetic field. It also expands the utility of paleomagnetism as a key tool for dating and correlation both for archeological sites throughout East Africa and the many volcanoes, active or dormant, of the East African Rift System.

The >250-kyr Lake Chala record: A tephrostratotype correlating archaeological, palaeoenvironmental and volcanic sequences across eastern Africa

Regional tephrostratigraphic frameworks connect palaeoclimate, archaeological and volcanological records preserved in soils or lake sediments via shared volcanic ash (tephra) layers. In eastern Africa, tracing of tephra isochrons between geoarchaeological sequences is an established chronostratigraphic approach. However, to date, few long tephra records exist from sites with continuous depositional sequences, such as lake sediments, which offer the potential to connect local and discontinuous sequences at the regional scale. Long lake sediment sequences may also capture more complete eruptive histories of understudied volcanic centres. Here, we present and date the tephrostratigraphic record of a >250,000-year (>250-kyr) continuous sediment sequence extracted from Lake Chala, a crater lake on the Kenya-Tanzania border near Mt Kilimanjaro. Single-grain glass major and minor element analyses of visible and six cryptotephra layers reveal compositions ranging from mafic foidites and basanites to more evolved tephri-phonolites, phonolites, trachytes and a single rhyolite. Of these, nine are correlated to scoria cone eruptions of neighbouring Mt Kilimanjaro or the Chyulu volcanic field ∼60 km to the north; seven are correlated to phonolitic eruptions of Mt Meru, ∼100 km to the west; and four to voluminous trachytic eruptions of Central Kenyan Rift (CKR) volcanoes located ∼350 km to the north. The only rhyolitic tephra layer, a cryptotephra, correlates to the 73.7-ka BP (before present, taken as 1950 CE) Younger Toba Tuff (YTT) from Sumatra. Two of the CKR tephra layers provide direct ties with terrestrial sequences relevant to Middle Stone Age archaeology of the eastern Lake Victoria basin in Kenya. Absolute age estimates obtained by direct 40Ar/39Ar dating of 10 tephra layers are combined with six 210Pb and 162 14C dates covering the last 25-kyr and the well-constrained known age of the YTT to build a first absolute chronology for the full Lake Chala sediment sequence. The uninterrupted >250-kyr Lake Chala sedimentary archive represents a unique tephrostratotype sequence for eastern Africa, optimising the chronological value of tephra correlations in regional palaeoenvironmental, archaeological and volcanological research. Further study of cryptotephra in the Lake Chala sequence and additional geochemical characterisation and dating of ancient volcanic eruptions from nearby and further afield may eventually produce a regionally connected and detailed tephrostratigraphic framework for eastern equatorial Africa.

Reversed Holocene temperature–moisture relationship in the Horn of Africa

Anthropogenic climate change is predicted to severely impact the global hydrological cycle1, particularly in tropical regions where agriculture-based economies depend on monsoon rainfall2. In the Horn of Africa, more frequent drought conditions in recent decades3,4 contrast with climate models projecting precipitation to increase with rising temperature5. Here we use organic geochemical climate-proxy data from the sediment record of Lake Chala (Kenya and Tanzania) to probe the stability of the link between hydroclimate and temperature over approximately the past 75,000 years, hence encompassing a sufficiently wide range of temperatures to test the ‘dry gets drier, wet gets wetter’ paradigm6 of anthropogenic climate change in the time domain. We show that the positive relationship between effective moisture and temperature in easternmost Africa during the cooler last glacial period shifted to negative around the onset of the Holocene 11,700 years ago, when the atmospheric carbon dioxide concentration exceeded 250 parts per million and mean annual temperature approached modern-day values. Thus, at that time, the budget between monsoonal precipitation and continental evaporation7 crossed a tipping point such that the positive influence of temperature on evaporation became greater than its positive influence on precipitation. Our results imply that under continued anthropogenic warming, the Horn of Africa will probably experience further drying, and they highlight the need for improved simulation of both dynamic and thermodynamic processes in the tropical hydrological cycle.

