One of the consequences of the globalisation of food markets is the effort enabling the control of food security and its origin. This might be traced by using different chemical composition analyses. However, for Central Europe, there is a lack of knowledge about the original reference values as well as their heterogeneity among the lands and countries. This study focused on characterizing the mineral profiles of apple tree fruits and comparing these profiles among different districts in Central Europe. The fruits of the apple cultivars ‘Gala’ and ‘Golden Delicious’ originated in the Czech Republic and Poland. The mineral and isotopic content of the apple fruit flesh was analysed using ICP-MS. The data were processed using the ANOVA test and compositely analysed using the PCA and LDA models. The results show relatively high variation in element distribution, particularly 87Sr/86Sr, Mn, Zn, Cu, Ca, P, and B, ranging between 20.6 and67.9% for both cultivars on average. However, their high variability within particular districts complicates the resolution of the LDA model. The reasons are linked to the geomorphological and pedological heterogeneity of the analysed districts as well as the particular sensitivity of the set of chosen primers to agronomic practices and tree performance. For this region, only partial separation among districts could be obtained by P, Ca, and Cu content, as well as the isotopic ratio of 10B/11B. However, the resolution of the geographical discrimination needs to be improved by an enhanced set of primers, the use of more precise analytical techniques for the Sr isotopic ratio, or by multiple chemical analyses. Furthermore, the heterogeneity of the analysed districts could be tackled by more detailed analyses at the level of micro-regions.
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