Lake Biwa System Research Articles

Current Genetic Status of Nagaremon-charr, a Threatened Morphotype of Salvelinus leucomaenis in the Ane River, Lake Biwa System, Central Japan, With Comments on Its Conservation.

Stream-dwelling white-spotted charr, Salvelinus leucomaenis, populations tend to have unique color and spot patterns in different regions and may even display stream-specific patterns. An extreme edge of such diversity, found in individuals with atypical body color patterns (so-called nagaremon-type charr, a rare morphotype of Salvelinus leucomaenis [hereafter termed nagaremon-charr]), sympatrically occurring with normal-charr, has been reported from only six small isolated populations in Japan. Based on morphological and ecological perspectives, nagaremon-charr has been considered as an intraspecific color variant of white-spotted charr, although the genetic status of nagaremon-charr has not been determined. In this study, genetic diversity and population structure of the nagaremon-charr in a tributary of the Ane River (Lake Biwa system) were investigated through microsatellite and mtDNA analyses. Nagaremon-charr and sympatric normal-charr in the tributary shared the mtDNA haplotypes and were assigned to the same cluster in the STRUCTURE analysis and discriminant analysis of principal components (DAPC). These results suggested that nagaremon-charr in the Ane River is an intra-populational specific color variant of white-spotted charr. Above a waterfall, nagaremon-charr specimens exhibited extremely reduced genetic diversity, indicating that genetic drift may account for the fixation of the nagaremon-morphotype. Normal-charr below the waterfall clustered separately from hatchery-reared charr, indicative of native status of the former. Thus, both nagaremon-charr and normal-charr in the entire Ane River tributary should be conserved.

Complete F mitochondrial genomes of two freshwater mussels from the Lake Biwa system in Japan: Beringiana fukuharai and Sinanodonta tumens

We determined the complete mitochondrial sequences of female-transmitted (F) mitogenomes of six unionid specimens from the Lake Biwa system, Japan. Their gene contents and orders agreed with those of the typical F mitogenome of freshwater mussels. Molecular phylogenetic analysis using fifteen previously identified partial COI and 12 (six previously identified and six newly determined) whole mitogenome sequences revealed that five of the six mitogenomes (LC592401, LC592402, LC592403, LC592408, and LC592410) were those of Beringiana fukuharai, while the remaining one (LC592406) was Sinanodonta tumens.

Complete female-transmitted mitochondrial genomes of two freshwater mussels from the Lake Biwa system in Japan: Nodularia douglasiae and N. nipponensis

We determined the complete mitochondrial sequences of female-transmitted (F) mitogenomes of two unionid specimens from the Lake Biwa system, Japan. Their gene contents and orders agreed with those of the typical F mitogenome of freshwater mussels. Molecular phylogenetic analysis using 20 previously identified partial COI and seven (five previously identified and two newly determined) whole mitogenome sequences revealed that one of the two mitogenomes was that of Nodularia douglasiae, while the other was N. nipponensis.

A DNA mini-barcoding system for endangered unionid mussels in the Lake Biwa system in Japan

A mini-barcoding system was developed to help identify endangered unionid mussels in the Lake Biwa system in Japan. A single primer set was designed to amplify a ca. 140-bp barcode fragment based on the published mitochondrial 16S rRNA gene sequences (ca. 350 bp) of Japanese unionids. The new primers successfully amplified genomic DNA from the foot tissues of 81 specimens of 12 target taxa from the Lake Biwa region. Sequencing, BLAST-searches and phylogenetic analyses of the amplified fragments confirmed that the mini-barcode had the same identification ability as the original sequences for Lake Biwa taxa. The mini-barcoding system also obtained the short barcodes from excreted materials, indicating its usefulness in nondestructive identification of these mussels.

Morphological variation associated with trophic niche expansion within a lake population of a benthic fish

Ecological theory suggests that generalist species should have traits with multiple adaptive peaks. Consequently, in heterogeneous environments such adaptive landscapes may lead to phenotypic divergence that becomes fixed in populations via reproductive isolation, thus driving speciation. However, contrary to this expectation, the process of ecological diversification in wild populations is not always associated with obvious trait divergence and reproductive isolation due to some ecological and geographic constrains. To examine the ecological conditions that promote (or inhibit) divergence is quite important to improve our understanding of the underlying mechanisms. Here we examine how the patterns of trait variation (divergence/non-divergence) are determined in relation to ecological niche expansion and gene flow using a benthic fish, Pseudogobio esocinus, in the Lake Biwa system, Japan. The fish exhibited various patterns of morphological variation in mouth parts among populations. Lake fish tended to have a smaller mouth compared with river fish and also showed remarkable individual variations within some local samples. Lake fish utilized chironomid larvae as the primary prey, as in riverine fish. But, fish with smaller and narrower mouths utilized significantly higher proportions of amphipods (a novel prey unique to the lake) as their secondary prey. Microsatellite analysis detected no genetic structuring in the Lake Biwa catchment, suggesting no reproductive separation among eco-morphologically divergent individuals. Our results exemplify population niche expansion associated with continuous eco-morphological variation without divergence, and provide insights into the role of non-discrete diversification for thriving in heterogeneous environments.

