Isometric Particles Research Articles

Biological and Molecular Characterization of the Cucumber Mosaic Virus Infecting Purple Coneflowers in China

Purple coneflower (Echinacea purpurea L.), which is a perennial herbaceous plant belonging to the Asteraceae family, is extensively cultivated because of its medicinal applications. However, in Hohhot, Inner Mongolia, China, purple coneflowers in the field exhibited symptoms such as mottle, mosaic, and crinkle. This study aimed to explore the biological and molecular characteristics of the cucumber mosaic virus (CMV) infecting the purple coneflowers in China. We observed isometric particles approximately 30 nm in diameter in the symptomatic leaf specimens. Infection with the CMV was confirmed via high-throughput sequencing and RT-PCR validation. Mechanical inoculation assays demonstrated that the CMV-SGJ isolate could infect both Nicotiana benthamiana and Nicotiana tabacum. Three viral genomic components were identified: RNA1 with 3321 nucleotides, RNA2 with 3048 nucleotides, and RNA3 with 2209 nucleotides. Phylogenetic analysis revealed that the CMV-SGJ isolate clustered into phylogenetic subgroup IA, exhibiting a nucleotide identity of 92.2–95% with subgroup IA CMV isolates in GenBank. This report is the first documentation of the complete genome of the CMV infecting purple flowers in China.

Hybrid Lithology Identification Method Based on Isometric Feature Mapping Manifold Learning and Particle Swarm Optimization-Optimized LightGBM

Hybrid Lithology Identification Method Based on Isometric Feature Mapping Manifold Learning and Particle Swarm Optimization-Optimized LightGBM

Transfection of entomopathogenic Metarhizium species with a mycovirus confers hypervirulence against two lepidopteran pests

Although most known viruses infecting fungi pathogenic to higher eukaryotes are asymptomatic or reduce the virulence of their host fungi, those that confer hypervirulence to entomopathogenic fungus still need to be explored. Here, we identified and studied a novel mycovirus in Metarhizium flavoviride, isolated from small brown planthopper (Laodelphax striatellus). Based on molecular analysis, we tentatively designated the mycovirus as Metarhizium flavoviride partitivirus 1 (MfPV1), a species in genus Gammapartitivirus, family Partitiviridae. MfPV1 has two double-stranded RNAs as its genome, 1,775 and 1,575 bp in size respectively, encapsidated in isometric particles. When we transfected commercial strains of Metarhizium anisopliae and Metarhizium pingshaense with MfPV1, conidiation was significantly enhanced (t test; P-value < 0. 01), and the significantly higher mortality rates of the larvae of diamondback moth (Plutella xylostella) and fall armyworm (Spodoptera frugiperda), two important lepidopteran pests were found in virus-transfected strains (ANOVA; P-value < 0.05). Transcriptomic analysis showed that transcript levels of pathogenesis-related genes in MfPV1-infected M. anisopliae were obviously altered, suggesting increased production of metarhizium adhesin-like protein, hydrolyzed protein, and destruxin synthetase. Further studies are required to elucidate the mechanism whereby MfPV1 enhances the expression of pathogenesis-related genes and virulence of Metarhizium to lepidopteran pests. This study presents experimental evidence that the transfection of other entomopathogenic fungal species with a mycovirus can confer significant hypervirulence and provides a good example that mycoviruses could be used as a synergistic agent to enhance the biocontrol activity of entomopathogenic fungi.

Genomic and biological characteristics of a novel leafhopper-transmitted marafivirus infecting Triticum aestivum.

Here, we report a novel wheat-infecting marafivirus, tentatively named "Triticum aestivum marafivirus" (TaMRV). The full-length genome sequence of TaMRV comprises 6,437 nucleotides, excluding the poly(A) tail. Pairwise sequence comparisons and phylogenetic analysis revealed that TaMRV may represent a novel species within the genus Marafivirus in the family Tymoviridae. We also observed a mass of isometric particles with a diameter of about 30 nm in ultrathin sections of infected wheat leaf tissue. In addition, the leafhopper Psammotettix alienus was identified as a vector for this virus. This is the first report of the occurrence of a wheat-infecting marafivirus.

