Instream Barriers Research Articles

More than one million barriers fragment Europe's rivers.

Rivers support some of Earth's richest biodiversity1 and provide essential ecosystem services to society2, but they are often fragmented by barriers to free flow3. In Europe, attempts to quantify river connectivity have been hampered by the absence of a harmonized barrier database. Here we show that there are at least 1.2 million instream barriers in 36 European countries (with a mean density of 0.74 barriers per kilometre), 68 per cent of which are structures less than two metres in height that are often overlooked. Standardized walkover surveys along 2,715 kilometres of stream length for 147 rivers indicate that existing records underestimate barrier numbers by about 61 per cent. The highest barrier densities occur in the heavily modified rivers of central Europe and the lowest barrier densities occur in the most remote, sparsely populated alpine areas. Across Europe, the main predictors of barrier density are agricultural pressure, density of river-road crossings, extent of surface water and elevation. Relatively unfragmented rivers are still found in the Balkans, the Baltic states and parts of Scandinavia and southern Europe, but these require urgent protection from proposed dam developments. Our findings could inform the implementation of the EU Biodiversity Strategy, which aims to reconnect 25,000 kilometres of Europe's rivers by 2030, but achieving this will require a paradigm shift in river restoration that recognizes the widespread impacts caused by small barriers.

Effect of low-head dams on reach-scale suspended sediment dynamics in coarse-bedded streams

River infrastructure is one of the primary threats to riverine ecosystems globally, altering hydromorphological processes and isolating habitats. Instream barriers and low-head dams can have significant effects on system connectivity, but despite this, very few empirical studies have assessed the impacts of these structures on suspended sediment transport. Through a paired turbidity study over a 20-month monitoring period we investigated the differences in suspended sediment flux above and below two low-head dams in the south-east of Ireland. Using sediment balance as a proxy for sediment storage, results showed that a net-export of sediment from the study reach occurred for 68% of the high-flow events analysed. As the primary controls on sediment dynamics at the downstream reach depend on sediment availability from upstream, we argue that these results indicate the presence of a substantial local source of sediment between monitoring stations that cannot be explained by natural intra-reach erosional processes. Here we hypothesise that as sediment supply from the catchment becomes exhausted, the structure's impounded zone (typically considered a depositional area) provides a major sediment source to the downstream reach. Our rationale is that if sediment trapped behind the weir is periodically available for transportation at the rates and frequencies observed in this study, then we can infer that both structures must be trapping sediment under lower flows.

Influence of discharge regime on the movement and refuge use of a freshwater fish in a drying temperate region

AbstractUnderstanding how the movement and habitat use of fishes are influenced by flow regimes is important in sustainably managing river ecosystems, particularly in regions undergoing drying due to climate change. Here, we aimed to determine how the movement of a freshwater fish from refuge pools is influenced by discharge and environmental variables in south‐western Australia, a region that has suffered an ~50% reduction in surface flows since the 1970s. We quantified the movement patterns of the freshwater plotosid Tandanus bostocki using acoustic telemetry in two rivers that had different flow regimes and habitat characteristics. We hypothesized that its movements would be positively influenced by discharge and it would also display a high degree of site fidelity. Fifty fish were tagged and monitored across both rivers for a 1‐year period. There was an overall significant positive relationship between daily movements from the monitored refuge pools with both discharge and solar irradiation in both rivers. However, there was a greater probability of movement at a lower magnitude of discharge in the regulated Harvey River, which was attributed to the influence of river gradient and prevalence of instream barriers moderating the effect of flow on movements in the Brunswick River. The species demonstrated a considerable degree of site fidelity and also displayed homing behaviour. The study suggests that the maintenance of key refuge pools during baseflow, and ensuring river connectivity during the key movement periods, would help maintain the viability of the species as river discharge continues to decline due to climate change.

Recent and rapid anthropogenic habitat fragmentation increases extinction risk for freshwater biodiversity.

