Java Server Pages Research Articles

KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing.

Since 2012, the Center for Genome Science of the Korea National Institute of Health (KNIH) has been sequencing complete genomes of 1722 Korean individuals. As a result, more than 32 million variant sites have been identified, and a large proportion of the variant sites have been detected for the first time. In this article, we describe the Korean Reference Genome Database (KRGDB) and its genome browser. The current version of our database contains both single nucleotide and short insertion/deletion variants. The DNA samples were obtained from four different origins and sequenced in different sequencing depths (10× coverage of 63 individuals, 20× coverage of 194 individuals, combined 10× and 20× coverage of 135 individuals, 30× coverage of 230 individuals and 30× coverage of 1100 individuals). The major features of the KRGDB are that it contains information on the Korean genomic variant frequency, frequency difference between the Korean and other populations and the variant functional annotation (such as regulatory elements in ENCODE regions and coding variant functions) of the variant sites. Additionally, we performed the genome-wide association study (GWAS) between Korean genome variant sites for the 30×230 individuals and three major common diseases (diabetes, hypertension and metabolic syndrome). The association results are displayed on our browser. The KRGDB uses the MySQL database and Apache-Tomcat web server adopted with Java Server Page (JSP) and is freely available at http://coda.nih.go.kr/coda/KRGDB/index.jsp.Availability: http://coda.nih.go.kr/coda/KRGDB/index.jsp

Information architecture for the implementation of a technological platform that manages research production in higher education institutions

Scientific communication and diffusion is one of the challenges of higher education institutions, related to the implementation of strategies of free access to the scientific and technological productivity of the teachers and researchers of the institutions, which allow to increase the visibility and impact of the research, for which a model of information architecture of the technological platform for the management of the investigative production of teachers and researchers was designed, under an environment focused on satisfying the information needs of the users that allows to organize, to group and to visualize the information by means of metadata. The research is of exploratory-descriptive type, through which the products of science, technology and innovation that should be visible in the technological platform were identified, generating as a result an architecture model-view-controller, with data storage in a relational database, which has access through a RESTful API made in Java, the views and controllers were made in HyperText markup language and JavaServer pages respectively. MySQL was used as a relational database engine to store information and MYSQL Workbench as a platform for the construction of the relationship model between entities, tables and columns; which will be used as a framework for the design, planning and implementation of the technological platform.

A Flipped Classroom-Based Education System for College English Teaching

The flipped classroom (FC) is a novel teaching mode combining traditional class-room and computer network technology. This paper attempts to design a FC-based education system for college English teaching, which is critical to the quali-ty of English teaching in colleges. In our research, a college English education system is established based on SQL server and FC. The architecture and func-tional modules of the system were discussed in details. Specifically, the system architecture was created based on the browser/server (B/S) structure, the data management was realized by SQL server 2008, and the system functions were designed and achieved by JavaServer Pages (JSP). The proposed system was tested in an actual application. The results confirm that the system can meet the teaching demand, arouse the students’ interest in learning and improve the effect of English teaching.

A Java web application based MDSplus data analysis and real-time monitoring system for EAST

The Experimental Advanced Superconducting Tokamak (EAST) Device has been in operation since 2006. The convenient real-time data monitoring and analysis tools are very important for engineering and physicists’ experts to observe the operational status of the device during the experiment. This paper presents a new Java web application that creates a system combining signal real-time monitoring and EAST magnets stability judgment by writing Java Server Pages (JSP) and JavaScript code. The application is composed of three modules: data visualization, data monitoring and offline data analysis. The data visualization and monitoring modules are Java-based open source architecture and Highcharts display module, whose data is obtained from MDSplus. Several new algorithms are embedded in the system to calculate the alternating current (AC) loss of the superconducting poloidal field (PF) coils and evaluate the electromagnetic (EM) loads of the EAST magnets. In these algorithms, the EM loads and AC loss can be obtained by a linear transform of given currents using the pre-computed interaction matrix. The system is successfully applied on EAST experiment.

Implementation of Interactive Classroom Design based on WI-FI Service

In order to realize the teaching interactive classroom in the local area network, the WI-FI router is used to set up the virtual server, and the web service system is established by using the Apache TOMCAT service software. The chat room was designed using Java Server Pages (JSP). Through the chat room, teachers and students can interact. First the WIFI network architecture was introduced, then the interactive classroom chat room design was proposed, finally the experiment was carried out. The results show that the interactive classroom design based on Wi-Fi service can achieve the effect of teaching interaction. The system can save network traffic without accessing the Internet, while increasing classroom interaction.

