Ubiquitous pyrite (FeS2) in the earth’s crust features strong reducing capacity, presenting a promising alternative for molecular oxygen (O2) activation to facilitate water purification, but the interfacial electron transfer efficiency was remarkably retarded due to the existed passivation layer and limited reactive sites on the surface of pristine pyrite. Herein, we proposed an effective mechanochemical approach to unlock the potential of pyrite for O2 activation and refractory pollutant degradation. Compared to the inert pristine one, the ball milling-treated pyrite (BMPs) could achieve efficient sulfamethoxazole (SMX) degradation with a rate constant of 0.23 h−1. By a combination of characterizations, batch experiments, and density function theory (DFT) calculations, a clear panorama delineated the consecutive O2 adsorption and activation processes was established. Ball milling treatment could import rich sulfur vacancies (SVs) on pyrite, which unshifted the p-band center of adjacent S for improved O2 adsorption, also narrowed the band gap of BMPs to promote the interfacial electron transfer rate for O2 activation. Singlet oxygen (1O2) was identified as the dominant reactive species for SMX degradation, such non-radical oxidation feature rendered the system with remarkable activity and environmental robustness. Our work lay a foundation for constructing robust pyrite towards stable and efficient environmental remediation applications.