Three-dimensional (3D) target reconstruction from inverse synthetic aperture radar (ISAR) data has a wide application in target scattering modelling, detection, and identification. In ISAR imaging of targets with complex motions such as the non-cooperative manoeuvring targets, the scattering centres on the target may rotate slowly in 3D space during the observation time. In this study, the authors have developed a new formulation for 3D target geometry reconstruction from the scattering centres high-resolution range (HRR) measurements, based on target motion features. First, after the translation compensation, the multi-view HRR of the scattering centres is extracted by HR spectral estimation technique. Then, the multi-view measurements data without correspondence information are associated using the multiple hypotheses tracking algorithm. Finally, the 3D target geometry and motion are reconstructed from the singular value decomposition of the correlated HRR data matrix. The effectiveness of the proposed algorithm is demonstrated by both simulated and real data experiment results.