This paper presents a state-of-the-art overview of water and energy optimisation methods with applications to Kraft pulp mills. The main conclusions are highlighted, and several research gaps are identified and proposed for future research. Kraft processes have the potential to be adapted to biorefineries for producing biofuels and other high-value products from wood biomass. Biorefineries enable opportunities to increase the revenue of the process, reduce fossil fuels usage and greenhouse gas emissions. However, to ensure an effective Kraft process transformation, the existing mill infrastructure needs to be consolidated. In this sense, the water system, the heat exchanger network and the utility system should all be optimised together. A series of systematic methods (process integration-conceptual and mathematical programming) have been identified in the literature, along with the results of several case studies that reduce water and energy consumption in Kraft processes. Initial studies in this field considered and solved separate water and energy integration problems, but recent works have been focused on the development of methods for combined water and energy integration and their application to various processes. Typical savings lead to freshwater consumption decreases between 20 and 80% and energy consumption reductions between 15 and 40%.