マルチプレックスPCR 法を用いた琵琶湖水系産タモロコ属2種のミトコンドリアDNAの簡易識別法：手法開発と南湖の産着卵への適用

マルチプレックスPCR 法を用いた琵琶湖水系産タモロコ属2種のミトコンドリアDNAの簡易識別法：手法開発と南湖の産着卵への適用

Experimental infection of the digeneans to some congeneric snail species radiated in a single water system: Relative importance of local evolution and phylogenetic constraint

To determine the relative importance of local adaptation caused by host–parasite coevolution and resource tracking by the parasites, the susceptibility of the freshwater snail genus Semisulcospira to the digenean parasite genus Genarchopsis was investigated experimentally. Four snail species endemic to the Lake Biwa system in Japan and two non-endemic species were investigated. All but one species was also tested for local variation in susceptibility.Parasites were obtained from Takashima (mix population of Genarchopsis gigi and Genarchopsis chubuensis) and Nagahama (G. chubuensis). In endemic Semisulcospira, closely related specie pairs (Semisulcospira habei and Semisulcospira niponica, Semisulcospira decipiens and Semisulcospira nakasekoae) showed similar susceptibilities to parasites from both localities. S. habei and S. niponica were highly susceptible to parasites from Takashima, but were resistant to parasites from Nagahama. S. decipiens and S. nakasekoae showed moderate susceptibility to parasites from both localities. None of the endemic snail species showed a clear local variation in susceptibility. These results show that the susceptibility of endemic Semisulcospira to Genarchopsis is conservative and can be regarded as an example of resource-tracking. One of the non-endemic snails, Semisulcospira libertina, showed local variation in susceptibility. This variation was not related to the sympatry of the parasites used for the experimental infection, suggesting that it was not the result of local adaptation by parasites.

Constraint on radiocarbon age correction in Lake Biwa environment from the middle to late Holocene

Using data from previous studies and newly collected data, we compared the measured radiocarbon ages of molluscan shells, common reed (Phragmites australis) and pine needles (Pinus thunbergii) collected in 1966, 1970, 1990 and 2008 at Lake Biwa in Japan, and of archaeological samples, to examine radiocarbon reservoir effects at Lake Biwa. We also tested for differences in the radiocarbon reservoir effect between species and locations in the lake. The effects of nuclear bomb tests conducted in the 1950s and 1960s are clear, the offset between atmospheric 14C and the Lake Biwa freshwater 14C is larger for this period because the atmospheric 14C is so high. The semiclosed Lake Biwa system is in dynamic equilibrium with the atmosphere, resulting in the 14C content of the water following the changes in atmospheric 14C caused by nuclear testing. The shells collected after 1990 had radiocarbon ages that were 330–450 14C years older than those of the coeval atmosphere. The apparent differences in radiocarbon age (about 300 14C years) between shell fossils and wood samples excavated from the same layer of the submerged Awazu shell midden at Lake Biwa suggest that the radiocarbon reservoir effect also existed in the middle Holocene (the Middle Jomon period, about 5000years ago). Because the present-day average residence time of Lake Biwa water is 3–6years, its direct influence on the radiocarbon reservoir effect is small, which suggests that old carbon has been supplied into Lake Biwa.

Larger eggs at lower water temperature as a measure to assure effective hatchling size in the landlocked form of Ayu, Plecoglossus altivelis

Egg size is a critical life-history trait in which maternal investment is optimized to maximize maternal fitness. The adaptive significance of variable egg size among spawning groups of Ayu (Plecoglossus altivelis) landlocked in the Lake Biwa system was examined through field investigations and rearing experiments. Observed egg size variations were explained by the water temperature around spawning grounds established near the mouths of inlet streams. Two typical streams with different incubation temperatures showed similar maternal body sizes and hatchling sizes, but eggs attached to the stream bed were larger in the colder stream. An experiment that used eggs from a single clutch showed that a smaller hatchling size was obtained with a lower incubation temperature, indicating that the effect of differences in egg size on hatchling size can be canceled out by variations in incubation temperature. In general, larvae that are less than a certain threshold of effective body size are not expected to be assured of early success among conspecifics competing for foods. It is proposed that environments in which the incubation temperature varies favor variability in egg size to ensure that sufficient food is accessible to larvae.