Analysis of protection capabilities against SQL Injection attacks

Publication refers to SQL Injection attacks whose are one of the most dangerous in a cyberspace. Based on a literature studies, classification of the SQL Injection attacks was prepared. The purpose of the work was to analyse of protections effectiveness against SQL Injection attacks. Research method has been based on author application, which was implemented in JSP (JavaServer Pages) technology using MySQL database server.

A modified fuzzy approach to prioritize project activities

Project management is an important task in business although project is not just confined to business. Due to the uncertainty of the various variables involved in a project, over several past decades research is going on in the search for an efficient project management model. Although numerous crisp models are easily implementable, the potential of fuzzy models are huge. In the case of software development, the variables involved are highly dynamic. In this paper, we propose a ranking based fuzzy model that can prioritize various activities. We use a popular crisp model to test the effectiveness of the fuzzy model proposed. Simulation is done through Java Server Pages (JSP). There is considerable computational and managerial advantage in implementing the fuzzy model.

Comparison of selected graphical web interface libraries used in JEE applications

The basic technology for creating a graphical user interface (GUI) for Java Enterprise Edition web applications is JavaServer Pages (JSP). However, the capabilities offered by JSP are not sufficient, which has resulted in many extensions that assist the programmer in quickly creating modern GUI. The paper presents the results of comparison JavaServer Faces, Rich Faces and Prime Faces libraries.

SISTEM INFORMASI PERPUSTAKAAN E-LIBRARY STMIK ASIA MALANG BERBASIS JAVA SERVER PAGE

The development of library services, especially in University is not be separated from the addition of system-based services online or through the assistance of the Internet network, commonly called the online library. Many ways in which transactions are carried out in order to attract visitors read perpusktakaan and provide ease of library services. Starting from beautify the library website page views, view the catalog online book inventory to enjoy libraries of books no longer have to be physical book but also provide e-book and journal thesis conducted at the college. Libraries in creating a website online is not only quite superior in the layout and design of the website only. But which should also be considered is the level of security of the website. To mengjhasilkan online library website is user friendly and secure from the threat of cyber crime, the researchers in this study memenggunakan Java Server Page as a web server. Keywords: Online Library, User Friendly, Java Server Page

Information management at the North Temperate Lakes Long-term Ecological Research site — Successful support of research in a large, diverse, and long running project

Information management has been an integral part of the research process at the North Temperate Lakes Long-term Ecological Research (NTL LTER) program for over 30years. A combination of factors has made the information management system (IMS) at NTL very successful. Significant resources have been invested in the IMS from the beginning, the Information Manager has been part of the leadership team at NTL and later in various roles at the LTER network level; the NTL IMS was a very early adopter of database systems, standardized metadata, and a data delivery system based on those metadata. This approach has made data easily accessible to NTL researchers and the broader scientific community. Data management workflows have become increasingly more automated with adoption of modern technologies as they became available, making the system efficient enough to handle core data as well as all one-time research data generated within NTL and several related projects. More than three decades of core data from eleven lakes are reused extensively as critical background information and as the limnological go-to site for many synthesis projects within and beyond LTER.The NTL IMS continues to implement new technologies for improving data management efficiency, discovery, access, integration, and synthesis. Accordingly, the functionality of the original online data access system programmed in Java and JavaServer Pages (JSP) was ported to the modern content management system, Drupal and integrated into LTER's Drupal Ecological Information Management System (DEIMS). NTL has invested in sensor technology for studying lake conditions over the long term, which necessitated a sophisticated management system tailored to high frequency data streams. Several technologies have been used at different times for automation of management, quality control and archiving of these high volume data. Near real time lake conditions can be accessed on the NTL website and smart phone Apps.Easy access to long-term and sensor data in the NTL IMS has led NTL researchers to develop new analytical methods and the publication of several R statistical packages. Recent graduate students are now employed as data scientists helping define a new career path inspired by the availability of data.The NTL project has amassed one of the world's most comprehensive long-term datasets on lakes and their surrounding landscapes. The NTL IMS facilitates the use of these data by multiple groups for research, education, and communication of science to the public.

Forward Dynamic Slicing of Web Applications

We present a technique to compute dynamic slices for web applications using forward slicing approach. In our work, we have considered JSP (JavaServer Pages) based web applications. The slicing technique can efficiently be applied using an intermediate representation of a web application. We have proposed a graph called Web Dependence Graph (WDG) as the intermediate representation to correctly represent web applications. We have named our technique Web Application Forward Dynamic Slicing (WAFDS) Algorithm. The WAFDS algorithm first constructs the WDG. Then, the web application is executed for a given input, specified in slicing criteria, and the nodes in WDG resembling the executed statements are marked. Finally, the WDG is traversed in forward direction only along the marked nodes. The traversal is started from the desired point specified in the slicing criterion. The statements corresponding to the traversed marked nodes constitute the required dynamic slice for the given slicing criterion. During traversal along the marked nodes, the dynamic slice at each node is computed. Thus, for a given slicing criterion, the dynamic slice can be obtained in O(1) time.

