Intertidal Environments Research Articles

Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis

Consisting of trees, climbers and herbs exclusively in the intertidal environments, mangrove forest is one of the most extreme and vulnerable ecosystems of our planet and has long been of great interest for biologists and ecologists. Here, we first assembled the chromosome-scale genome of a climber mangrove plant, Dalbergia candenatensis. The assembled genome size is approximately 474.55 Mb, with a scaffold N50 of 48.1 Mb, a complete BUSCO score of 98.4%, and a high LTR Assembly Index value of 21. The genome contained 283.46 Mb (59.74%) repetitive sequences, and 29,554 protein-coding genes were predicted, of which 87.54% were functionally annotated in five databases. The high-quality genome assembly and annotation presented herein provide a valuable genomic resource that will expedite genomic and evolutionary studies of mangrove plants and facilitate the elucidation of molecular mechanisms underlying the salt- and water-logging-tolerance of mangrove plants.

Evolution of the lipoxygenase gene family in Pyropia haitanensis and its response to biotic and abiotic stresses

Macroalgae contain a chemically diverse and unique set of oxylipins that derived from lipid peroxidation play pivotal roles in response to various environmental stresses in the intertidal zone. Specific enzymes involved in biosynthesizing these oxylipins remain largely unknown. Lipoxygenase (LOX) is a key enzyme in the oxylipin biosynthetic pathway. Here, six homologous LOX genes were identified in Pyropia haitanensis. To investigate the evolutionary status of the LOX gene family in red algae and its role in the adaptation of P. haitanensis to the intertidal environment, this study analyzed the evolution, structure, and enzymatic activities of these genes. Phylogenetic analysis and homologous sequence alignment indicated that the P. haitanensis LOX genes had two evolutionary origins. PhLOX and PhLOX2 possess an SRPBCC domain at the N-terminus that may have been acquired from marine bacteria through horizontal gene transfer, while PhLOX3–6 may have been acquired from cyanobacteria. Cis-Regulatory analysis revealed numerous elements upstream of the PhLOX genes associated with abiotic stress and hormone regulation, as well as binding sites for defense-related transcription factors. The in-vitro enzymatic activity of PhLOXs was detected, revealing that PhLOX and PhLOX2 exhibited the highest activities. PhLOX3–6 showed a substrate preference for eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), but it had lower activity. The transcriptional expression levels of the six PhLOX genes varied under different biotic and abiotic stresses. For example, all PhLOX genes were significantly upregulated after mechanical damage, while PhLOX5 responded to low temperatures. In summary, P. haitanensis acquired a series of LOX genes from marine bacteria and cyanobacteria during its evolutionary history, among which PhLOX and PhLOX2 were selected as the likely primary functional genes. Its functional diversity to cope with various environmental stresses is achieved through the complex transcriptional regulation of PhLOX genes.

Biological traits of a commercial mussel species Mytilus platensis from the South Atlantic Ocean: Environmental drivers affecting on its intertidal population

Population density, morphometric relationships, maximum age and shell growth rate were studied in an intertidal commercial mytilid species, the blue mussel Mytilus platensis d’Orbigny, 1842, at Villa Gesell (37° 15′S; 56° 57′W), Argentina, Southwest Atlantic Ocean. The population density and mean shell length showed variation across the year, i.e., the month with the highest density (December) was mostly characterized by smaller sized individuals, representing the newly settled recruits during the austral summer months. Shell cross sections and acetate peels of M. platensis revealed an internal shell growth pattern alternating broad opaque and narrow translucent bands, corresponding to fast and slow-growing periods, respectively. Translucent bands representing external rings were formed mostly during July, coinciding with a decrease in sea water temperature (austral winter) and gonadal maturation processes. Data confirmed the annual formation of translucent bands in this species, showing a maximum age of 8 years. The generalized von Bertalanffy growth curve showed values of SL∞ = 38.46 mm, k = 0.28 yr−1 and t0 = −0.57 yr−1 (R2 = 0.80). Compared to studies of subtidal populations, lower shell growth rate in this intertidal population were observed, which may be associated with the stressful environmental conditions in this habitat, such as desiccation, exposure to waves and fluctuating sea water temperature. The characteristics described throughout the study highlight that the variability associated with intertidal environments could limit the sustainability of commercial exploitation of M. platensis in these ecosystems compared with conspecific subtidal populations.

