The femtosecond laser direct writing of metals has gained significant attention for micro/nanostructuring. Copper (I) oxide nanospheres (NSs), a promising material for multi-photon metallization, can be reduced to copper (Cu) and sintered through near-infrared femtosecond laser pulse irradiation. In this study, we investigated the size effect of copper (I) oxide nanospheres on their morphology when coated on Cu thin films and irradiated by near-infrared femtosecond laser pulses. Three Cu2O NS inks were prepared, consisting of small (φ100 nm), large (φ200 nm), and a mixture of φ100 nm and φ200 nm NSs. A unique phenomenon was observed at low laser pulse energy: both sizes of NSs bonded as single layers when the mixed NSs were used. At higher pulse energies, the small NSs melted readily compared to the large NSs. In comparisons between the large and mixed NSs, some large NSs remained intact, suggesting that the morphology of the NSs can be controlled by varying the concentration of different-sized NSs. Considering the simulation results indicating that the electromagnetic fields between large and small NSs are nearly identical, this differential morphology is likely attributed to the differences in the heat capacity of the NSs.