A model-based approach is presented for quantitatively decoupling the impacts of non-ideal flow and non-ideal binding in membrane chromatography (MC) capsules at different scales. The internal geometry of Sartobind® capsules with 0.08ml and 1200ml membrane volume is reconstructed from MRI measurements and manufacturer data. Based on this information, computational fluid dynamics (CFD) simulations are used for computing internal flow patterns of both capsules. Measured breakthrough curves (BTC) under non-binding conditions are used for calibrating PFR and CSTR models of the holdup volumes in the Äkta systems. A suitable binding model is determined and the binding parameters are estimated from binding BTC data of the 0.08ml capsule. Due to the decoupling of non-idealities, the binding parameters can be directly transferred between the CFD models of both capsules. This advantage is used for quantitatively predicting BTC data of the 1200ml capsule under binding conditions. The model-based prediction excellently matches with independently measured BTC data, facilitating an extreme scale-up factor of 15,000. The presented approach has previously been shown to be universally applicable to capsules from other vendors with different flow configurations and membrane types.