Hot spots drive uptake and short‐term processing of organic and inorganic carbon and nitrogen in intertidal sediments

AbstractThis study uses dual‐labeled (13C and 15N) stable isotope applications to examine microbial uptake and short‐term processing of carbon (C) and nitrogen (N) from organic and inorganic compounds in subtropical intertidal sediment. Four treatment applications were applied: (1) algal dissolved organic matter (DOM), (2) amino acid mixture, (3) glucose and , and (4) NaHCO3 and to assess bioavailability effects on processing (1 vs. 2) and short‐term processing for OM fixed via microphytobenthos only (pennate diatom dominated) (4) vs. material taken up by the entire microbial community (3) across 24 h. 13C from algal‐DOM was preferentially used by the microbial community vs. 15N. At 24 h more 13C from algal‐DOM remained in microbial biomass indicating use of labeled precursor molecules to form biomass. Conversely, 13C from the amino acid treatment was not incorporated into biomass and was either rapidly respired to DIC or discarded as the in situ microbial community preferentially used and retained 15N from amino acids. Short‐term export of 13C as CO2 from glucose was lower than from microphytobenthos‐C, while retention of 15N from was similar between treatments (3 and 4) despite doubling the application N concentration, suggesting potentially higher glucose‐stimulated 15N export via nitrification–denitrification that was not confirmed via flux measurements in this study. Despite careful site selection for similar tidal exposure and sediment types among the three estuaries, the uptake and processing of labeled substrate varied substantially between replicates and sites which challenged traditional statistical analysis. Disproportionate processing of substrates occurring in sediment hotspots of microbial activity can cause variability spanning orders of magnitude which was found to be widespread through comparison of our results against 19 previous studies in intertidal settings. Development of robust analytical techniques to handle variability from abiotic and biotic factors will allow greater clarity surrounding in situ biogeochemical processing in intertidal environments.

The role of environment descriptors and seagrass biometrics in shaping macrobenthic assemblages’ structure in intertidal Zostera noltei meadows

The present study describes macroinvertebrate assemblages in three Zostera noltei meadows, following a salinity gradient along the Aveiro lagoon (Portugal). The main environmental descriptors and Z. noltei biometrics were studied to provide a model of the multivariate macroinvertebrate assemblage structure. The macroinvertebrate assemblage structure in the meadow close to the lagoon opening was significantly different. This could be explained by its higher organic matter content and salinity values. Our model highlighted that 72% of the variation on macroinvertebrate assemblage structure was explained by the studied variables, being organic matter, salinity and sediment median grain size the most relevant factors. Moreover, the number of Z. noltei shoots, and cover of the invasive species Agarophyton aff. vermiculophyllum were also significant. The strong relationship between macroinvertebrates, environmental descriptors and Z. noltei biometrics validates the usefulness of macroinvertebrates as indicators of the seagrass condition in intertidal environments. This study provides baseline data that will be crucial to detect anthropogenic disturbances and preserve Z. noltei meadows, including their associated biodiversity. These data will also allow focusing on certain environmental factors and Z. noltei biometrics that have proved shaping the macroinvertebrate assemblages’ structure.

Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato

Intertidal algae may adapt to environmental challenges by acquiring genes from other organisms and relying on symbiotic microorganisms. Here, we obtained a symbiont-free and chromosome-level genome of Pyropia haitanensis (47.2 Mb), a type of intertidal algae, by using multiple symbiont screening methods. We identified 286 horizontal gene transfer (HGT) genes, 251 of which harbored transposable elements (TEs), reflecting the importance of TEs for facilitating the transfer of genes into P. haitanensis. Notably, the bulked segregant analysis revealed that two HGT genes, sirohydrochlorin ferrochelatase and peptide-methionine (R)-S-oxide reductase, play a significant role in the adaptation of P. haitanensis to heat stress. Besides, we found Pseudomonas, Actinobacteria, and Bacteroidetes are the major taxa among the symbiotic bacteria of P. haitanensis (nearly 50% of the HGT gene donors). Among of them, a heat-tolerant actinobacterial strain (Saccharothrix sp.) was isolated and revealed to be associated with the heat tolerance of P. haitanensis through its regulatory effects on the genes involved in proline synthesis (proC), redox homeostasis (ggt), and protein folding (HSP20). These findings contribute to our understanding of the adaptive evolution of intertidal algae, expanding our knowledge of the HGT genes and symbiotic microorganisms to enhance their resilience and survival in challenging intertidal environments.

A Novel Approach for Autonomous Densely Spaced Acquisition of Buried Objects in Intertidal Environments—Field Examples From Avaldsnes, Norway

ABSTRACTUnderwater archaeology relies on expensive and time‐consuming invasive methods for identifying and excavating objects buried in the seabed or identifying layers in shallow and intertidal environments. Especially shallow and intertidal environments are challenging due to locally high levels of sedimentation that offer good conditions for preserving organic material, that is, archaeological objects, in stabile and low‐oxygen environments. We present a system capable of dense (25 cm × 25 cm) survey coverage that enables nondestructive decimetre‐scale visualization of buried objects and sedimentary layers lying in the subsurface. The system comprises an autonomous surface vehicle (ASV) equipped with a single‐channel 2D Chirp sonar. A description of the vehicle design is presented, and results from five field tests demonstrate the ability of the system to collect high‐resolution acoustic data in a variety of shallow water environments. The system shows an example of the linearized zero offset reflectivity inversion dataset, visualizing a known buried shipwreck from the medieval period in Avaldsnes, Norway. The ASV system holds global implications as it can serve as a noninvasive first‐stage survey in sensitive heritage or archaeological areas. Areas where traditional methods are challenging, or invasive methods are dissuaded.

Contrast in larval sensitivity to low pH in sea urchins from neighbouring seagrass meadows at Inhaca Island, Mozambique

Ocean acidification presents a major threat to marine life, and a large body of evidence has documented its negative effects on various marine species and ecosystems. Recent meta-analyses highlight the key role of local adaptation and have linked species’ sensitivity to extremes of the present range of pH variability. More specifically, ‘physiological tipping points’ can be correlated with the lowest experienced pH where the organisms live. We verified this hypothesis by comparing the responses of larvae of the collector urchin Tripneustes gratilla originating from two neighbouring seagrass meadows at Inhaca Island in southern Mozambique. The two seagrass meadows experience different conditions: the site at the Inhaca Marine Biology Research Station (Estação de Biologia Marítima de Inhaca, EBMI) is subtidal, and the site at Banguá is intertidal. Larvae of adults collected from the two sites were cultured in the laboratory under four different target pH treatments (8.04, 7.67, 7.46 and 7.29) for 7 days. The results showed an overall negative effect of lower pH on survival and growth as well as on an index of symmetry. Larvae originating from the intertidal seagrass habitat at Banguá which experiences large pH fluctuations were more sensitive to a lower pH than those from the subtidal seagrass habitat at EBMI. This finding suggests that different mechanisms for pH tolerance and local adaptation may apply in subtidal versus intertidal environments. Consequently, the unifying principle that physiological tipping points are correlated with the extreme low pH in the present range of variability, may reach its limit in increasingly extreme environments under natural conditions.