The Interaction between Hypovirulence-Associated Chrysoviruses and Their Host Fusarium Species.

Chrysoviruses are isometric virus particles (35-50 nm in diameter) with a genome composed of double-stranded RNAs (dsRNA). These viruses belonged to the Chrysoviridae family, named after the first member isolated from Penicillium chrysogenum. Phylogenetic classification has divided the chrysoviruses into Alphachrysovirus and Betachrysovirus genera. Currently, these chrysoviruses have been found to infect many fungi, including Fusarium species, and cause changes in the phenotype and decline in the pathogenicity of the host. Thus, it is a microbial resource with great biocontrol potential against Fusarium species, causing destructive plant diseases and substantial economic losses. This review provides a comprehensive overview of three chrysovirus isolates (Fusarium graminearum virus 2 (FgV2), Fusarium graminearum virus-ch9 (FgV-ch9), and Fusarium oxysporum f. sp. dianthi mycovirus 1 (FodV1)) reported to decline the pathogenicity of Fusarium hosts. It also summarizes the recent studies on host response regulation, host RNA interference, and chrysovirus transmission. The information provided in the review will be a reference for analyzing the interaction of Fusarium species with chrysovirus and proposing opportunities for research on the biocontrol of Fusarium diseases. Finally, we present reasons for conducting further studies on exploring the interaction between chrysoviruses and Fusarium and improving the accumulation and transmission efficiency of these chrysoviruses.

Natural occurrence of pelargonium flower break virus infecting Pelargonium zonale plants in South America

AbstractIn 2023, virus‐like symptoms were observed in Pelargonium zonale plants in Brazil. Transmission electron microscope analysis revealed the presence of isometric particles measuring ca. 30 nm in diameter in leaf extracts and ultrathin sections of symptomatic field plants. Molecular assays using PFBV‐specific primers and sequencing of amplicons identified the pelargonium flower break virus (PFBV, genus Alphacarmovirus). Mechanically inoculated plants of Chenopodium quinoa and P. zonale exhibited symptoms of chlorotic local lesions and systemic chlorotic spots, respectively. This is the first report of PFBV infecting P. zonale plants in South America (Brazil).

A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses.

From the ascomycete Aspergillus cibarius strain NW-FVA 2590, which was originally isolated from a root, associated with stem collar necrosis of Fraxinus excelsior L., a novel virus was isolated and characterized. Its genome is encoded on three monocistronic dsRNA segments ranging from 3683bp (dsRNA 1) over 3093 (dsRNA 2) to 2902bp (dsRNA 3), which are packed in isometric particles of around 35nm. While the viral RdRp (P1) is encoded on segment 1, protein sequencing showed that two more structural proteins are present which are translated from dsRNA 2 (P2) and dsRNA 3 (P3) and possibly form the viral capsid. Additionally, P2 and P3 may undergo posttranslational modifications since the detected proteins bands deviated from the calculated sizes. Due to its phylogenetic position, the novel virus was grouped in the family of Chrysoviridae and was tentatively denominated as Aspergillus cibarius chrysovirus 1 (AcCV1). Due to its composition, biological properties and phylogenetic position, distant from the genera Alphachrysovirus and Betachrysovirus, we suggest to position AcCV1 in a proposed genus "Gammachrysovirus".

Mycoviruses: Antagonistic Potential, Fungal Pathogenesis, and Their Interaction with Rhizoctonia solani.

