Ionization Potential Research Articles

Relating Bond Orders and Bond Energies to Ionization Energies and Electron Affinities: A Quantitative Approach

Relating Bond Orders and Bond Energies to Ionization Energies and Electron Affinities: A Quantitative Approach

Correlation Between Ionization and Hydration Energies

Correlation Between Ionization and Hydration Energies

Calculations of Positron Scattering from Boron, BH, BF, BF2, and BF3

The single-center convergent close-coupling (CCC) method is applied to calculate positron scattering from boron. A model potential approach is utilized to extract the positronium formation, direct ionization, and values between the positronium formation and ionization thresholds. We present results for total, electron loss, elastic, momentum transfer, total bound state excitation, positronium formation, direct ionization, stopping power, and mean excitation energy from 10−5 eV to 5000 eV. For boron, there is only one other set of theoretical positron calculations for elastic and momentum transfer above 500 eV, which is in excellent agreement with the current CCC results. Using the current results for boron atoms and previous CCC calculations for hydrogen and fluorine atoms, positron scattering from BF, BF2, BF3, and BH molecules is calculated for energies between 0.1 eV and 5000 eV with a modified independent atom approach.

What tunes guanine ionization potential in a nucleosome? An all-in-one systematic QM/MM assessment

Guanine radical cations are precursors to oxidatively induced DNA lesions, and the determination of oxidative DNA hot spots beyond oligonucleotides remains a current challenge. In order to rationalize the finetuned ionization properties of the ∼60 guanines in a nucleosome core particle, we report a robust molecular dynamics-then-FO-DFTB/MM (fragment-orbital tight-binding density functional theory/molecular mechanics) simulation protocol spanning 20 μs. Our work allows us to identify several factors governing guanine ionization potential and map oxidative hotspots. Our results highlight the predominant role of the proximity of positively charged histone residues in the modulation of the guanine ionization potential up to 0.6 eV. Consequently, fast, long-range hole transfer in nucleosomal DNA could be tuned by the proximity of histone tails, which differs, from a biological point of view, on the chromatin state.

Toward Consistent Predictions of Core/Valence Ionization Potentials and Valence Excitation Energies by MRSF-TDDFT.

Optimizing exchange-correlation functionals for both core/valence ionization potentials (cIPs/vIPs) and valence excitation energies (VEEs) at the same time in the framework of MRSF-TDDFT is self-contradictory. To overcome the challenge, within the previous "adaptive exact exchange" or double-tuning strategy on Coulomb-attenuating XC functionals (CAM), a new XC functional specifically for cIPs and vIPs was first developed by enhancing exact exchange to both short- and long-range regions. The resulting DTCAM-XI functional achieved remarkably high accuracy in its predictions with errors of less than half eV. An additional concept of "valence attenuation", where the amount of exact exchange for the frontier orbital regions is selectively suppressed, was introduced to consistently predict both VEEs and IPs at the same time. The second functional, DTCAM-XIV, exhibits consistent overall prediction accuracy at ∼0.64 eV. By preferentially optimizing VEEs within the same "valence attenuation" concept, a third functional, DTCAM-VAEE, was obtained, which exhibits improved performance as compared to that of the previous DTCAM-VEE and DTCAM-AEE in the prediction of VEEs, making it an attractive alternative to BH&HLYP. As the combination of "adaptive exchange" and "valence attenuation" is operative, it would be exciting to explore its potential with a more tunable framework in the future.

In silico Investigation on the Structural Insights into the Binding of Squalamine Inhibitor with Membrane-Bound Α-Synuclein

