Publisher Summary This chapter discusses that secondary α-hydrogen isotope effects are useful tools that may aid in ascertaining whether an enzyme-catalyzed reaction or covalent interaction of an inhibitor with an enzyme involves rehybridization of a carbon atom of the ligand at or before the rate-determining step of the reaction. It reviews the catalytic mechanism of thymidylate (dTMP) synthetase, as well as the interaction of 5-fluoro-2'-deoxyuridylate (FdUMP) with this enzyme. A salient feature of this mechanism is that a primary event in catalysis involves addition of a nucleophile of the enzyme to the 6-position of the pyrimidine heterocycle to form transient 5, 6-dihydropyrimidine intermediates, in which the 6-carbon is rehybridized, from sp 2 to sp 3 . FdUMP behaves as a quasi-substrate for this reaction, proceeding through the first two steps of the mechanism. The chapter also reviews that kinetic studies indicate that initial attack of thiolate is probably rate determining in this reaction; if so, it may be concluded that the isotope effect observed here is the true kinetic isotope effect of the reaction rather than a pre-equilibrium isotope effect. However, from available evidence, it is not possible to determine whether rehybridization of the 6-carbon of BrdUMP in the enzymic reaction occurs at or before the rate-determining step of the reaction. Results demonstrate that secondary α- hydrogen isotope effects may be of great utility, in demonstrating the existence of transient 5, 6-dihydropyrimidine intermediates, in both chemical and enzymic reactions of pyrimidine nucleosides and nucleotides.
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