Isoprenoidal GDGTs and GDDs associated with anoxic lacustrine environments

We examined membrane-spanning archaeal lipids using ultra high pressure liquid chromatography-high resolution mass spectrometry (UHPLC-HRMS) in a suite of sediment samples from both cored sequences (Messel oil shale and Lake Chala) and surface sediments (Azorean lakes) encompassing ancient and modern (Eocene to Present) lacustrine environments. Additionally we compared the lacustrine data to those of marine (Mediterranean cored sequences, Arabian Sea surface sediments and Monterey outcrop sediments) and hypersaline sediments (Vena del Gesso marls) as well as marine suspended particulate matter (SPM) from the Black Sea. Regular isoprenoidal glycerol dialkyl glycerol tetraethers (GDGTs) and glycerol dialkyl diethers (GDDs) were the most abundant membrane-spanning lipids in all investigated settings (>90 % and 84 % respectively). Interestingly, GDGTs with a cyclohexyl ring (S-GDGTs) were also present in almost all investigated lake sediments, in relative abundances of ca. 2–7 % and, for the first time, also their S-GDD counterparts were detected (2–10 %). The producers of S-GDGTs are still unknown, however our results show that it is likely that bottom water anoxia (both seasonally induced or permanent) is the driving factor for the production of these lipids, whereas previous studies suggested euxinia was required for production. Unsaturated GDGTs (uns-GDGTs, ca. 2 %) were only detected in Lake Chala sediments and surface sediments from Azorean lakes, but without accompanying uns-GDDs. GMGTs, glycerol monoalkyl glycerol tetraethers, were present in Messel oil shale and marine samples, while GMDs were only found in Messel oil shale.

Depositional history of Lake Chala (Mt. Kilimanjaro, equatorial East Africa) from high-resolution seismic stratigraphy

Sediments deposited in Lake Chala (Kenya/Tanzania) constitute a high-resolution archive of past climate and environmental change in equatorial East Africa spanning two glacial-interglacial cycles. To correctly interpret the proxy records it contains, it is crucial to understand the evolution of lacustrine sedimentation in this volcanic crater basin. Building on previous seismic stratigraphic analysis by Moernaut et al. (2010) of a dense grid of 37 km high-resolution seismic reflection profiles with up to 270 ms two-way travel time (ca. 210 m depth) of sub-bottom penetration, this study presents a seismic-based reconstruction of the complete depositional history of Lake Chala as well as a first-order age model for the major documented stages in lake evolution. The seismic stratigraphic sequence comprises 16 distinct and finely-stratified units (U1-U16, youngest to oldest), grouped into five major depositional stages. Stage I (U16, ca. 249-212 ka) marks the initiation of sedimentation in an originally ring-shaped depositional area surrounding two central tuff cones emerging from the basin floor. Stage II (U15-U12, ca. 212-114 ka) represents the onset of basinwide sedimentation above the tuff cones, implying a gradual rise in lake depth and shift to more strictly hemipelagic sedimentation. Stage III (U11-U8, ca. 114-97 ka) represents the development of a relatively flat lake floor during a period of significantly reduced lake depth. Stage IV (U7-U4, ca. 97–20.5 ka) is again characterized by largely undisturbed hemipelagic sedimentation under mostly high lake-depth conditions. Stage V (U3-U1, 20.5 ka BP to Present) represents the establishment of the present-day, very broad and flat basin floor under fluctuating lake level. Reassessing the Moernaut et al. (2010) suggestion of a minor disconformity at ca. 100 m sub-bottom depth, we here interpret this seismic feature as a thick turbidite related to a mass wasting event. Consequently we can affirm continuity of lacustrine sedimentation in the depocenter of Lake Chala throughout the past ca. 250,000 years.