Use of microsatellite DNA and otolith Sr:Ca ratios to infer genetic relationships and migration history of four morphotypes of Rhinogobius sp. OR

The genetic diversity and relationship among four morphotypes of Rhinogobius sp. OR, Gobiidae (“Tōshoku,” “Shinjiko,” “Gi-tōshoku,” and “Shimahire”) were investigated with seven microsatellite DNA loci, and amphidromy of these morphotypes was verified by strontium (Sr) and calcium (Ca) deposition in the otolith. Samples of “Tōshoku,” “Shinjiko,” “Gi-tōshoku,” and “Shimahire” were collected from, respectively, three, three, two, and four locations in Japan. Microsatellite analysis detected high genetic diversity (based on the number of alleles, allelic richness, and average observed heterozygosity) in the “Tōshoku” and “Shinjiko” morphotypes relative to the “Shimahire” morphotype; the “Gi-tōshoku” morphotype had an intermediate level of variation. Almost all pairwise FST values were significantly different from zero (P < 0.001), except between two populations of “Tōshoku.” Clear genetic independence was observed between the “Shinjiko” and “Shimahire” morphotypes in the Maruyama River. A principle component analysis based on microsatellite data indicated that the “Tōshoku,” “Shinjiko,” and “Gi-tōshoku” morphotypes were genetically similar. Furthermore, the three populations of “Tōshoku” were closely related each other, and two of those collected from the Lake Biwa system were a single population. There was, however, a high degree of genetic differentiation between “Shimahire” and the other morphotypes; moreover, there was high genetic divergence among four populations of the “Shimahire” morphotype. Amphidromous migratory histories were indicated by Sr:Ca ratios in two of three populations of the “Shinjiko” morphotype and in one of two “Gi-tōshoku” morphotypes, whereas all populations of the “Shimahire” morphotype were freshwater residents. The large genetic divergence and low genetic diversity in “Shimahire” are likely related to migration history.

Cosmogenic radionuclide 22Na in the Lake Biwa system (Japan): residence time, transport and application to the hydrology

Abstract Application of cosmogenic radionuclide 22 Na to limnological research was first successfully performed in the Lake Biwa system, Japan. The 22 Na was determined from large water samples of more than 500 L by using the ultra low-background Ge-detector installed at underground (Ogoya Lab.) after simple chemical separation. Extremely low 22 Na concentrations ranging from 19.9 to 32.7 mBq/m 3 and from 27.4 to 38.3 mBq/m 3 were found in the lake and river water samples, respectively. Mass balances of 22 Na from the watershed to river and lake were constructed by considering the atmospheric deposition of 22 Na. The mean residence times of 22 Na in the southern and northern basins of Lake Biwa were estimated as about 18 days and 5.4 years, respectively. Furthermore, the mean residence time of this atmospheric nuclide in the watershed was evaluated as about 7.3 years, whose value may be helpful in tracing the fate of contaminants with similar chemical properties in the watershed. The quantity of groundwater flow into the lake was also roughly estimated to be 1.6×10 9 m 3 /yr from the specific activity of 22 Na/Na.

Features of the reproductive ecology of the rock catfish Silurus lithophilus

Some aspects of the reproductive ecology of the rock catfish Silurus lithophilus (Siluriformes: Siluridae), a species endemic to the Lake Biwa system, were investigated from April to July in 1989–1994. Field observations were conducted at a rocky shoal, which was also a spawning ground of S. biwaensis, along the shore of the Seta River, the lake's outlet. Spawning of S. lithophilus occurred around midnight at shallow, rocky places on the shoal (5–70 cm in water depth) from early May to mid-July, starting earlier than S. biwaensis (mid-May to mid-July). Spawning tended to occur at low water temperatures irrespective of high-water events, unlike S. biwaensis, and in low densities (fewer than 8 fish per night) compared to S. biwaensis (1–45 fish per night). Although the rock catfish tended to appear and spawn at higher frequencies on nights when S. biwaensis spawned or appeared, it always avoided conflict with the latter species by spawning at sites far from those used by S. biwaensis or after S. biwaensis had left the vicinity. The survival of eggs of S. lithophilus might be favored by a strategy of diverting predator attention from them by synchronizing spawning nights with S. biwaensis.

Stereotyped sequence of mating behavior in the Far Eastern catfish, Silurus asotus , from Lake Biwa

Mating behavior of the Far Eastern catfish, Silurusasotus (Siluriformes: Siluridae), was observed in a ricefield system facing the shore of Lake Biwa in mid-May to early June in 1990–1997. A set behavioral sequence similar to those of two other silurid fishes, S. biwaensis and S. lithophilus, both endemic to the Lake Biwa system, was observed: “chasing,”“clinging,”“enfolding” while “squeezing” by the male, and “circling” by the spawning pair. This form of mating behavior is quite different from that of S. asotus reported from the Ooi River system in Kyoto Prefecture, which mainly spawns in running water in ditches.

Mating behavior of the rock catfish, Silurus lithophilus

The mating behavior of the rock catfish Silurus lithophilus (Siluriformes: Siluridae), a species endemic to the Lake Biwa system, was observed from May to July in 1989–1994 along the rocky shore of the lake's outlet, the Seta River. The mating behavior of S. lithophilus involved a certain behavioral sequence: “chasing,”“clinging,” and “enfolding” while “squeezing” by the male; and “circling” by the spawned pair. The mating behavior of this species was basically similar to that of S. biwaensis, but greatly different from that of S. asotus, which spawns in running water (in ditches). The mating behavior of S. lithophilus (and S. biwaensis) might have developed as an adaptation to lentic environments such as the shores of the large river or the lake.

Egg size variation in landlocked ayu from Lake Biwa system

Egg size variation in landlocked ayu from Lake Biwa system