While bone stable isotope signatures of humans foraging in open coastal and fully terrestrial environments have been relatively well documented, the signature of foraging near brackish-water estuaries is less well known. This study examines the Central California isotopic landscape, or isoscape, showing how foods in different ecosystems have distinctive isotopic compositions. We present new bone collagen and apatite stable isotope data from two Late Holocene sites (CA-SOL-11 and CA-SOL-69) near Suisun Marsh, a low salinity brackish water estuary upstream from San Francisco Bay. Faunal remains at the sites include significant numbers of aquatic resources including fish and shellfish, in addition to terrestrial mammals, while paleobotanical remains suggest mainly terrestrial nuts and seeds. Stable isotope data at the population level corroborate this finding and show consumption of significant levels of brackish water nutrients, including both dietary protein and dietary carbohydrates and fats, paired with terrestrial foods. This dietary focus generates a unique brackish-water isotopic signature that is distinct from others in Central California. The documentation of an isoscape with strong regional gradients can be of tremendous help in reconstructing ancient patterns in subsistence, migration, and trade.