The intentionally introduced Pontogammarus robustoides is the most successful amphipod invader of Lithuanian inland waters and has become established in large lakes. Its impact on littoral invertebrate communities was studied by comparing similar habitats across lakes that harbour or are devoid of the invader. In habitats where P. robustoides is well established and numerous, it significantly reduces species richness and community diversity. Moderate pontogammarid density in habitats that can sustain the native gammarid Gammarus lacustris, however, revealed no negative impact on diversity metrics. Among the lakes studied, the benthic biomass did not differ in invaded and uninvaded habitats. The biomass of indigenous invertebrates (excluding chironomids, which exhibited high lake-specific biomass variation) was lower in the places with well-established P. robustoides. A detrimental impact was observed upon the native isopod Asellus aquaticus and a negative correlation with most of the higher taxa of native invertebrates. In the invaded lake habitats that favour P. robustoides, a change in community structure and a decrease in diversity up to twofold or more are to be expected.