Background: Parkinson's disease (PD) and its associated symptoms are closely associated with the self-assembly of α-Synuclein (α-Syn). Squalamine is a naturally occurring chemical substance with established antiviral and anticancer properties, and its profound impact on the α- Syn aggregation both in vivo and in vitro is well studied. Examining its interaction with lipid vesicles, which are known to encourage nucleation, can signify the mechanism of action of squalamine. The squalamine molecule is believed to displace α-Syn from the surfaces of the lipid vesicles, therefore preventing the initial steps in the process of aggregation. Additionally, the squalamine molecule reduces the harmful effects of α-Syn oligomers in human neuroblastoma cells by preventing them from interacting with lipid membranes. Objective: The aim of this study was to perform computational investigation of the conformational changes of membrane-bound α-Syn in the presence of squalamine inhibitor molecule objective: Computational investigation of the conformational changes of membrane-bound α-Synuclein in the presence of squalamine inhibitor molecule Method: Molecular Dynamics (MD) trajectory analysis was carried out to study the structural change of the α-Syn-squalamine conformers as a function of simulation time. The percentage of the secondary structural components of the α-Syn-squalamine complex was determined. Optimization of small molecule inhibitors was carried out using Density Functional Theory (DFT) analysis. Additionally, the values of electrophilicity (ω), nucleophilicity (N), Electron affinity (EA), and ionization potential (IP) were calculated. Results: The docking of the α-Syn-squalamine complex revealed the binding site and the best structure was selected based on the highest docking vina score (-5.8), and the contact residues were listed. From the conformational snapshots of the α-Syn-squalamine complex, it was evident that the α-Syn remained stable, maintaining its integrity throughout the simulation. The α-helical content was found to be retained from the secondary structural content analysis. The ω and N of the squalamine molecule were calculated to be -0.84 and 3.25, respectively. Conclusion: Our findings suggest that in the presence of a squalamine inhibitor molecule, α-Syn adopts a helical conformation that ensures stability and may indicate that the squalamine molecule causes gradual displacement of α-Syn across different regions within the lipid membrane.

Study the structure, stability and CO2 adsorption of the ScVB5 cluster

A combination of genetic algorithm and density functional theory (GA-DFT) was used to calculate the minimum structures of ScVB5 clusters. The thirteen isomers of ScVB5 cluster were investigated at the level of PBE/def2-TZVPP, TPSSh/def2-TZVPP, and TPSSh/def2-QZVP levels. The relative energies, the structural geometry, ionization energy, affinity energy of neutral isomers were reported. The ScVB5 cluster can be formed by adding atom into smaller clusters. The proposed structure of ScVB5 cluster for CO2 treatment is a pentagonal bipyramid in the Cs symmetry with vanadium atom at one of the vertices and scandium atom in the base of bipyramid. The favor position for adsorp CO2 by the ScVB5 cluster were at around of Sc and V atoms. The dual transition metal-doped boron clusters can interact with CO2 molecules stronger than pure boron clusters.

Computer-aided drug design supporting sunscreen research: a showcase study using previously synthesized hybrid UV filter-antioxidant compounds.

Although quantum mechanical calculations have proven effective in accurately predicting UV absorption and assessing the antioxidant potential of compounds, the utilization of computer-aided drug design (CADD) to support sustainable synthesis research of new sunscreen active ingredients remains an area with limited exploration. Furthermore, there are ongoing concerns about the safety and effectiveness of existing sunscreens. Therefore, it remains crucial to investigate photoprotection mechanisms and develop enhanced strategies for mitigating the harmful effects of UVR exposure, improving both the safety and efficacy of sunscreen products. A previous study conducted synthesis research on eight novel hybrid compounds (I-VIII) for use in sunscreen products by molecular hybridization of trans-resveratrol (RESV), avobenzone (AVO), and octinoxate (OMC). Herein, time-dependent density functional theory (TD-DFT) calculations performed in the gas phase on the isolated hybrid compounds (I-VIII) proved to reproduce the experimental UV absorption. Resveratrol-avobenzone structure-based hybrids (I-IV) present absorption maxima in the UVB range with slight differences between them, while resveratrol-OMC structure-based hybrids (V-VIII) showed main absorption in the UVA range. Among RESV-OMC hybrids, compounds V and VI exhibited higher UV absorption intensity, and compound VIII stood out for its broad-spectrum coverage in our simulations. Furthermore, both in silico and in vitro analyses revealed that compounds VII and VIII exhibited the highest antioxidant activity, with compound I emerging as the most reactive antioxidant within RESV-AVO hybrids. The study suggests a preference for the hydrogen atom transfer (HAT) mechanism over single-electron transfer followed by proton transfer (SET-PT) in the gas phase. With a strong focus on sustainability, this approach reduces costs and minimizes effluent production in synthesis research, promoting the eco-friendly development of new sunscreen active ingredients. The SPARTAN'20 program was utilized for the geometry optimization and energy calculations of all compounds. Conformer distribution analysis was performed using the Merck molecular force field 94 (MMFF94), and geometry optimization was carried out using the parametric method 6 (PM6) followed by density functional theory (DFT/B3LYP/6-31G(d)). The antioxidant behavior of the hybrid compounds (I-VIII) was determined using the highest occupied molecular orbital (εHOMO) and the lowest unoccupied molecular orbital (εLUMO) energies, as well as the bond dissociation enthalpy (BDE), ionization potential (IP), and proton dissociation enthalpy (PDE) values, all calculated at the same level of structural optimization. TD-DFT study is carried out to calculate the excitation energy using the B3LYP functional with the 6-31G(d) basis set. The calculated transitions were convoluted with a Gaussian profile using the Gabedit program.