Seasonal and multi-annual variation in the abundance of isoprenoid GDGT membrane lipids and their producers in the water column of a meromictic equatorial crater lake (Lake Chala, East Africa)

Isoprenoid glycerol dialkyl glycerol tetraethers (isoGDGTs) are membrane lipids of Archaea. Organic biomarker proxies associated with these lipids, such as the TEX86 paleothermometer and Branched and Isoprenoid Tetraether (BIT) index, are often used in paleoenvironmental reconstructions for the marine environment, but their general applicability in lacustrine settings is hampered by limited understanding of the biological sources and environmental drivers influencing isoGDGT production. To validate the use of isoGDGT proxies in lakes, we studied the occurrence of isoGDGTs in Lake Chala, a permanently stratified (meromictic) crater lake in equatorial East Africa. We analyzed the abundance and distribution of isoGDGTs in 17 depth profiles of suspended particulate matter (SPM) collected monthly between September 2013 and January 2015, and compared this with the abundance and composition of archaea based on 16S rRNA gene and quantitative PCR analysis. Both isoGDGTs and archaeal abundance in the SPM were exceptionally low throughout the study period. In the oxygenated part of the water column, higher fractional abundances of crenarchaeol are matched by a predominance of the ammonia-oxidizing Thaumarchaeota I.1b that are known to produce this GDGT, whereas deep anoxic water layers are characterized by high fractional abundances of GDGT-0 as well as the anaerobic heterotrophic Group C3 MCG Bathyarchaea and specific euryarchaeotal methanogens. Analysis of intact polar lipid (IPL) isoGDGTs using SPM depth profiles from three months representing distinct seasons during the study period revealed the presence of several IPLs of GDGT-0 in the anoxic lower water column, which are rarely found in natural settings. IPL GDGT-0 with a phosphatidylglycerol (PG-), monohexose-phosphatidylglycerol (MH-PG-) and dihexose-phosphatidylglycerol (DH-PG-) head-group was typically only present just above the lake bottom at 90 m depth and probably reflect specific communities of anaerobic archaea. We also determined the flux and distribution of isoGDGTs in settling particles collected monthly between November 2006 and January 2015 from a sediment trap suspended at 35 m water depth to assess seasonal and inter-annual variability in surface-water isoGDGT production, and compared this with the temporal distribution of isoGDGTs in the 25,000-year long sediment record from Lake Chala. Monthly variation of isoGDGTs in the 98-month settling-particles record did not show a strong annual pattern related to seasonal water-column mixing and stratification, likely because the oxycline was regularly situated below sediment-trap depth. Episodes of high GDGT-0 concentrations relative to crenarchaeol in the settling particles can therefore be linked to periods of exceptionally shallow oxycline depth, which suppresses the thaumarchaeotal bloom. During such intervals, TEX86-based paleotemperatures are not reliable because isoGDGT input from other archaeal sources disproportionally influences TEX86 values and creates a cold-temperature bias. Additionally, the abundance of the crenarchaeol isomer relative to crenarchaeol (f[CREN']) gradually increases during such episodes of high GDGT-0/crenarchaeol ratio, suggesting increasing dominance of Group I.1b over Group I.1a Thaumarchaeota, and might prove a good marker for prolonged shallow-oxycline conditions. Most importantly, the associated near-absence of crenarchaeol during times of strong upper-water-column stratification results in high BIT-index values. We propose that this suppression mechanism may be the principal driver of BIT-index variation in the sediment record of Lake Chala, and the main source of observed congruence between the BIT index and climate-driven lake-level variation on long time scales.

Anoxic in situ production of bacterial GMGTs in the water column and surficial bottom sediments of a meromictic tropical crater lake: Implications for lake paleothermometry