A 14-amino acid cationic peptide Bolespleenin334-347 from the marine fish mudskipper Boleophthalmus pectinirostris exhibiting potent antimicrobial activity and therapeutic potential

Antimicrobial peptides (AMPs) are an important component of innate immunity in both vertebrates and invertebrates, and some of the unique characteristics of AMPs are usually associated with their living environment. The marine fish, mudskipper Boleophthalmus pectinirostris, usually live amphibiously in intertidal environments that are quite different from other fish species, which would be an exceptional source of new AMPs. In the study, an AMP named Bolespleenin334-347 was identified, which was a truncated peptide derived from a new functional gene found in B. pectinirostris, that was up-regulated in response to bacterial challenge. Bolespleenin334-347 had only 14 amino acid residues, including five consecutive arginine residues. It was found that the peptide had broad-spectrum antibacterial activity, good thermal stability and sodium ion tolerance. Bolespleenin334-347 killed Acinetobacter baumannii and Staphylococcus aureus by disrupting the structural integrity of the bacterial membrane, leading to leakage of the cellular contents, and inducing accumulation of bacterial endogenous reactive oxygen species (ROS). In addition, Bolespleenin334-347 effectively inhibited biofilm formation of A. baumannii and S. aureus and long-term treatment did not lead to the development of resistance. Importantly, Bolespleenin334-347 maintained stable activity against clinically multi-drug resistant bacterial strains. In addition, it was noteworthy that Bolespleenin334-347 showed superior efficacy to LL-37 and vancomycin in a constructed mouse model of MRSA-induced superficial skin infections, as evidenced by a significant reduction in bacterial load and more favorable wound healing. This study provides an effective antimicrobial agent for topical skin infections with potential therapeutic efficacy for infections with drug-resistant bacteria, including MRSA.

Effect of air exposure time on erodibility of intertidal mud flats

This study investigates the influence of air exposure time on the erodibility of intertidal mud flats, emphasizing the role of evaporation in altering sediment strength and cohesion. Through a comprehensive approach combining laboratory experiments, fieldwork, and numerical modelling, it explores the dynamic interactions between sediment properties and environmental conditions. The research reveals that drying significantly reduces sediment erodibility, with pronounced effects observed during the initial hours of air exposure. Laboratory tests demonstrate a direct correlation between drying time and increased yield stress for both artificial and field-derived mud samples. Field observations further support these results, showing spatial and temporal variations in water content and shear strength across various locations on a tidal flat. The study emphasizes the critical impact of mud content on water retention and the subsequent effect on sediment stability. The incorporation of drying time into erosion formulations within a numerical model highlights the importance of considering evaporation processes in predicting the morphological evolution of tidal flats. This research contributes to a better understanding of sediment transport dynamics in intertidal zones, offering insights into the mechanisms driving the growth and stability of mud flats. It underscores the necessity of integrating evaporation effects into cohesive sediment transport models to enhance the accuracy of predictions concerning the erosion and accretion of intertidal environments.

Upside down: Resilience and recolonization of overturned stromatolite from the Maastrichtian-Danian Yacoraite formation (northwestern Argentina)

Stromatolites are organo-sedimentary structures, internally laminated, which grow attached to the substrate. This lamination mirrors the dynamic interaction of environmental and biological factors where its formation takes place. However, some stromatolites from the Yacoraite Formation, from Amblayo locality, in northwestern Argentina, present an unconventional internal structure characterized by bilateral symmetry, where the development of lamination extends towards both sides of an imaginary plane.This contribution reports a multi-scale analysis of these particular stromatolites, with the aim of determining the extent to which environmental factors have influenced their internal structure. In addition to this, a sequence of stages that gave rise to these organo-sedimentary structures will be proposed.Results suggest a microbialitic growth by in-situ biologically induced, carbonate precipitation, which was carried out in a shallow intertidal environment with good luminosity and significant sedimentary input. However, the stromatolitic growth occurred over two stages, interrupted by a stochastic event that generated a overturning of the structure, providing a new colonizing surface for growth of microorganisms and resulting in a bilateral internal structure.The characterization of these stages, including the overturning of the structure, not only provides a highly accurate proxy for reconstructing punctual environmental conditions of the Yacoraite Formation, but also opens up a field of discussion focused on the resilience and recolonization capacity of stromatolite-producing microorganisms after stochastic events.

