The Lokoundje alluvial clay deposits are located at the left floodplain of the Lokoundje River, towards the estuary in the Kribi region. The mineralogical and geochemical features of the Lokoundje River fine-grained sediments have been reported using XRD, XRF, ICP-MS, and IR instruments in order to understand their provenance and depositional history. The Lokoundje watershed covers a surface area of about 5381 km2. The basement of this watershed is made up of gneisses, amphibolites, migmatites, charnockites, and pyroxenites from the Nyong and Ntem units, in the NW border of the Congo craton. The alluvial materials are about 100 cm thick and cover a total area of 1.4 km2. They are mainly plastic clays with silty-clayey texture and four colors (yellow, red yellow, white, and light grey). The mineral assemblage is composed of kaolinite, quartz, illite, gibbsite, goethite, rutile, and interstratified illite-vermiculite. The infra-red data associated with those of XRD portray the disordering of kaolinite. These materials are mostly constituted by SiO2 (44.33–69.19 wt%, av. = 51.17 wt% with n = 18) and Al2O3 (20.69–30.26 wt%, av. = 26.07 wt%) with very low Fe2O3 contents (1–7.71 wt%, av. = 3.35 wt%). The SiO2/Al2O3 ratio range between 1.46 and 4.1 (av. = 2.06). The alkali contents (Na2O + K2O) are below 5 wt%. ICV, CIA, PIA, and SiO2/Al2O3 portray high degree of chemical weathering in the source area as well as the maturity of sediments. The trace element behavior is quite different probably due to the mixed source rocks; Ba, Sr, Zn have high contents while several elements such as Th and U show low contents. The REE contents are also variable; their concentrations vary between 92 and 1065 ppm (av. = 307 ppm). The mineral assemblage associated with the geochemical data reveal that REE are mainly housed in clay minerals. The behavior of REE is also marked by the abundance of LREE (LREE/HREE = 19.69–34.62). The REE chondrite-normalized spectra confirm the LREE-abundance and exhibit negative Eu anomalies. The PAAS-normalized patterns reveal slight positive Eu anomalies and negative Ce anomalies. The (La/Yb)N values (3.30–8.43, av. = 5.71) display low degree of REE-fractionation in the Lokoundje watershed. The morphological, mineralogical, and geochemical features reveal that the fine-grained sediments derive from the intense weathering of mixed source. The disordering of kaolinite confirms that sediments were sorted during a long transportation before their deposition under oxic conditions (U/Th < 1.25; V/Cr < 2) in the floodplains near the Atlantic coast.