Control of Photoinduced Charge Transfer Through Selective Cyanation of Spirofluorene‐Bridged N‐Heterotriangulenes

AbstractA series of selectively cyanated spirofluorene‐bridged N‐heterotriangulenes (N‐HTAs) with three to nine cyano groups are synthesized via a newly developed synthetic strategy. X‐ray crystallographic analysis of the compounds revealed a tripod‐like molecular shape with the fluorenyl moieties arranged in a perpendicular fashion around the nitrogen‐centered N‐HTA core. The solid state packing is found to be strongly influenced by the dipolar cyano functions. Under electrochemical conditions, the N‐HTA core is prone to undergo a reversible one‐electron oxidation toward the nitrogen‐centered radical cation, which becomes increasingly difficult as the number of the cyano acceptors, and consequently the ionization potential, increases. While a clear bathochromic shift is observed in the steady‐state UV–vis absorption spectra, the fluorescence behavior is complex and strongly dependent on the position and number of the cyano groups. The compound with six cyano functions at the fluorenyl flanks is unique within the series and shows a broad emission maximum at 499 nm and an unusually large Stokes shift of 10 171 cm−1. Time‐resolved absorption and fluorescence measurements, supported by quantum chemical calculations, identified this spectroscopic signature to originate from fast and robust photoinduced intramolecular charge transfer.

Deciphering the interactions between altertoxins and glutenin based on molecular dynamic simulation: inspiration from detection.

Mycotoxin contamination of food has been gaining increasing attention. Hidden mycotoxins that interact with biological macromolecules in food could make the detection of mycotoxins less accurate, potentially leading to the underestimation of the total exposure risk. Interactions of the mycotoxins alternariol (AOH) and alternariol monomethyl ether (AME) with high-molecular glutenin were explored in this study. The recovery rates of AOH and AME (1, 2, and 10 μg kg-1) in three types of grains (rice, corn, and wheat) were relatively low. Molecular dynamics (MD) simulations indicated that AOH and AME bound to glutenin spontaneously. Hydrogen bonds and π-π stacking were the primary interaction forces at the binding sites. Alternariol with one additional hydroxyl group exhibited stronger binding affinity to glutenin than AME when analyzing average local ionization energy. The average interaction energy between AOH and glutenin was -80.68 KJ mol-1, whereas that of AME was -67.11 KJ mol-1. This study revealed the mechanisms of the interactions between AOH (or AME) and high-molecular glutenin using MD and molecular docking. This could be useful in the development of effective methods to detect pollution levels. These results could also play an important role in the evaluation of the toxicological properties of bound altertoxins. © 2024 Society of Chemical Industry.

