Macroalgae can incorporate the isotopic signature (δ15N) of their external environment and be used as ‘bioindicators’ to map and identify between multiple sources of anthropogenic nitrogen. However, evidence suggests that the isotopic signature of their tissues can also be influenced by a range of other factors, which could confound their use as a monitoring tool. Hence, this study aimed to better understand the factors affecting macroalgae isotopic signatures, using Chondrus crispus as a model species. This was achieved by exposing C. crispus to 15N-enriched NO3− and/or NH4+ at varying concentrations, temperatures and incubation times under controlled laboratory conditions. Longer incubation times promoted macroalgae δ15N values closer to that of the external nitrogen source. However, even after 28 days incubation, macroalgae δ15N was still >30‰ lower than the source. This suggests that the δ15N of C. crispus is unlikely to reach isotopic equilibrium with its external environment within a time frame that is feasible for most field studies. However, C. crispus can be used to highlight relative isotopic differences between sources even at very low nitrogen concentrations (< 4 μM). Macroalgae incorporated the isotopic signature of external sources faster at higher nitrogen concentrations. This was fastest for macroalgae exposed to a combination of NH4+ and NO3−, followed by just NH4+, and slowest for NO3−. These results could have implications for bioindicator studies where proportions and concentrations of NO3− and NH4+ vary in time and space. Likewise, future field studies may have to account for temperature in their sampling design if temperatures vary spatially and/or seasonally, as the δ15N of C. crispus more closely resembled that of the external nitrogen source at 7 °C than 14 °C. Overall, this study found that the δ15N of C. crispus was not just a function of the source, as it was also influenced by incubation time, temperature and by the concentration and types of nitrogen present. As C. crispus can tolerate high concentrations of NH4+ and a wide range of temperatures, it could be a suitable bioindicator species for monitoring nitrogen rich effluents in many different environments providing the results are interpreted cautiously.