This study assessed the chemical composition of major elements and stable isotopes (H and O) in precipitation, groundwater, and surface water in São Francisco 1 (SF1) sub-basin (approximately 14,000km2), located at the São Francisco River headwater region, fractured aquifer system region with a complex geologic framework. Both groundwater and surface water exhibited low mineral content, with average electrical conductivity of 147.2±99.4 μS.cm-1 and 65.7±78.7 μS.cm-1, respectively. The ionic abundance (mEq.L-1) followed Ca2+>Na+>Mg2+>K+ for cations and HCO₃->SO₄2->Cl->NO₃->F->PO₄3- for anions, with most samples being calcic and/or magnesian bicarbonates. Chemical composition was primarily influenced by rock-water interactions and wet-season precipitation in surface water. The isotopic composition of precipitation showed a seasonal pattern, with lower values in the wet season (-63.87‰ for δ2H and-9.86‰ for δ18O) and higher values in the dry season (-5.12‰ for δ2H and-2.12‰ for δ18O). Groundwater remained constant (-43.71‰ for δ2H and-6.70‰ for δ18O), while surface water varied seasonally (-44.95‰ for δ2H and-7.07‰ for δ18O in the wet season, and-38.12‰ for δ2H and-6.14‰ for δ18O in the dry season), reflecting wet-season precipitation inputs. Consistent groundwater Evaporation Line (EL) slopes across seasons suggest that the recharge was gradual and slow. The Mann-Whitney test for chemical and isotopes tracers pointed out that surface water-groundwater connectivity was present in both seasons, although enhanced in the wet season. In Lower SF1, identical distributions (p=1) of NO₃-, δ2H and δ18O underscore the stronger connectivity and mixing within this compartment. Groundwater was the primary source of streamflow, contributing from 60% to 85%, and wet-season precipitation was another source of surface water.
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