Exploring the nonlinear optical characteristics of supersalt-decorated graphyne via DFT analysis: unveiling quantum insights into light-matter interaction

In this comprehensive study, we explore into the nonlinear optical (NLO) properties of graphyne (GRY) and its compounds decorated with a super salt (OLi3BeF3), namely GRY@SS1, and GRY@SS2) using the rB3LYP/6−31G(d,p) DFT method. Our findings reveal a substantial enhancement in the electron transfer properties of decorated compounds compared to the pristine GRY surface. This enhancement is evidence by the reduction in the bandgap energies (Eg) from 3.52 eV to 1.68 eV and remarkable boost in maximum absorption ( λmax) from 372.66 to 807.73 nm. Noteably, GRY@SS2 exhibits a significant increase in linear polarizability ( α0 ) (538.18 au), first hyperpolarizability ( β0 ) (3872.76 au), and second hyperpolarizability ( γ0 ) (1.00 × 106) due to reduced excitations energies compared to the GRY ( α0 = 448.61, β0 = 0.14 and γ0 = 5.97 × 105 au). NBO charges show that electrons are transferring from the dopant (supersalt) to the GRY sheet. Furthermore, Non-covalent interactions (NCl), iso-surface, infrared (IR), 1H NMR, and 13C NMR studies have been conducted to provide insights into the nature of interactions, vibrational frequencies, and structural-functional aspects of GRY and GRY@SS1, and GRY@SS2. According to TD-DFT calculations, all compounds demonstrate superior vertical ionization potential, UV–vis absorbance, HOMO–LUMO characteristics, as well as interaction energies. Our results underscore the potential of these compounds as valuable NLO materials, particularly highlighting the promising prospects of GRY@SS2.

Hydrogen storage on MgO supported TiMgn (n = 2–6) clusters: A first principle investigation

The current study explores the potential of MgO-supported finite-sized TiMgn (n = 2–6) nanoclusters as hydrogen storage materials, employing density functional theory with a spin-polarized generalized gradient approximation (GGA). These systems' structural stability and electronic characteristics reveal that supported clusters offer superior hydrogen storage capabilities compared to their unassisted counterparts. Various parameters, including cluster-adsorption energy (Eads), hydrogen-adsorption energy in supported clusters (Eads-H), HOMO-LUMO gap, vertical ionization potential (VIP), vertical electron affinity (VEA), chemical potential (μ), and chemical hardness (ɳ) are computed. Substrate support notably enhances the thermodynamic stability and chemical reactivity of the TiMg5 cluster when contrasted with the bare TiMg5 cluster. Furthermore, a remarkable increase in the gravimetric hydrogen storage density, from 1.63 wt% for bare Mg5 clusters to 3.45 wt% for bare TiMg5 clusters, reaching 5.62 wt% in the supported TiMg5 cluster system is observed. These findings indicate the substrate-supported TiMg5 cluster as a promising candidate for hydrogen storage applications.

Energetic and Electronic Properties of UO0/± and UF0/±.

High-level electronic structure calculations were conducted to examine the bonding and spectroscopic properties of the UO0/± and UF0/± diatomic molecules. The low-lying Ω states were described by using multireference SO-CASPT2 calculations. The adiabatic electronic affinity (AEA), adiabatic ionization energy (IE), and bond dissociation energy (BDE) were calculated at the Feller-Peterson-Dixon (FPD) level. The ground state of UO is predicted to be 5I4, and that of UF is 4I9/2. The calculated AEAs of UO and UF are 1.123 and 0.453 eV, respectively, and the corresponding IEs are 5.976 and 6.278 eV. The BDE of UO (749.5 kJ/mol) is predicted to be considerably higher than that of UF (627.2 kJ/mol), and both are higher than those predicted for UB, UC, and UN. NBO calculations show strong ionic character for the ground states of UO and UF and bond orders that range from 2 to 3 and from 1 to 2, respectively. Comparisons of the calculated properties to those of the series comprising UB, UC, and UN diatomic molecules are given.