Anthropogenic habitat fragmentation is often implicated as driving the current global extinction crisis, particularly in freshwater ecosystems. The genetic signal of recent population isolation can be confounded by the complex spatial arrangement of dendritic river systems. Consequently, many populations may presently be managed separately based on an incorrect assumption that they have evolved in isolation. Integrating landscape genomics data with models of connectivity that account for landscape structure, we show that the cumulative effects of multiple in‐stream barriers have contributed to the recent decline of a freshwater fish from the Murray–Darling Basin, Australia. In addition, individual‐based eco‐evolutionary simulations further demonstrate that contemporary inferences about population isolation are consistent with the 160‐year time frame since construction of in‐stream barriers began in the region. Our findings suggest that the impact of very recent fragmentation may be often underestimated for freshwater biodiversity. We argue that proactive conservation measures to reconnect many riverine populations are urgently needed.

RESPONSE OF MIGRATORY SCULPIN POPULATIONS TO BARRIER REMOVAL IN FOUR SMALL LOWLAND URBAN STREAMS IN THE LAKE WASHINGTON BASIN

We examined changes in density, distribution, and size of migratory sculpins (Coastrange Sculpin [Cottus aleuticus] and Prickly Sculpin [C. asper]) in 4 small lowland urban tributaries following the removal of instream barriers. In 3 of the streams, a complete or partial barrier to upstream movements of migratory sculpins was removed. In the 4th stream where sculpin were not known to be present, the lower reach was daylighted (stream channel was reconfigured from an underground culvert to a more natural stream channel at the surface). In Lyon Creek, where a partial barrier was removed, sculpin densities upstream of the barrier site increased only slightly. Poor habitat conditions in this stream section may have limited recovery. In Taylor and Zackuse Creeks, where barriers were also removed, Coastrange Sculpin quickly colonized the stream section upstream of the barrier site and densities became similar to or higher than downstream study sections. In the daylighted Mapes Creek, both sculpin species were common throughout the new channel shortly after the project was completed. In both Lyon and Taylor creeks, body size of migratory sculpin in the upstream section decreased dramatically following barrier improvement. Prior to barrier removal, only a few large sculpin migrated upstream; whereas, after barrier removal sculpin of all sizes were able to move upstream except young-of-the-year. Our results indicate that migratory sculpin have the ability to recolonize new habitats shortly after connectivity is restored, but habitat quality may limit sculpin use of newly accessible areas.

Impacts of artificial barriers on the connectivity and dispersal of vascular macrophytes in rivers: A critical review

Abstract Macrophytes play important functional roles in river ecosystems, providing habitat and food, as well as influencing flow, water chemistry, and sediment dynamics. They also represent an important component of river biodiversity. Artificial river barriers have the potential to disrupt macrophyte dispersal, and compromise their distribution and persistence, but little information is available compared to barrier impacts on fish and macroinvertebrates. Here, we review the mechanisms supporting dispersal of river macrophytes in rivers and evaluate the nature of barrier impacts on macrophytes. Hydrochory (dispersal of propagules by water) is the principal mechanism of downstream dispersal, while zoochory (dispersal of propagules by animals) is likely to be the most important vector of upstream dispersal and inter‐catchment transport. Most studies have focused on the impact of large structures such as dams, and the findings indicate the impact is highly context dependent. Slow‐flowing habitats upstream of dams can act as traps to drifting propagules and thereby interrupt hydrochory. However, the consequences of interrupted hydrochory for downstream populations are unclear. River regulation can result in lower macrophyte diversity, although the lentic habitats associated with reservoirs can also favour an increase in the abundance and richness of macrophyte communities. Instream barriers are unlikely to affect zoochory by birds directly, but barriers are well known to restrict fish movements, so there is considerable potential for barriers to disrupt zoochory by fish, although no empirical study has specifically examined this possibility. There is a paucity of studies examining the impacts of low‐head barriers on macrophyte dispersal. Given the influence of macrophytes on river processes, we call for further research into barrier impacts on macrophyte population dynamics in order to gain a better understanding of the consequences of river fragmentation for fluvial communities and ecosystem functioning.