Branched glycerol monoalkyl glycerol tetraethers (brGMGTs) are membrane-spanning lipids which were initially identified in marine settings and have more recently been found in peats and lake sediments. In the latter settings, their abundance relative to that of the branched glycerol dialkyl glycerol tetraethers (brGDGTs) appears to increase under warmer climate conditions. Furthermore, their relative distribution in bottom sediments from an altitudinal transect of East African lakes has been linked to local mean annual air temperature (MAAT). To shed light on their sources and identify potential environmental factors driving their production in lakes, we investigated their occurrence and distribution in the water column, surficial lake-bottom sediments, and catchment soils of Lake Chala, a permanently stratified (meromictic) tropical crater lake in East Africa. Data from the water column comprise both suspended particulate matter (SPM) collected monthly at eight depth intervals between 0 and 80 m for 17 consecutive months, and settling particles collected monthly at a depth of 35 m over a period of 53 months. In catchment soils, brGMGTs are either relatively scarce or absent. In the water column, their occurrence is dominated by four of the seven known brGMGTs and mostly limited to the anoxic zone. Whereas the spatial distribution and concentration of brGMGTs in SPM were strongly influenced by the seasonal cycle of strong water-column stratification alternating with deep mixing, this trend is not consistent on the multi-year timescale of the settling-particles record. Moreover, their relative distribution in both SPM and settling particles did not respond to temperature variation during the studied interval. In contrast to the water column, surficial lake-bottom sediments contain the full suite of known brGMGTs in a distinct and spatially uniform fractional abundance, strongly suggesting that the majority of brGMGT production takes place there. BrGMGT-inferred MAAT for the Chala area reasonably estimates measured MAAT and conforms to the East African lake brGMGT calibration. Our results have important implications for the use of brGMGTs as proxy for MAAT, in that outside of the equatorial zone the presumably greater offset between bottom-water temperature and MAAT may create a bias towards cold-season air temperature. Regardless, the more singular source of brGMGTs in lake sediments is an advantage for paleotemperature reconstruction compared to brGDGTs, which several studies now indicate to have a mixed aquatic and terrestrial source of which the relative contribution cannot easily be disentangled or assumed to have been constant through time.

Climate-human-landscape interaction in the eastern foothills of Mt. Kilimanjaro (equatorial East Africa) during the last two millennia

The Mt. Kilimanjaro region is known for its long history of intensive agriculture, but the temporal extent of human activity and its impact on the regional ecosystem are not well known. In this study, climate-human-landscape interactions during the past ~2200 years were examined using climate and vegetation proxies extracted from the continuous and high-resolution sediment record of Lake Chala. Ancient-to-modern regional human activity is documented against a backdrop of long-term vegetation dynamics in the low-elevation savanna woodland southeast of Mt. Kilimanjaro and riparian forest within Chala crater. During prolonged dry periods (~1170–1300 CE), succulent dry crater forest expanded relative to the moist lakeshore forest. The savanna landscape surrounding Chala crater was relatively stable through time, except that savanna grasses were stimulated by higher precipitation, consistent with the fuel-limited fire regime evidenced in the charcoal record. Expansion of subalpine ericaceous vegetation and a general decline in Afromontane forest taxa on Mt. Kilimanjaro after 550 CE may reflect a lowering of its upper forest line. The earliest robust signature of human influence on regional vegetation involves an increase in ruderal (weedy) plant taxa around 1100 CE, possibly associated with the development of Chagga homegardens and associated agroforestry in the submontane forest zone. A first hint of cereal agriculture (likely sorghum) is observed around 1550 CE, followed by a more robust signature from 1780 CE onwards which likely reflects the start of lowland irrigation agriculture. From 1780 CE we also find the first undisputed appearance of maize, introduced to East Africa about a century earlier.

Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake

Abstract. Lake sediments are important archives of continental climate history, and their lipid biomarker content can be exploited to reconstruct paleoenvironmental conditions. Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are bacterial membrane lipids widely used in paleoclimate studies to reconstruct past temperature. However, major gaps still exist in our understanding of the environmental controls on in situ (i.e. aquatic) production in lake systems. In Lake Chala, a permanently stratified tropical crater lake in East Africa, we determined the concentrations and fractional abundances of individual brGDGTs along depth profiles of suspended particulate matter collected monthly from September 2013 to January 2015 and in settling particles collected monthly at 35 m water depth from August 2010 to January 2015 and compared these brGDGT distributions with those in surficial lake bottom sediments and catchment soils. We find that brGDGTs are primarily produced within the water column and that their concentrations and distributions vary greatly with depth and over time. Comparison with concentration–depth profiles of the monthly distribution and abundance of bacterial taxa, based on 16S rRNA gene amplicon sequencing and quantification, indicates that Acidobacteria are likely not the main producers of brGDGTs in Lake Chala. Shallowing of the oxic–anoxic boundary during seasonal episodes of strong water column stratification promoted production of specific brGDGTs in the anoxic zone. BrGDGT distributions in the water column do not consistently relate with temperature, pH, or dissolved-oxygen concentration but do respond to transitions between episodes of strong stratification and deep (but partial) lake mixing, as does the aquatic bacterial community. Hence, the general link between brGDGT distributions and temperature in brGDGT-based paleothermometry is more likely driven by a change in bacterial community composition than by membrane adaptation of specific members of the bacterial community to changing environmental conditions. Although temperature is not the principal driver of distributional changes in aquatic brGDGTs in this system, at least not during the 17-month study period, abundance-weighted and time-integrated averages of brGDGT fractional abundance in the 53-month time series of settling particles reveal systematic variability over longer timescales that indirectly relates to temperature. Thus, although we do not as yet fully understand the drivers of modern-day brGDGT fluxes and distributions in Lake Chala, our data do support the application of brGDGT paleothermometry to time-integrated archives such as sediments. Highlights. BrGDGTs in the tropical African lake Chala are produced in situ. Acidobacteria are not the dominant source of aquatic brGDGTs. Stratification and mixing drive aquatic brGDGT production and their signature.

Seasonality in diet and feeding habits of the endemic Chala tilapia (Oreochromis hunteri) and two introduced tilapiine cichlids in Lake Chala, East Africa

Oreochromis cf. korogwe and Coptodon rendalli, two tilapiine fishes introduced to Lake Chala (Kenya/Tanzania) ~ 40 years ago, may negatively affect the endemic Chala tilapia (Oreochromis hunteri) by competition for food. However, the actual threat posed by the introduced cichlids cannot be assessed without data on the local feeding habits of all three species. This paper describes the diet of O. hunteri and both introduced species, focusing on seasonal changes in food-source availability. Microscopic analysis of gut content in 35 fishes collected over a 20-month period was compared with the composition of littoral food sources and seasonal variation in the limnetic phytoplankton and complemented with exploratory stable-isotope analysis of fish tissue. We found that all three tilapiines in Lake Chala are herbivorous, and during most of the year, they feed on algae and organic detritus on and between rocks in the littoral zone. However, in July–September they migrate to open water to feed on blooming phytoplankton. Interspecific differences in gut content and stable-isotope composition suggest that O. hunteri may have a competitive advantage over the two newcomers by making better use of this seasonal extra food resource. However, this advantage may erode when continuing climate change starts affecting the bloom’s predictability.

Geochemical Characterization and Suitability of Surface and Sub-surface Waters for Irrigation in Lake Chala Catchment Area, Kenya

Lake Chala is a transboundary fresh water lake characterized by lack of effluent surface drainage and is located in southwestern Kenya on the Kenya-Tanzania border. This is a semiarid region frequently facing severe water scarcity especially during drought seasons. The major economic activities undertaken within the lake's catchment area include small-scale rain fed agriculture, which accounts for about 75-80% of household income. Over reliance on rain-fed agriculture has often had negative impacts on the people in this area due to water scarcity occasioned by unreliable rains. As such, there is need to tap the lake water for irrigation purposes. In order to determine the geochemical characteristics and suitability of the lake's catchment waters for irrigation purposes, water samples were collected on the Kenya and Tanzania sides of Lake Chala from eleven (11) sites in March 2011 and subjected to analysis for chemical characteristics. Based on hydro-chemical facies, ten water samples show that calcium-Magnesium-bicarbonate waters predominates in the catchment area, while one water sample from a shallow well is a calcium-magnesium-chloride type. The suitability of the water for irrigation purposes was evaluated based on sodium percent, residual sodium carbonate, sodium adsorption ratio and salinity hazard and found to be suitable for irrigation purposes. Crop type and soils may also have a profound influence on water suitability for irrigation. It is, therefore, herein recommended that further study be undertaken to evaluate the suitability of soils for specific crop types.