Distributed acoustic sensing for seismic surface wave data acquisition in an intertidal environment

The application of distributed acoustic sensing (DAS) for shallow marine seismic investigations is assessed, in particular with respect to the collection of seismic surface wave data in an intertidal setting. Appropriate selection and directional sensitivity of fiber-optic cables is considered and the measured data is validated with respect to conventional seismic data acquisition approaches, using geophones and hydrophones, along with independent borehole and seismic cone penetration test (SCPT) data. In terms of cable selection, a reduction in amplitude and frequency response of an armored cable is observed, when compared with an unarmored cable. For seismic surface wave surveys in an offshore environment where the cable would need to withstand significant stresses, the use of the armored variant with limited loss in frequency response may be acceptable from a practical perspective. The DAS approach also has indicated good consistency with conventional means of surface wave data acquisition, and the inverted [Formula: see text] also is very consistent with downhole SCPT data. Observed differences in phase velocity between high tide (Scholte wave propagation) and low tide (Rayleigh wave propagation) are not thought to be related to the particular type of interface wave due to shallow water depth. These differences are more likely to be related to the development of capillary forces in the partially saturated granular medium at low tide. Overall, this study demonstrates that our novel approach of DAS using seabed fiber-optic cables in the intertidal environment is capable of rapidly providing near-surface S-wave velocity data across considerable spatial scales (multikilometer) at high resolution, which is beneficial for the design of subsea cables routes and landfall locations. The associated reduction in deployment and survey duration, when compared with conventional approaches, is particularly important when working in the marine environment due to potentially short weather windows and expensive downtime.

Identification of tumor necrosis factor receptor 1 and its association with LPS-induced apoptosis in Onchidium reevesii

The sea slug (Onchidium reevesii) inhabits intertidal environments and face environmental pressures and disease threats. The immune system of mollusks plays a crucial role in their defense against pathogens and maintaining homeostasis. The molecular mechanisms underlying its immune defense and response to pathogens remain largely unexplored. This study aimed to isolate and identify the cDNA sequence of tumor necrosis factor receptor 1 (TNFR1) in the sea slug. The obtained cDNA sequence was named OrTNFR1. Like other members of the TNF receptor superfamily, OrTNFR1 contains a signal peptide, TNF homologous domain, and death-related domain. qPCR results showed that OrTNFR1 was highly expressed in the hepatopancreas, blood, and intestines of sea slug. This indicates that OrTNFR1 plays a role in the immune-related tissues of sea slug and is consistent with the broad expression of TNFR1 in bivalves. To investigate the inducible expression pattern and downstream effects of OrTNFR1 in response to lipopolysaccharide (LPS) stimulation, we studied the functional role of the OrTNFR1 gene by stimulating with LPS in vivo and suppressing OrTNFR1 expression using siRNA technology. Our findings demonstrate that LPS stimulation rapidly up-regulates the expression of OrTNFR1 in the hepatopancreas, blood, and intestine of the sea slug. Moreover, si-TNFR1 effectively inhibits LPS-induced TNFR1 expression and its downstream genes. Additionally, we discovered that inhibiting OrTNFR1 reduces LPS-induced cell apoptosis and the expression of apoptosis-associated protein Caspase.TNFR1 is involved in the immune defense of the sea slug, and blocking TNFR1 effectively attenuates LPS-induced cell apoptosis through the TNFR1 pathway. This finding suggests that inhibiting TNFR1 in the sea slug may serve as a potential approach to reduce cell apoptosis. As a shell-less living in harsh intertidal environments, TNFR1 likely participates in its innate immunity. Therefore, studying the TNFR1 pathway contributes to understanding the innate immune signaling pathway in the sea slug, further elucidating host defense against pathogens and apoptotic functions.

PREVALENCE OF OPECOELID TREMATODES (TREMATODA: DIGENEA: OPECOELIDAE) IN THE WOOLLY SCULPIN CLINOCOTTUS ANALIS FROM THE PACIFIC COAST OF THE BAJA CALIFORNIA PENINSULA.