Searching for Evidence of Subchromospheric Magnetic Reconnection on the Sun

Within the coronae of stars, abundances of those elements with low first ionization potential (FIP) often differ from their photospheric values. The coronae of the Sun and solar-type stars mostly show enhancements of low-FIP elements (the FIP effect) while more active stars such as M dwarfs have coronae generally characterized by the inverse-FIP (I-FIP) effect. Highly localized regions of I-FIP effect solar plasma have been observed by Hinode's EUV Imaging Spectrometer in a number of highly complex active regions (ARs), usually around strong light bridges of the umbrae of coalescing/merging sunspots. These observations can be interpreted in the context of the ponderomotive force fractionation model, which predicts that plasma with I-FIP effect composition is created by the refraction of waves coming from below the plasma fractionation region in the chromosphere. A plausible source of these waves is thought to be reconnection in the (high-plasma-β) subchromospheric magnetic field. In this study, we use the 3D visualization technique of Chintzoglou & Zhang combined with observations of localized I-FIP effect in the corona of AR 11504 to identify potential sites of such reconnection and its possible consequences in the solar atmosphere. We found subtle signatures of episodic heating and reconnection outflows in the expected places, in between magnetic flux tubes forming a light bridge, within the photosphere of the AR. Furthermore, on either side of the light bridge, we observed small antiparallel horizontal magnetic field components, supporting the possibility of reconnection occurring where we observe I-FIP plasma. When taken together with the I-FIP effect observations, these subtle signatures provide a compelling case for indirect observational evidence of reconnection below the fractionation layer of the chromosphere, however direct evidence remains elusive.

Compositional Metrics of Fast and Slow Alfvénic Solar Wind Emerging from Coronal Holes and Their Boundaries

We seek to understand the composition and variability of fast solar wind (FSW) and slow Alfvénic solar wind emerging from coronal holes (CHs). We leverage an opportune conjunction between Solar Orbiter and Parker Solar Probe (PSP) during PSP Encounter 11 to include compositional diagnostics from the Solar Orbiter Heavy Ion Sensor as these variations provide crucial insights into the origin and nature of the solar wind. We use potential field source surface and magnetohydrodynamic models to connect the observed plasma at PSP and Solar Orbiter to its origin footpoint in the photosphere and compare these results with the in situ measurements. A very clear signature of a heliospheric current sheet crossing as evidenced by enhancements in low first ionization potential (FIP) elements, ion charge state ratios, proton density, low Alfvénicity, and polarity estimates validates the combination of modeling, data, and mapping. We identify two FSW streams emerging from small equatorial CHs with low ion charge state ratios, low FIP bias, high Alfvénicity, and low footpoint brightness, yet anomalously low alpha particle abundance for both streams. We identify high-Alfvénicity slow solar wind emerging from the overexpanded boundary of a CH having intermediate alpha abundance, high Alfvénicity, and dips in ion charge state ratios corresponding to CH boundaries. Through this comprehensive analysis, we highlight the power of multi-instrument conjunction studies in assessing the sources of the solar wind.

The electronic structure, optical property and n-type conductivity for W-doped α-Ga2O3: hybrid functional study

Based on the hybrid functional method, the electronic structure, optical property and electron effective mass of α-Ga2O3, together with the properties for intrinsic and extrinsic defects incorporated into α-Ga2O3 are studied. Obtained results indicate the α-Ga2O3 possesses a wide band gap (5.31 eV), small electron effective mass (0.22 m0) and a high visible light transmittance. The nonstoichiometric α-Ga2O3 is not an excellent n-type semiconductor. To improve the n-type conductivity, the W-doped α-Ga2O3 is studied. We find that W Ga is a promising n-type defect due to its relatively small ionization energy ϵ(0/+) (0.30 eV). When the equilibrium fabrication method is selected, the WO2 is a promising dopant source. Using the equilibrium fabrication method, the defect complex (V O+ W Ga) would be formed, and the ionization energy ϵ(0/+) for defect complex (V O + W Ga) would decrease to 0.08 eV, which implies that a great number of free electrons could be induced in the samples. We expect that this work can promote the understanding of the n-type conductivity for α-Ga2O3 and provide significant insights for the development of a transparent n-type semiconductor.