Reconstructing East African monsoon variability from grain-size distributions: End-member modeling and source attribution of diatom-rich sediments from Lake Chala

Grain-size analysis and end-member modeling of the clastic fraction of the 25-kyr sediment sequence from Lake Chala, a meromictic crater lake on the lower east slope of Mt. Kilimanjaro, reveal crucial aspects of climate-driven environmental change in equatorial East Africa since the Last Glacial Maximum. The finely laminated sediments of Lake Chala contain only up to 40% of clastic components, the rest are mainly diatom frustules and amorphous organic matter. Measured grain-size distributions were split into six statistically meaningful end members, of which four could be linked to a distinct source and transport mechanism of clastic mineral input: fine aeolian dust from distal sources (EM1), fine catchment runoff (EM2), coarser aeolian dust from proximal sources (EM5) and coarse erosive material from the upper crater slopes (EM6). The two other end members (EM3 and EM4) represented frustules of the two most common diatom taxa in Lake Chala, Afrocymbella barkeri and Nitzschia fabiennejansseniana, which had (partly) survived sample pre-treatment.Temporal variation in normalized abundance of the two dust-derived end members are valuable proxies for past changes in monsoon circulation over equatorial East Africa. During Northern Hemisphere cold periods (e.g., Last Glacial Maximum and Younger Dryas) the Inter-Tropical Convergence Zone shifted southward, enhancing northeasterly monsoon winds in the Lake Chala area and increasing advection of fine dust from the dry Horn of Africa region. Simultaneously, more modest continental heating reduced the prevalence of small-scale atmospheric turbulence, and thus the occurrence of dust devils, resulting in reduced influx of coarse dust from drylands nearby. Conversely, abrupt intensification of the southeasterly monsoon at the onset of the Holocene is recorded by an abrupt increase in the amount of coarse dust delivered to Lake Chala. Temporal variation in the end members representing catchment run-off (EM2) and erosion (EM6) mainly reflect changes in lacustrine sedimentation dynamics associated with major lake-level fluctuation, as evidenced by other paleoenvironmental proxies. Overall this study shows that subdivision of the clastic fraction of lacustrine sediments into statistically robust grain-size end members can provide multiple independent and quantitative proxies which help constrain reconstructions of a region’s multi-faceted climate history.

History of scoria‐cone eruptions on the eastern shoulder of the Kenya–Tanzania Rift revealed in the 250‐ka sediment record of Lake Chala near Mount Kilimanjaro

ABSTRACTReconstructions of the timing and frequency of past eruptions are important to assess the propensity for future volcanic activity, yet in volcanic areas such as the East African Rift only piecemeal eruption histories exist. Understanding the volcanic history of scoria‐cone fields, where eruptions are often infrequent and deposits strongly weathered, is particularly challenging. Here we reconstruct a history of volcanism from scoria cones situated along the eastern shoulders of the Kenya–Tanzania Rift, using a sequence of tephra (volcanic ash) layers preserved in the ~250‐ka sediment record of Lake Chala near Mount Kilimanjaro. Seven visible and two non‐visible (crypto‐) tephra layers in the Lake Chala sequence are attributed to activity from the Mt Kilimanjaro (northern Tanzania) and the Chyulu Hills (southern Kenya) volcanic fields, on the basis of their glass chemistry, textural characteristics and known eruption chronology. The Lake Chala record of eruptions from scoria cones in the Chyulu Hills volcanic field confirms geological and historical evidence of its recent activity, and provides first‐order age estimates for seven previously unknown eruptions. Long and well‐resolved sedimentary records such as that of Lake Chala have significant potential for resolving regional eruption chronologies spanning hundreds of thousands of years.