Individual-based model of juvenile eel movement parametrized with computational fluid dynamics-derived flow fields informs improved fish pass design.

European eel populations have declined markedly in recent decades, caused in part by in-stream barriers, such as weirs and pumping stations, which disrupt the upstream migration of juvenile eels, or elvers, into rivers. Eel passes, narrow sloping channels lined with substrata that enable elvers to ascend, are one way to mitigate against these barriers. Currently, studded eel tiles are a popular substrate. This study is the first to evaluate the flow fields within studded eel tiles and to model the swimming performance of elvers using cellular automata (CA) and individual- (or agent-) based models. Velocities and flow depths predicted by a computational fluid dynamics model of studded eel tiles are first validated against published values for a single installation angle–discharge combination. The validated model is then used to compute three-dimensional flow fields for eel passes at five different installation angles and three inflow discharges. CA and individual-based models are employed to assess upstream passage efficiency for a range of elver sizes. The individual-based model approximates measured passage efficiencies better than the CA model. Passage efficiency is greatest for shallow slopes, low discharges and large elvers. Results are synthesized into an easy-to-understand graphic to help practitioners improve eel pass designs.

Politics and pride: Maintaining genetic novelty may be detrimental for the conservation of Formosa landlocked salmon Oncorhynchus formosanus

Abstract Populations of conservation concern are often rare, restricted in range, and isolated from other populations. This can manifest in low genetic diversity, which reduces the ability of a population to respond to changes in the environment, and in higher levels of inbreeding, which reduce individual fitness. Isolated populations, however, often harbour genetic and phenotypic novelty, which can elicit a strong community sentiment to maintain these populations. Genetic rescue – the introduction of genetic variation to improve fitness – offers potential benefits for isolated and threatened populations, but has associated risks, including a perceived loss in identity if that population is geographically, genetically, and culturally significant. Here, the potential benefits and risks of genetic rescue for isolated freshwater populations are discussed, using the Formosa salmon as an exemplar. Formosa landlocked salmon, a member of the masu salmon complex (Oncorhynchus masou sensu lato), is the southernmost naturally distributed salmonid in the world, occupying a single stream at high elevation in Taiwan. Listed as Critically Endangered, it exhibits continuing low abundance (<5000 individuals). Although Formosa salmon can be genetically distinguished from other masu salmon, its genetic variation is extremely low and genetic factors may now critically affect fitness. There appears to be clear merit for the genetic rescue of Formosa salmon, and test crosses involving other landlocked masu salmon are urgently required. If these test crosses yield individuals of high fitness, guidelines for introductions into the wild are provided. In addition, subpopulations above and below artificial instream barriers to movement require connection via the direct exchange of individuals to minimize any further losses of genetic variation. Insurance populations with independent risk probabilities to the existing population should also be constructed, with continuing connectivity among populations through the direct exchange of individuals.

Prioritizing Stream Barrier Removal to Maximize Connected Aquatic Habitat and Minimize Water Scarcity

AbstractInstream barriers, such as dams, culverts, and diversions, alter hydrologic processes and aquatic habitat. Removing uneconomical and aging instream barriers is increasingly used for river restoration. Historically, selection of barrier removal projects used score‐and‐rank techniques, ignoring cumulative change and the spatial structure of stream networks. Likewise, most water supply models prioritize either human water uses or aquatic habitat, failing to incorporate both human and environmental water use benefits. Here, a dual‐objective optimization model identifies barriers to remove that maximize connected aquatic habitat and minimize water scarcity. Aquatic habitat is measured using monthly average streamflow, temperature, channel gradient, and geomorphic condition as indicators of aquatic habitat suitability. Water scarcity costs are minimized using economic penalty functions while a budget constraint specifies the money available to remove barriers. We demonstrate the approach using a case study in Utah's Weber Basin to prioritize removal of instream barriers for Bonneville cutthroat trout, while maintaining human water uses. Removing 54 instream barriers reconnects about 160 km of quality‐weighted habitat and costs approximately US$10 M. After this point, the cost‐effectiveness of removing barriers to connect river habitat decreases. The modeling approach expands barrier removal optimization methods by explicitly including both economic and environmental water uses.