Prevalence values for 3 digenean species of the family Opecoelidae were calculated during a half-year period from 20 individuals per month of the fish species Clinocottus analis, collected from an intertidal environment of Baja California, Mexico. Trematode species recovered were Opecoelus adsphaericus, Opecoelus cameroni, and Opecoelus pacificus. Of these, only O. adsphaericus was present throughout the study, whereas O. pacificus and O. cameroni were recorded for 1 or 2 mo, respectively, exhibiting relatively low prevalence values. The decrease in prevalence of O. adsphaericus coincides with the appearance of O. pacificus and O. cameroni; these last 2 species were found only in the largest hosts, and their presence represents new records for Mexican marine fauna.

Polymorphisms in the cysteine dioxygenase gene and their association with taurine content in the Pacific oyster Crassostrea gigas

The Pacific oyster Crassostrea gigas is rich in taurine, which is crucial for its adaptation to the fluctuating intertidal environment and presents significant potential in improving taurine nutrition and boosting immunity in humans. Cysteine dioxygenase (CDO) is a key enzyme involved in the initial step of taurine biosynthesis and plays a crucial role in regulating taurine content in the body. In the present study, polymorphisms of CDO gene in C. gigas (CgCDO) and their association with taurine content were evaluated in 198 individuals. A total of 24 single nucleotide polymorphism (SNP) loci were identified in the exonic region of CgCDO gene by direct sequencing. Among these SNPs, c.279G>A and c.287C>A were found to be significantly associated with taurine content, with the GG and AA genotype at the two loci exhibiting enhanced taurine accumulation (p < 0.05). Haplotype analysis revealed that the 279GG/287AA haplotype had the highest taurine content of 29.24 mg/g, while the 279AA/287CC haplotype showed the lowest taurine content of 21.19 mg/g. These results indicated that the SNPs of CgCDO gene could influence the taurine content in C. gigas and have potential applications in the selective breeding of high-taurine varieties.

Genetic evidence for functions of Chloroplast CA in Pyropia yezoensis: decreased CCM but increased starch accumulation

In response to the changing intertidal environment, intertidal macroalgae have evolved complicated Ci utilization mechanisms. However, our knowledge regarding the CO2 concentrating mechanism (CCM) of macroalgae is limited. Carbonic anhydrase (CA), a key component of CCM, plays essential roles in many physiological reactions in various organisms. While many genes encode CA in the Pyropia yezoensis genome, the exact function of specific CA in P. yezoensis remains elusive. To explore the particular function of chloroplast CA in intertidal macroalgae, we produced chloroplast-localized βCA1 knockdown mutants of P. yezoensis through RNA interference, and Pyβca1i mutants (hereinafter referred to as ca1i) showed a notable decrease in leaf area and overall biomass, as well as decreased soluble protein and unsaturated fatty acid content under different DIC conditions. However, ca1i mutants showed relatively higher starch content compared to the wild-type. The activity of enzymes involved in the Calvin cycle, photorespiration, Pentose-phosphate pathway, and floridean starch synthesis of P. yezoensis indicated an effective starch accumulation pathway after the interference of βCA1. All results suggest that the decreased activity of PyβCA1 impaired the CCM and development of thalli of P. yezoensis, but stimulated starch accumulation in the cytoplasm through feedback to the photorespiration pathway and pentose phosphate pathway to replenish intermediates for the Calvin cycle. This study is the first to explore the specific function of chloroplast CA in intertidal macroalgae using genomic technology. The results provide valuable insights into the adaption mechanisms of intertidal macroalgae to their environment.

Genome-wide analysis to uncover how Pocillopora acuta survives the challenging intertidal environment

