The composition of the berberine wastewater is complicated with high concentration of chemical oxygen demand (COD). Because it is hard to be degraded by traditional biochemical treatment and causes serious environmental pollution. The applicability of internal electrolysis to improve the biodegradability of berberine wastewater to be treated biologically was investigated. The wastewater was originated from a factory producing berberine. Treatability studies were conducted under laboratory conditions in order to determine the operational conditions to enhance the biodegradation of the wastewater.The major operational conditions, such as the initial pH, the second stage pH, the volume ratio of iron-carbon microelectrolysis filler to waste water and aeration time were investigated in the paper. The result of the experiment shows that the initial pH 2.0-2.5, second stage pH 9, the best volume ratio of iron-carbon micro-electrolysis packing and wastewater is 1:1 and the the residence time control in 120 minutes are the best operating parameters on the berberine wastewater treatment.