Influence of plant growth form, habitat and season on leaf-wax n-alkane hydrogen-isotopic signatures in equatorial East Africa

Abstract Leaf-wax n-alkanes are produced by terrestrial plants, and through long-term preservation in sediments their stable hydrogen-isotopic signature (δ2Hwax) provides useful information on past hydrological variation for paleoclimate reconstructions. However, gaps remain in our understanding of the relationships between the isotopic signatures of leaf waxes and the plants’ source water. In this study, we investigated the influence of plant growth form, habitat and season on the distribution patterns and δ2Hwax values of 14 plant species (among which are two grasses, five trees and seven shrubs) sampled during four successive dry and wet seasons in three distinct habitats around Lake Chala in equatorial East Africa. Variation in δ2Hwax was analyzed with linear mixed-effect models and compared with the associated values of xylem water (δ2Hxylem), leaf water (δ2Hleaf) and biosynthetic hydrogen fractionation (ebio). Our results show that plant growth form was the most important driver of modern-day δ2Hwax variability in the study area, and that differences in δ2Hwax among habitats to a large extent reflect how each major growth forms is represented in those habitats. Individual plant species appear to express substantial species-specific isotopic fractionation that cannot be attributed to the tested external factors but rather seem to depend on intrinsic (e.g., plant phenological and biosynthesis-related) factors. For the purpose of calibrating δ2Hwax signatures against vegetation types, it is thus crucial to analyze representative samples of the plant communities present in the study area. Our results further indicate that paleohydrological studies in regions receiving rain from multiple moisture sources must take into account possible seasonal bias in the δ2Hwax signature relative to annual rainfall, due to unequal use of those moisture sources by the plants. Finally, the strong influence of plant growth form on δ2Hwax values argues for δ2Hwax variation in paleo-records being evaluated in conjunction with independent proxy data on changes in vegetation composition. Differences in n-alkane distribution patterns among trees, shrubs and grasses (e.g., average chain length, carbon preference index and C31/(C29 + C31) ratio) may provide such proxies, and can be produced from the same leaf-wax n-alkane dataset used to determine δ2Hwax.

Recurrent changes in cichlid dentition linked to climate‐driven lake‐level fluctuations

AbstractClimate‐induced habitat change has often been invoked as an important driver of speciation and evolutionary radiation in cichlid fishes, yet studies linking morphological change directly to long‐term environmental fluctuations are scarce. Here, we track changes through time in the oral dentition of Oreochromis hunteri, the endemic and only indigenous fish species inhabiting the East African crater Lake Chala (Kenya/Tanzania), in relation to climate‐driven lake‐level fluctuations during the last 25,000 yr. Fossil teeth were recovered from six periods representing alternating high and low lake‐level stands associated with late‐Pleistocene and Holocene trends in rainfall and drought. To construct a reference framework for morphological variation in fossil assemblages, we first analyzed the variability in oral tooth morphology within the modern‐day fish population. These analyses established that, like other cichlids, O. hunteri gradually replace their bicuspid/tricuspid oral dentition with more unicuspid teeth as they grow. In the fossil assemblages, we found systematic and recurrent changes in the relative abundance of these oral tooth types, with a higher proportion of unicuspids during low‐stands. Moreover, O. hunteri living during low‐stands systematically developed unicuspid dentition at a smaller body size, compared with conspecifics living during high‐stands. Considering that low‐stand conditions created a sizable area of oxygenated soft‐bottom habitat that is lacking during high‐stands, we propose that the associated change in oral dentition reflects the fishes’ exploitation of this new habitat either for feeding or for reproduction. The recurrent nature of the observed shifts provides evidence for the ability of O. hunteri to systematically adapt to local habitat change, and strongly suggests that morphological change in oral dentition promoted its long‐term population persistence in an aquatic ecosystem presenting the dual challenge of being both sensitive to climate change (creating constantly shifting selective pressures) and isolated from surrounding populations (limiting gene flow). In Lake Chala, ancient climate‐driven lake‐level fluctuations did not directly promote speciation in O. hunteri, but the population bottlenecks they may have caused potentially contributed to its divergence from sister species Oreochromis jipe.