Virtual credit card processing system

The Institute of Technology Blanchardstown decided in 1999 to teach Java to our computing students from 1st year. Java is now being used to support the practical component of all our subjects. This paper presents a project implemented by two of our third year students as a case study of what students can achieve after 3 years of Java programming. The virtual credit card processing system is an e-business system which provides a secure and universal mechanism for making purchases over the Internet. The system uses Remote Method Invocation(RMI), Java Server Pages(JSP), Java Servlets and Java Database Connectivity(JDBC).

XSS-SAFE: A Server-Side Approach to Detect and Mitigate Cross-Site Scripting (XSS) Attacks in JavaScript Code

Nowadays, Web applications are considered to be one of the most ubiquitous platforms for providing the information and service release over the World Wide Web, particularly those deployed in health care, banking, e-commerce operations, etc. Boom of social networking sites and modern Web applications that transfer dynamic information to the client-side Web browsers has increased the user-generated and feature-rich HTML content on the Internet. This enhanced HTML content includes a malicious attack vector for Web-related attacks. Cross-site scripting (XSS) attacks are presently the most exploited security problems in modern Web applications and activated by an attacker to utilize the vulnerabilities of the poorly written Web application source code. Users across all over the popular social networking Web sites are exposed to XSS attacks. These attacks are generally caused by the malicious scripts, which do not validate the user-injected input appropriately and exploit the vulnerabilities in the source code of the Web applications. It results in the loss of confidential information such as stealing of cookies, theft of passwords, and other private credentials. In this paper, we propose a robust framework known as XSS-SAFE (Cross-Site Scripting Secure Web Application FramEwork), which is a server-side automated framework for the detection and mitigation of XSS attacks. XSS-SAFE is designed based on the idea of injecting the features of JavaScript and introduced an idea of injecting the sanitization routines in the source code of JavaScript to detect and mitigate the malicious injected XSS attack vectors. We repeatedly inject the feature content, generate rules, and insert sanitization routines for the discovery of XSS attacks. We have evaluated our approach on five real-world JavaServer Pages (JSP) programs. The results indicate that XSS-SAFE detects and mitigates most of the previously known and unknown XSS attacks with minimum false positives, zero false-negative rate, and low runtime overhead.

B/S Structure-Based Remote Management System in CNC

A multi-user remote transmission of CNC machining management system was developed based on B/S structure, which combines network management model with CNC machining technologies and replaces the traditional file-copy format. This system not only provides convenience for users to use CNC equipment but also greatly improves efficiency and safety. In this project, a JSP (Java Server Pages) dynamic web site was developed in the MyEclipse environment, which can carry out many functions, including management of users’ information and documents taking advantage of database technology, transmitting and operating NC code and source files which CAD/CAM software generated. This is an attempt of centralized CAD/CAM network manufacturing.

A Mechanism for Detecting Dead URLs in XTM-based Ontology Repository

It is a common knowledge in this current age that the challenge is no more the availability of information but accessing the appropriate information. This challenge is attributed to the fact that information is highly unstructured. An innovative technology called XML Topic Map (XTM) is used to address the challenge. However, the technology is equally associated with an issue known as dead links as a result of lack of maintenance which causes a lot of time wastage thereby making the technology not very effective. Therefore, this paper presents an XTM-based system using News domain as case study to solve the issue of dead links. The system is a three-tier architecture implemented with Java Server Pages (JSP). The study offers a time saving system that would assist user to identify URLs that are dead in XTMbased applications as soon as user access topic. General Terms Ontology, Semantic Web, XTM, RDF, LTM, Ontopia, URLs, Repository

Web based software for the study of USDA soil taxonomy and classification of newly found soil

United States Department of Agriculture (USDA) Soil Taxonomy is based on soil properties that can be objectively observed and measured in the natural conditions as they exist today. There are many soil classification systems but USDA Soil Taxonomy is most accepted worldwide. Ontologies are the new form of knowledge representation that acts in synergy with agents and Semantic Web Architecture. Soil ontology developed for USDA soil taxonomy has been used to develop a query interface that will help in detailed study of soil taxonomy, classification of new soil as well as exchange knowledge between software agents and systems. This is a web based application having N-tier architecture. Application development environment is NetBeans 6.9 editor and Protégé. Web development technology is Java Server Pages (JSP). Programming languages JAVA and SPARQL are used for querying. Client interface is developed with Hyper Text Markup Language (HTML), Cascading Style Sheet (CSS) and JavaScript. Third tier of software consist of database which is in MS-SQL server 2005. Other two layers are Web Ontology Language (OWL) Ontology layer and Semantic Web Framework layer. OWL layer contains soil taxonomy information in the form of Ontology. Semantic Web Framework layer is implemented using JENA. In the search panel user can search anything related to USDA Soil Taxonomy, which comprises of twelve orders. However, this software contains information about seven soil orders reported in India. Domain experts can see and edit the knowledge base (i.e. Soil Ontology) or can suggest anything related to the creation of Soil Taxonomy Ontology through WebProtégé.