A theoretical study on the electronic and optical properties of M-TiO2/ZnO (M=Li, Na, K, Fe) toward application in photocatalysis

This study employs the tight-binding density functional method GFN1-xTB to investigate the structural and electronic properties of TiO2-ZnO and TiO2-ZnO composite materials modified by Li, Na, K, and Fe metals. Computational analyses reveal the formation of weak covalent bonds between the TiO2 and ZnO components within the composite system. Doping TiO2-ZnO with metals induces significant alterations in the electronic structure, particularly in terms of ionization energy and global electrophilic index. The UV-VIS spectra are calculated using real-time time-dependent density functional theory with xTB Hamiltonians. The obtained results demonstrate minimal impact of metal presence on the absorption spectrum of TiO2-ZnO, but significant influence on the recombination potential of photogenerated charge carriers. It is suggested that Fe/TiO2-ZnO and Li/TiO2-ZnO will demonstrate higher photocatalytic activity than the pristine TiO2-ZnO material.

Comprehensive Analysis of E478 Single-Component Epoxy Resin and Tungsten-E478 Interface for Metallic-Polymer Composite Electron Source Applications.

This study provides comprehensive elemental, optical, and energy gap characteristics of the E478 single-component epoxy resin. This type of epoxy resin has imperative applications in medium voltage insulation and cold field emission of electrons. X-ray photoelectron spectroscopy (XPS), Raman spectroscopy, and hydrogen nuclear magnetic resonance (1H-NMR) were used to study the elemental and structural analyses, ultraviolet photoelectron spectroscopy (UPS) was used to obtain the local work function and the ionization potential energies, and ultraviolet/visible light spectroscopy (UV/VIS) was used to report the optical and energy gap characteristics of the epoxy resin being studied. Moreover, the UPS and UV/VIS analyses were merged to obtain the electron affinity of the E478 epoxy resin and to study the epoxy's energy band diagram and the tungsten-epoxy interface band structure. The results showed that the E478 epoxy resin is considered an n-type semiconductor of energy gap ∼3.94 eV, local work function ∼3.42 eV, ionization potential ∼6.10 eV, electron affinity ∼2.16 eV, and tungsten-epoxy Schottky contact barrier height ∼2.50 eV.

Range Different of Mono-Energetic 290 MeV/u Carbon Ion Across Geant4 Version with Variation of I-values

The mean ionization potential (I-value) is a primary determinant of the position of the heavy ion Bragg peak. To minimize their impact on beam range errors and quantify their uncertainties, the currently used I-values in Geant4 material database are revisited. The study aims at comparing set of I-values in different Geant4 versions and cross validation with PHITS Monte Carlo (MC) code. The Bragg curves of mono-energetic 290 MeV/u carbon ion beams in a Polymethyl Methacrylate (PMMA) phantom were simulated using Geant4 versions 10.6.2 and 11.2.1. Similar beam energies were replicated using the PHITS code. The Bragg curves showed good agreement between the two versions of Geant4 MC code for an I-value of 74 eV, corresponding to G4_PLEXIGLASS in the material database. When the I-value was lowered to 65 eV and 48 eV, the Bragg curves from Geant4 version 11.2.1 shifted to shallower depths. This research provides insights for evaluating the Geant4 physics model.

Unravelling structural features of small molecules for photochemical transformation of environmental contaminants

Small molecules, including natural metabolites, organic matter decomposition products, and engineered oxidation byproducts, are widespread in aquatic environment. However, the limited understanding of the photochemical interactions of these small molecules with water pollutants hampers the development of effective environmental protection strategies. This study explores the structural features governing the photochemical transformation of toxic oxyanions by α- and β-dicarbonyl compounds. By integrating experimental observations with quantum chemical calculations, a robust correlation network was constructed. The correlation network reveals that the reactivity of small organic molecules with oxyanions could be quantitively predicted by their intrinsic properties, such as electronic transition energy, bond dissociation energy, molecular softness, molecular orbital gap, atomic charge, and molecular surface local ionization energy. This network maps the relationship between the molecular architecture of chemicals and their photochemical behaviors. This perspective offers fresh insights into the photochemical behaviors of small molecules in diverse environmental and chemical contexts and are helpful for developing advanced water treatment strategies toward a sustainable future.