Restricted movement of prairie fishes in fragmented riverscapes risks ecosystem structure being ratcheted downstream

Abstract Prairie streams are dynamic systems in which habitat patches are sporadically created and lost during extreme hydrological events. The persistence of fish species depends on life‐history traits that facilitate their widespread dispersal to recolonize habitats after stochastic extirpation. Artificial barriers are thought to reduce recolonization opportunities and to ultimately displace populations downstream, but the ecological consequences of lost diversity above the barriers are largely unknown. The susceptibility of four prairie fishes to fragmentation and the consequent risk to stream ecosystem processes are described. The selected species exhibit wide tolerances to environmental stressors, represent unique functional feeding guilds, and have different habitat affinities. The ability of each species to access (jumping ability) and successfully traverse (swimming endurance) simulated instream barriers was quantified in the laboratory. Experimental stream complexes were used to isolate the effects of these species on ecosystem structure and function. These replicated single‐species experiments were compared with ‘no fish’ controls to identify the ecological role of each. Small vertical barriers blocked most passage, and with open access all species were unable to traverse relatively short distances against modest water velocities. Stream fragmentation will alter headwater fish assemblage structure and promote the most mobile species. Each species had slightly different effects on the stream ecosystem structure resulting from their different habitat preferences and diets. Without colonization opportunities from neighbouring populations, disturbance events will alter headwater fish assemblages and may degrade the ecosystem structure above barriers. Fragmented riverscapes interact with harsh disturbance regimes to form an ecological ratchet. Systematic species loss above barriers outweighs the opportunity for improvement, suggesting that ecosystem structure may be moving downstream.

Integration of juvenile habitat quality and river connectivity models to understand and prioritise the management of barriers for Atlantic salmon populations across spatial scales

Diadromous fish populations are strongly affected by in-stream barriers that cause river network fragmentation, constraining productivity or preventing completion of their lifecycle. Removal or reduction of barrier impacts is a restoration measure associated with unambiguous benefits. Management of barriers is therefore often prioritised above other restoration actions. Barrier management is prioritised at local and national scales depending on funding. However, barrier prioritisation is potentially sub-optimal because existing tools do not consider habitat quality. Furthermore, effects of partial barriers (those passable under certain conditions) are uncertain, depending on location and potential cumulative effects.A framework is presented for assessing effects of impassable manmade barriers (IMBs) on longitudinal river network connectivity (percentage of upstream habitat accessible from the river mouth) for Atlantic salmon across spatial scales, using Scotland as an example. The framework integrates juvenile habitat quality and network connectivity models to (1) provide information necessary for local and national prioritisation of barriers, and (2) assess potential effects of passable manmade barriers (PMBs) within a sensitivity framework.If only IMBs are considered, high levels of longitudinal connectivity are observed across most of Scotland's rivers. Barrier prioritisation is sensitive to habitat weighting: not accounting for habitat quality can lead to over- or underestimating the importance of IMBs. Prioritisation is also highly sensitive to the passability of PMBs: if passability drops to <97% (combined up- and downstream passability), the mean effect of PMBs becomes greater than IMBs at the national level. Moreover, impacts on catchment connectivity, and thus production (number of juvenile salmon produced by the river), could be severe, suggesting a better understanding of the passability of PMBs is important for future management of migration barriers. The presented framework can be transferred to other catchments, regions, or countries where necessary data are available, making it a valuable tool to the broader restoration community.

