A C 8 high-performance liquid chromatography (HPLC) method for the separation of molecular species of phosphatidylcholines (PCs) was developed. This method uses a linear gradient of 90–100% methanol containing ammonium hydroxide as ion suppressor and is suitable for metabolic studies using both UV detection at 205 nm and radioactivity flow detection. The elution order of a given PC is inversely related to the polarity of its fatty acid constituents. For acyl chains with lower polarity, elution time increases as follows: ricinoleic acid<linolenic acid<myristic acid<palmitoleic acid<palmitelaidic acid<arachidonic acid<linoleic acid<palmitic acid<oleic acid<elaidic acid<petroselinic acid<hexadecyl ether<stearic acid<arachidic acid. This elution order is similar to that of fatty acids separated by a C 18 HPLC method we have previously reported. A PC containing a cis-fatty acid elutes slightly earlier than its trans-fatty acid isomer. The polarity of the acyl chain in the sn-2 position of a PC has slightly more influence on elution order than the acyl chain in the sn-1. Another C 8 HPLC method was developed for the separation of lysophosphatidylcholines ( lysoPCs) using a more polar eluent. The elution orders of lysoPCs depend on their fatty acid constituents and seem to be the same as the fatty acid order of the PC.