Mycoviruses, or fungal viruses, are prevalent in all significant fungal kingdoms and genera. These low-virulence viruses can be used as biocontrol agents to manage fungal diseases. These viruses are divided into 19 officially recognized families and 1 unclassified genus. Mycoviruses alter sexual reproduction, pigmentation, and development. Spores and fungal hypha spread mycoviruses. Isometric particles mostly encapsulate dsRNA mycoviruses. The widespread plant-pathogenic fungus Rhizoctonia solani, which has caused a rice sheath blight, has hosted many viruses with different morphologies. It causes significant crop diseases that adversely affect agriculture and the economy. Rice sheath blight threatens the 40% of the global population that relies on rice for food and nutrition. This article reviews mycovirology research on Rhizoctonia solani to demonstrate scientific advances. Mycoviruses control rice sheath blight. Hypovirulence-associated mycoviruses are needed to control R. solani since no cultivars are resistant. Mycoviruses are usually cryptic, but they can benefit the host fungus. Phytopathologists may use hypovirulent viruses as biological control agents. New tools are being developed based on host genome studies to overcome the intellectual challenge of comprehending the interactions between viruses and fungi and the practical challenge of influencing these interactions to develop biocontrol agents against significant plant pathogens.

Mycoviruses in the Rust Fungus Uromyces fabae.

Uromyces fabae, the causal agent of broad bean rust, is a major cause of yield losses in North and East Africa, China, and Australia. It has also served as an important model species for research on rust fungi. Early EST sequencing in U. fabae showed that viruses might be present in this species; however, no follow-up investigations were conducted. In order to identify these viruses, we performed purification of dsRNA followed by Illumina sequencing. We also used ultracentrifugation followed by negative staining electron microscopy to visualize virus particles. We identified 20 viral sequences, which we termed Ufvss. A phylogenetic analysis was performed that grouped Ufvss into totiviruses, polymycoviruses, and virgaviruse; three sequences could not be included in the phylogeny. We also found isometric particles. Our findings contribute to the knowledge of mycoviral diversity in rust fungi and point to the importance of further investigation of these viruses.

Identification of a Cucumber Mosaic Virus from Cucurbita pepo on New Reclamation Land in Egypt and the Changes Induced in Pumpkin Plants

In 2020, the leaves and fruit of 50 pumpkin plants with suspected cucumber mosaic virus (CMV) symptoms of leaf mosaic, vein yellowing, and mild leaf curling were collected from Sharq El-Owainat (Al Wadi El-Gaded governorate), a new reclamation land in Egypt. This study was aimed at deciphering and characterizing the causal agent of the leaf yellowing disease associated with pumpkin plants in Egypt. The causal agent was identified by serological, cytological, and molecular means. The serological identification by DAS–ELISA confirmed the presence of CMV in 20% of the plants. The cytological identification by electron microscopy revealed typical cucumovirus isometric particles of 28–30 nm diameter in the cytoplasm of the leaf parenchyma, epidermal cells, the integument, and the nucleus. Molecular characterization by one-step reverse transcriptase-PCR yielded the required size of amplicon (678 bp) for CMV. Additionally, mechanical sap inoculation was used to determine the host range and symptomatology of the isolated CMV in seventeen different plant species belonging to six different plant families. CMV replicated, moved systemically, and induced a range of symptoms in sixteen plant species. The isolated CMV was transmitted to pumpkin plants at a 16.4% rate by seeds. CMV-infected pumpkin plant leaves were characterized by a substantially low concentration of photosynthetic pigments, a high level of reducing sugars, relatively low protein levels, and a significant increase in total phenol contents, implying their potential role as antiviral agents. Ultrathin sections of infected cells revealed histological changes and cytological abnormalities in comparison to healthy plants. This is the first identification of CMV on new reclamation land in Egypt, pinpointing its swift spread, which could pose a major constraint to pumpkin production in Egypt.

Natural occurrence of cucumber mosaic virus infecting Physalis peruviana plants in Brazil

In 2020, virus-like symptoms such as leaf size reduction, mosaic, and blistering were observed in Physalis peruviana plants in Brazil. Isometric particles ca. 30 nm in diameter were observed by transmission electron microscope in leaf extracts of field-symptomatic plants. Based on molecular assays and nucleotide sequencing of amplicons, cucumber mosaic virus (CMV, genus Cucumovirus) was identified in mixed infection with physalis rugose mosaic virus (PhyRMV, genus Sobemovirus). Phylogenetic analysis indicated that the CMV belongs to the subgroup IA. Symptoms like those of field symptomatic plants were observed on mechanically inoculated plants of P. peruviana. RT-PCR confirmed CMV and PhyRMV infection. CMV was transmitted by Aphis gossypii to P. peruviana plants. This is the first report of CMV infecting P. peruviana plants in Brazil.

