A nonlinear numerical model for the two-fluid (electron and ion fluid) description of the evolution of a plasma in toroidal geometry, MH3D-T, is described. The model extends the “drift” ordering for small perturbations to arbitrary perturbation size. It is similar, but not identical, to the collisional Braginskii equations. The ion gyroviscous stress tensor, Hall terms, temperature diamagnetic drifts, and a separate electron pressure evolution are included. The model stresses the (fluid) parallel dynamics by solving the density evolution together with the temperature equations, including the thermal equilibration along the magnetic field. It includes the neoclassical, collisional parallel viscous forces for electrons and ions. The model has been benchmarked against the stabilizing effects of the ion diamagnetic drift ω*i on the m=1, n=1 reconnecting mode in a cylinder. The stabilization mechanism is shown to be poloidal rotation of the global kink flow of the plasma mass vi within q<1, relative to the location of the magnetic field X-point within the reconnection layer. The ion ω*i-drift is also shown to cause frequency-splitting for the toroidal Alfvén eigenmode (TAE). Basic diamagnetic and neoclassical magnetohydrodynamic (MHD) effects on magnetic island evolution and rotation are discussed. The dynamics of the plasma along the magnetic field, when compressibility, parallel thermal conductivity, plasma density evolution, and full toroidal geometry are kept, are found to have strong effects on both linear growth rates and nonlinear evolution. The nonlinear coupling of magnetic islands, driven by perturbations of different toroidal mode number, is enhanced by the density evolution in both MHD and two-fluids.
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