The impoundment of Aoos springs was created in 1990 to facilitate hydroelectric production, and fish fauna has been enriched through the years due to deliberate or accidental fish stockings, with certain invasive alien fish species arising (i.e., Lepomis gibbosus, Carassius gibelio), some of which are ranked among the most dangerous species for global biodiversity. A three-year monitoring survey was conducting to map the nesting areas of Pumpkinseed, L. gibbosus, to assess the effectiveness of electrofishing as an active method to reduce the spread of the corresponding species and to identify the impact of the L. gibbosus on native species. The largest percentage of nests was found in areas with silty-sand bottoms (53.4%) and low vegetation. The potential nesting area was estimated at 1.97 km2 and the area of confirmed nesting was 0.33 km2. The species appeared to nest in a small area, compared to the potential nesting area. The results also indicate that a significant percentage of the target species (71.6% of the total number of species) was removed, with an average time per sampling of 1.2 ± 1 h, whereas the impact on the other native species was minimal. These results are important for designing and implementing programs for the eradication or reduction of L. gibbosus in the impoundment of Aoos springs.