Size-controlled liquid phase synthesis of colloidally stable Co3O4 nanoparticles.

Spinel cobalt(ii,iii) oxide (Co3O4) represents a p-type semiconductor exhibiting promising functional properties in view of applications in a broad range of technological fields including magnetic materials and gas sensors as well as sustainable energy conversion systems based on photo- and electrocatalytic water splitting. Due to their high specific surface area, nanoparticle-based structures appear particularly promising for such applications. However, precise control over the diameter and the particle size distribution is required to achieve reproducible size-dependent properties. We herein introduce a synthetic strategy based on the decomposition of hydroxide precursors for the size-controlled preparation of purified Co3O4 nanoparticles with narrow size distributions adjustable in the range between 3-13 nm. The particles exhibit excellent colloidal stability. Their dispersibility in diverse organic solvents further facilitates processing (i.e. ligand exchange) and opens exciting perspectives for controlled self-assembly of the largely isometric primary particles into mesoscale structures. In view of potential applications, functional properties including absorption characteristics and electrocatalytic activity were probed by UV-Vis spectroscopy and cyclic voltammetry, respectively. In these experiments, low amounts of dispersed Co3O4 particles demonstrate strong light absorbance across the entire visible range and immobilized nanoparticles exhibit a comparably low overpotential towards the oxygen evolution reaction in electrocatalytic water splitting.

Study of the distribution morphology of alumina nanofibers in polyester resins

In this paper, the morphology of nanocomposite polyester resins has been studied. The basis was polyester resin NH6586 produced by Kinte. Aluminum oxide nanofibers were introduced into the resin, which are single crystals or chains of single crystals with the γ- Al2O3 structure with a diameter of 5 to 15 nm and up to 1 mm in length. The additive was introduced into the resin by the industry standard twin screw extrusion method. At the same time, the influence on the uniformity of distribution of the addition of mineral filler - submicron particles of titanium dioxide - was studied. It has been shown that conventional methods of mixing the additive do not allow the nanofibers to be completely distributed. In such cases, they are distributed in the form of microbundles. The addition of mineralfiller to the polyester resin improves the distribution of the alumina nanofibers so that no bundle inclusions are observed in the resin cleavage. Thus, it can be concluded that mineral additives of isometric particles are an effective homogenizer of aluminum oxide nanofibers in polymeric materials.

Genome Analysis and Pathobiology of Cassava-Infecting Torradoviruses Containing a Putative Maf/HAM1 Pyrophosphatase Domain.

Next generation sequencing has been used to identify and characterize the full genome sequence of a cassava-infecting torradovirus, revealing the presence of a Maf/HAM1 domain downstream of the RNA-dependent RNA-polymerase (RdRp) domain in RNA1 in all isolates sequenced. A similar domain is also found in unrelated potyvirids infecting Euphorbiaceae hosts in the Americas and cassava in Africa. Even though cassava torrado-like virus (CsTLV) could not be mechanically transmitted to a series of herbaceous hosts, it can be efficiently transmitted by bud graft-inoculation to different cassava landraces. Our bioassays show that CsTLV has a narrow host range. Crystal-like structures of isometric virus-like particles were observed in cells of plants with single infection by CsTLV, and consistently induced chlorotic leaf spots and affected root yields significantly. Moreover, CsTLV infection induces changes in the accumulation of total sugars in storage roots. Field surveys indicated the presence of CsTLV in the main cassava growing regions of Colombia, and the occurrence of two different cassava-infecting torradovirus species. Profiles of small RNAs of 21 to 24 nucleotides in length, derived from CsTLV RNAs targeted by cassava RNA silencing defense mechanisms, are also reported.