The origin and future of an endangered crater lake endemic; phylogeography and ecology of Oreochromis hunteri and its invasive relatives

Cichlids of the genus Oreochromis (“Tilapias”) are intensively used in aquaculture around the world. In many cases, when “Tilapia” were introduced for economic reasons to catchments that were home to other, often endemic, Oreochromis species, the loss of native species followed. Oreochromis hunteri is an endemic species of Crater Lake Chala on the slopes of Mount Kilimanjaro and is part of a small species flock in the upper Pangani drainage system of Tanzania. We identified three native and three invasive Oreochromis species in the region. Reconstructing their phylogeography, we found that O. hunteri is closely related to, but distinct from the other members of the upper Pangani flock. However, we found a second, genetically and phenotypically distinct Oreochromis species in Lake Chala whose origin we cannot fully resolve. Our ecological and ecomorphological investigations revealed that the endemic O. hunteri is currently rare in the lake, outnumbered by each of three invasive cichlid species. It is mitochondrially, phenotypically and trophically distinct from all others. The occurrence of the formerly abundant O. hunteri in such small numbers, its narrow habitat restriction and its limited morphological variability suggest recent population decline and loss of niche breadth in this critically endangered endemic cichlid species.

Correction to 'The onset of ecological diversification 50 years after colonization of a crater lake by haplochromine cichlid fishes'.

Adaptive radiation research typically relies on the study of evolution in retrospective, leaving the predictive value of the concept hard to evaluate. Several radiations, including the cichlid fishes in the East African Great Lakes, have been studied extensively, yet no study has investigated the onset of the intraspecific processes of niche expansion and differentiation shortly after colonization of an adaptive zone by cichlids. Haplochromine cichlids of one of the two lineages that seeded the Lake Victoria radiation recently arrived in Lake Chala, a lake perfectly suited for within-lake cichlid speciation. Here, we infer the colonization and demographic history, quantify phenotypic, ecological and genomic diversity and diversification, and investigate the selection regime to ask if the population shows signs of diversification resembling the onset of adaptive radiation. We find that since their arrival in the lake, haplochromines have colonized a wide range of depth habitats associated with ecological and morphological expansion and the beginning of phenotypic differentiation and potentially nascent speciation, consistent with the very early onset of an adaptive radiation process. Moreover, we demonstrate evidence of rugged phenotypic fitness surfaces, indicating that current ecological selection may contribute to the phenotypic diversification.

Origin, formation and environmental significance of des-A-arborenes in the sediments of an East African crater lake

Non-hopanoid pentacyclic triterpenoids occur widely in lake sediments, but their biological sources and diagenetic pathways are not fully resolved. We tentatively identified a number of des-A-arborene isomers occurring in relatively high abundance in the 25,000 year (25 kyr) sedimentary record of Lake Chala, a deep crater lake in tropical East Africa. The mono-, di- and tri-unsaturated des-A-arborenes are transformation products of isoarborinol/arborinone. These precursors have an aquatic source and are most likely biosynthesized by algae or aerobic bacteria in the epilimnion. The relatively depleted δ13C values (on average −32.3‰ ± 1.3‰) of des-A-arbor-9(11)-ene are consistent with an aquatic source (algae or aerobic bacteria). In general, isoarborinol and its microbially induced transformation products are found in present and ancient tropical lacustrine settings (typically crater lakes) with permanently anoxic bottom waters and sediments. Based on molecular mechanics calculations of des-A-arborenes, it is clear that these transformation products are not in thermodynamic equilibrium, strongly indicating that their formation is microbially mediated. Subtle temporal and spatial differences in the microbial community might therefore not only dictate the variable relative contributions of different des-A-arborenes found in the sediments of Lake Chala over the last 25 kyr, but also explain the distribution of arborane derivatives in comparable crater-lake settings elsewhere.