Characterisation of genomic variation among corals can help uncover variants underlying trait differences and contribute towards genotype prioritisation in coastal restoration projects. For example, there is growing interest in identifying resilient genotypes for transplantation, and to better understand the genetic processes that allow some individuals to survive in specific conditions better than others. The coral species Pocillopora acuta is known to survive in a wide range of habitats, from reefs artificial coastal defences, suggesting its potential use as a starter species for ecological engineering efforts involving coral transplantation onto intertidal seawalls. However, the intertidal section of coastal armour is a challenging environment for corals, with conditions during periods of emersion being particularly stressful. Here, we scanned the entire genome of P. acuta corals to identify the regions harbouring single nucleotide polymorphisms (SNPs) and copy number variations (CNVs) that separate intertidal colonies (n = 18) from those found in subtidal areas (n = 21). Findings revealed 74,391 high quality SNPs distributed across 386 regions of the P. acuta genome. While the majority of the detected SNPs were in non-coding regions, 12% were identified in exons (i.e. coding regions). Functional SNPs that were significantly associated with intertidal colonies were found in overrepresented genomic regions linked to cellular homeostasis, metabolism, and signalling processes, which may represent local environmental adaptation in the intertidal. Interestingly, regions that exhibited CNVs were also associated with metabolic and signalling processes, suggesting P. acuta corals living in the intertidal have a high capacity to perform biological functions critical for survival in extreme environments.

Catalogue of juvenile instars of oribatid mites (Acari: Oribatida)the next decade (20142023).

In its traditional, paraphyletic context (sans Astigmata), oribatid mites comprise more than 11,000 known species (Subas 2022). They are largely fungivores and decomposers in organic horizons of soil and have a plesiotypic ontogeny that includes four active, free-living juvenile instars. In a taxonomically organized 2014 catalogue, we summarized literature resources concerning the 805 species for which ontogenetic data (mainly morphological) were available. Herein, we supplement that catalogue with all data known to us that were published during the intervening decade. These relate to 267 species, of which 165 were described prior to 2014. As in the 2014 catalogue, representation is strongest among: the middle-derivative hyporder Nothrina; brachypyline superfamilies that are affiliated with aquatic, semiaquatic or intertidal environments (Limnozetoidea, Ameronothroidea); some eupheredermous groups (Plateremaeoidea, Damaeoidea); and Ceratozetoidea. Also as in 2014, groups that are underreprented, based on their high known diversity, are the ptyctimous Mixonomata (Euphthiracaroidea, Phthiracaroidea) and the brachypyline superfamilies Oppioidea and Oripodoidea.

Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution.

Nypa fruticans (Wurmb), a mangrove palm species with origins dating back to the Late Cretaceous period, is a unique species for investigating long-term adaptation strategies to intertidal environments and the early evolution of palms. Here, we present a chromosome-level genome sequence and assembly for N. fruticans. We integrated the genomes of N. fruticans and other palm family members for a comparative genomic analysis, which confirmed that the common ancestor of all palms experienced a whole-genome duplication event around 89 million years ago, shaping the distinctive characteristics observed in this clade. We also inferred a low mutation rate for the N. fruticans genome, which underwent strong purifying selection and evolved slowly, thus contributing to its stability over a long evolutionary period. Moreover, ancient duplicates were preferentially retained, with critical genes having experienced positive selection, enhancing waterlogging tolerance in N. fruticans. Furthermore, we discovered that the pseudogenization of Early Methionine-labelled 1 (EM1) and EM6 in N. fruticans underly its crypto-vivipary characteristics, reflecting its intertidal adaptation. Our study provides valuable genomic insights into the evolutionary history, genome stability, and adaptive evolution of the mangrove palm. Our results also shed light on the long-term adaptation of this species and contribute to our understanding of the evolutionary dynamics in the palm family.

Four new records of Sipuncula (Annelida) from Northern Brazil.

There are very few taxonomic studies of Brazilian sipunculan worms, and the species occurring along the northern coasts are largely understudied. We report herein the occurrence of four shallow water species along the intertidal zones of Bahia and Pernambuco states. Antillesoma antillarum (Grbe & Oersted, 1858) occurs from underneath beach rocks or within sandstone reefs and may reach high densities. The large species Sipunculus (Sipunculus) nudus Linnaeus, 1766, Sipunculus polymyotus Fisher, 1947, and Xenosiphon branchiatus (Fischer, 1895) were collected in sandy-mud, low-energy intertidal environments. For the first time, we report that sipunculans are collected and used as fishing bait by local fishermen in the Western Atlantic. All species are fully described, including notes on their external and internal anatomy.