Characterization of Solenopsis invicta virus 4, a polycipivirus infecting the red imported fire ant Solenopsis invicta.

Solenopsis invicta virus 4 (SINV-4), a new polycipivirus, was characterized in the host in which it was discovered, Solenopsis invicta. SINV-4 was detected in the worker and larval stages of S. invicta, but not in pupae, male or female alates, or queens. The SINV-4 titer was highest in worker ants, with a mean of 1.14 × 107 ± 5.84 ×107 SINV-4 genome equivalents/ng RNA. Electron microscopic examination of negatively stained samples from particles purified from SINV-4-infected fire ant workers revealed isometric particles with a mean diameter of 47.3 ± 1.4 nm. The mean inter-colony SINV-4 infection rate among S. invicta worker ants was 45.8 ± 38.6 in Alachua County, Florida. In S. invicta collected in Argentina, SINV-4 was detected in 22% of 54 colonies surveyed from across the Formosa region. There did not appear to be any seasonality associated with the SINV-4 infection rate among S. invicta nests. SINV-4 was successfully transmitted to uninfected S. invicta colonies by feeding. Among three colonies of S. invicta inoculated with SINV-4, two retained the infection for up to 72 days. The replicative genome strand of SINV-4 was detected in 18% (n = 11) of SINV-4-infected S. invicta colonies. Among 33 ant species examined, the plus genome strand of SINV-4 was detected in undetermined species of Dorymyrmex and Pheidole, Cyphomyrmex rimosus, Monomorium pharaonis, Pheidole obscurithorax, Solenopsis geminata, Solenopsis richteri, Solenopsis xyloni, and Solenopsis invicta. However, the replicative (minus) genome strand was only detected in S. invicta. SINV-4 infection did not impact brood production or queen fecundity in S. invicta. The mean brood rating (63.3% ± 8.8) after 31 days for SINV-4-infected colonies was not statistically different from that of uninfected colonies (48.3 ± 25.5). At the end of the 31-day test period, mean egg production was not significantly different between SINV-4-infected S. invicta colonies (287.7 ± 45.2 eggs laid/24 hours) and uninfected control colonies (193.0 ± 43.6 eggs laid/24 hours).

Hindered Settling of Fiber Particles in Viscous Fluids

In the current literature, information can mainly be found about free and hindered settling of isometric particles in Newtonian and non-Newtonian fluids. These conclusions cannot be used to describe the sedimentation of non-isometric particle in non-Newtonian fluids. For this reason, we have carried out systematic experiments and calculated the correlation of the hindered settling velocity of a cloud of non-isometric particles in high-viscosity and pseudoplastic liquid. The experiments were performed in transparent model fluids, namely, glycerine (a Newtonian fluid) and an aqueous solution of carboxylmethylcelulose CMC (a non-Newtonian pseudo-plastic liquid). These fluids have similar rheological properties, for example, the fresh fine-grained cementitious composites HPC/UHPC. The experiments were carried out with steel fibers with a ratio of d/l = 0.3/20. The settling velocity was determined for fiber volumes from 1% to 5%. While it is known from previous studies that for spherical particles the hindered settling velocity is proportional to the porosity of a suspension cloud on exponent 4.8, which was confirmed by our verification experiment, for the studied fiber particles it is proportional to the porosity on exponent 22.1. This great increase in the exponent is an effect of both the shape of the particles and, in particular, a mutual influence that arises from their interweaving and connection in the suspension.

Chemical-mechanical treatment of potato starch for isolation of nanocrystal particles

Starch nanocrystals were isolated by a combination of acid hydrolysis and sonication of native potato starch. The obtained samples were examined by XRD, scanning electron microscopy and static light scattering. An increase in hydrolysis time increases the degree of crystallinity from 47 to 66%. By changing the processing conditions, it is possible to isolate particles of a given size. First, submicron flat particles with dimensions of 3000–5000 nm and a thickness of 80–100 nm are obtained. With longer processing, approximately isometric nanoscale particles remain. Based on the obtained data, a stepwise topochemical mechanism for the formation of starch nanoparticles was proposed.