A web application system for structural modal identification

The increasing development of algorithms for the assessment of structural modal characteristics stems from continuous improvement in vibration tests and computational processing capabilities. However, the identification process of deformable dynamic systems occasionally demands high computational costs. Nevertheless, with the increasing expansion of high-speed broadband internet, the concept of web application becomes a prevailing alternative. This paper presents the free web application Midas (Modal Identification of Deformable Systems), which is implemented in Java and applied to structural modal identification. This procedure is performed via the internet using data gathered from dynamic measurements. Available technologies and web development tools such as JavaServer Pages and JavaServer Faces are used to implement Midas. For the dynamic treatment of the vibration data, two identification techniques are used – the random decrement method and the Ibrahim time domain method. In order to evaluate the developed web application, two experimental applications are explored.

A Decision Support System for Solving Linear Programming Problems

Linear programming algorithms have been widely used in Decision Support Systems. These systems have incorporated linear programming algorithms for the solution of the given problems. Yet, the special structure of each linear problem may take advantage of different linear programming algorithms or different techniques used in these algorithms. This paper proposes a web-based DSS that assists decision makers in the solution of linear programming problems with a variety of linear programming algorithms and techniques. Two linear programming algorithms have been included in the DSS: (i) revised simplex algorithm and (ii) exterior primal simplex algorithm. Furthermore, ten scaling techniques, five basis update methods and eight pivoting rules have been incorporated in the DSS. All linear programming algorithms and methods have been implemented using MATLAB and converted to Java classes using MATLAB Builder JA, while the web interface of the DSS has been designed using Java Server Pages.

Aplikace Google Datastore a Javaserver stránky standardní knihovny

The term has been used frequently a lot lately. One of the distribution models of cloud computing is Platform as a Service also known as PaaS, where the providers provide complete tools for the support of the whole life cycle of development and providing of applications. One of the providers of PaaS is also Google with its Google App Engine. Applications of the Google App Engine are developed with Java Enterprise Editions technologies like Java Servlets and JavaServer Pages. One of the services offered by the Google App Engine is also Datastore database. Unfortunately, this database is not relational, which makes it impossible to use all the common tools of the Java Enterprise Editions web applications to the access the data. In the JavaServer Pages these tools are mainly tags of JavaServer Pages Standard Tag Library of the SQL type. This article will show you how these tools can be adapted for the use with the Datastore database.

Service Oriented Architecture Based SDI Model for Mineral Resources Management in India

Today’s economic growth rate of any country hugely depends on development of the mining sector. Thus, the level of technology employed for meeting the extraction conditions must meet environmental norms. Exploration of mineral resources in India and mining is a ready application for technologies for ensuring productivity and efficiency. Mineral resources management uses Spatial Data Infrastructure (SDI) in the study reported. SDI is a portal where each stakeholder can access, use and exchange spatial and non-spatial data for social, economic and environmental activities. The proposed system at national level may have its nodes at state level and local level on Intranet and/or Internet on Global level. The present work reports the development of an efficient interoperable Service Oriented Architecture (SOA) based SDI Model for mineral resources management in India (Acronym: MRII (Mineral Resources Information Infrastructure)) to provide better geospatial web services for different applications in terms of their functionality, ease of operation and performance as applied in various mineral resources management systems. The MRII is modular. It allows the publishing of web service descriptions as well as to submit requests to discover the web services of user’s interests. The model supports integration of applications and uses thin-client architecture. Web Map Service (WMS), Web Features Service (WFS) and Web Catalogue Service (CS-W) of Open Geospatial Consortium (OGC) standards have been used for sharing and exchange of geospatial data in MRII. The open source GIS software, used for development of MRII, include Quantum GIS for creation of mineral resources geospatial database, PostGIS for storing of spatial database, MYSQL for storing of security aspects of spatial and non-spatial data; ALOV, GeoServer, GeoNetwork, GeoWebCache and Apache Tomcat for imparting geospatial web capabilities and PHP (Hypertext Preprocessor), JSP (Java Server Pages) and GeoExt (Geo Extension) for dynamic server side scripting. The developed MRII presently provides detailed information about mineral resources in India as a test case and aims to deliver spatial information at affordable cost. The same may be used in future for other countries on expanding the volume of spatial data to include the Globe.