Preponderance of mixed infection of Cucumber mosaic virus and Candidatus Phytoplasma australasia on brinjal in India

Cucumber mosaic virus (CMV) has broad host range by infecting major stable food crops and causes heavy loss especially in brinjal. In major brinjal growing tracts of Tamil Nadu, Krishnagiri recorded the highest combined infection of CMV and Candidatus Phytoplasma australasia (Ca. P. australasia) with 26%. The symptoms ranged from mild to severe mosaic, mottling, filiformity of leaves and little leaf. The virus was successfully transmitted to cowpea cv. CO7 and ridge gourd through mechanical inoculation and the presence of virus was detected both by DAC-ELISA and RT-PCR. Electron microscopy of CMV exemplified isometric particles with 28–35 nm under TEM and phytoplasma with 700–820 nm in SEM analysis. Among the different test hosts, Luffa acutangula was found to be the best indicator host for brinjal CMV isolate as it requires shorter period (4-5DPI) to express symptoms with good virus titer (A405nm 2.318). The genome characterization of CMV TNB isolate revealed that the RNA1, RNA2 and RNA3 have 97, 96 and 99% homology with other 1B sub group CMV isolates, respectively. Recombination analysis of RNA2 of CMV TNB has tomato Egyptian isolate (KT921315) as major parent and black pepper Indian isolate (KU947030) as minor parent at the conserved region (52-805nt). The characterization of phytoplasma using iphy classifier reveled Ca. P. australasia belonging to 16SrIID subgroup was present along with CMV infection. In addition, the Solanum torvum grown in and around brinjal ecosystem showed severe mosaic and exhibited 99% nucleotide identity with CMV TNB isolate and these plants also act as inoculum source during the on and off cropping season in India. To our knowledge this is the first record of mixed infection of CMV and Ca. P. australasia in brinjal and first record of CMV infection in S. torvum in India.

Electric Fields Enhance Ice Formation from Water Vapor by Decreasing the Nucleation Energy Barrier

Video images of ice formation from moist air under temperature and electric potential gradients reveal that ambient electricity enhances ice production rates while changing the habit of ice particles formed under low supersaturation. The crystals formed under an electric field are needles and dendrites instead of the isometric ice particles obtained within a Faraday cage. Both a non-classical mechanism and classical nucleation theory independently explain the observed mutual feedback between ice formation and its electrification. The elongated shapes result from electrostatic repulsion at the crystal surfaces, opposing the attractive intermolecular forces and thus lowering the ice-air interfacial tension. The video images allow for the estimation of ice particle dimensions, weight, and speed within the electric field. Feeding this data on standard equations from electrostatics shows that the ice surface charge density attains 0.62–1.25 × 10−6 C·m−2, corresponding to 73–147 kV·m−1 potential gradients, reaching the range measured within thunderstorms. The present findings contribute to a better understanding of natural and industrial processes involving water phase change by acknowledging the presence and effects of the pervasive electric fields in the ambient environment.

Effect of Y2O3 additive on morphology and phase composition of zirconia solid solutions

Zirconia and zirconia-yttria solid solution powders within the range of 0–8 mol.% Y2O3 concentration were precipitated and crystallized in NaOH aqueous solution under hydrothermal conditions. The resulting powders were characterized using X-ray diffraction, specific surface area measurements and infrared and Raman spectroscopy. It has been found that morphology and phase composition of the obtained powders are strongly influenced by the Y2O3 concentration in the system. Low yttria content of 0 and 1 mol. % leads to the elongated particles with monoclinic symmetry. Moreover, an order of magnitude smaller isometric particles appear when Y2O3 content reaches 2 mol.% and more. They are characterized by tetragonal or even cubic symmetry. It has been shown that Y2O3 forms solid solution in each zirconia polymorph, i.e. monoclinic, tetragonal and cubic symmetry one.