Measuring 30 years of improvements to aquatic connectivity in the Greater Toronto Area

Instream barriers (e.g. dams, weirs and road crossings) fragment aquatic habitat and prevent the upstream movement of fish, impairing the ability of fishes to complete critical life stages, access critical habitat and for dispersal among local populations. Mitigation efforts have improved aquatic connectivity to some degree, but it has been challenging to quantify the overall improvement in connectivity without long-term and costly field assessments. The development of spatially explicit habitat connectivity indices make it possible to evaluate current stream connectivity, and quantify the improvement prior mitigation projects have had on connectivity. We combined a list of instream barrier mitigation projects completed in five watersheds in the Toronto (Ontario, Canada) area from 1987–2016 (mitigated barriers) and a previously established inventory of all known instream barriers in 2016 (current barriers). The cumulative improvement to connectivity was measured for potadromous (remain in tributaries) and diadromous (move between tributaries and lake) fish species using the dendritic connectivity index. Aquatic connectivity improved for diadromous species between 0 and 14.5% and for potadromous species between 0.1 and 4.4% in the five studied watersheds. Some variation in improvement among the watersheds can likely be attributed to differences in mitigation strategies among the watersheds and a historical emphasis on mitigating instream barriers to benefit migratory salmonid species.

Spatial extent of analysis influences observed patterns of population genetic structure in a widespread darter species (Percidae)

Abstract Connectivity among stream fish populations allows for exchange of genetic material and helps maintain genetic diversity, adaptive potential and population stability over time. Changes in species demographics and population connectivity have the potential to permanently alter the genetic patterns of stream fish, although these changes through space and time are variable and understudied in small‐bodied freshwater fish. As a spatially widespread, common species of benthic freshwater fish, the variegate darter (Etheostoma variatum) is a model species for documenting how patterns of genetic structure and diversity respond to increasing isolation due to large dams and how scale of study may shape our understanding of these patterns. We sampled variegate darters from 34 sites across their range in the North American Ohio River basin and examined how patterns of genetic structure and diversity within and between populations responded to historical population changes and dams within and between populations. Spatial scale and configuration of genetic structure varied across the eight identified populations, from tributaries within a watershed, to a single watershed, to multiple watersheds that encompass Ohio River mainstem habitats. This multiwatershed pattern of population structuring suggests genetic dispersal across large distances was and may continue to be common, although some populations remain isolated despite no apparent structural dispersal barriers. Populations with low effective population sizes and evidence of past population bottlenecks showed low allelic richness, but diversity patterns were not related to watershed size, a surrogate for habitat availability. Pairwise genetic differentiation (FST) increased with fluvial distance and was related to both historic and contemporary processes. Genetic diversity changes were influenced by underlying population size and stability, and while instream barriers were not strong determinants of genetic structuring or loss of genetic diversity, they reduce population connectivity and may impact long‐term population persistence. The broad spatial scale of this study demonstrated the large spatial extent of some variegate darter populations and indicated that dispersal is more extensive than expected given the movement patterns typically observed for small‐bodied, benthic fish. Dam impacts depended on underlying population size and stability, with larger populations more resilient to genetic drift and allelic richness loss than smaller populations. Other darters that inhabit large river habitats may show similar patterns in landscape‐scale studies, and large river barriers may impact populations of small‐bodied fish more than previously expected. Estimation of dispersal rates and behaviours is critical to conservation of imperilled riverine species such as darters.

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish

Habitat loss and fragmentation often result in small, isolated populations vulnerable to environmental disturbance and loss of genetic diversity. Low genetic diversity can increase extinction risk of small populations by elevating inbreeding and inbreeding depression, and reducing adaptive potential. Due to their linear nature and extensive use by humans, freshwater ecosystems are especially vulnerable to habitat loss and fragmentation. Although the effects of fragmentation on genetic structure have been extensively studied in migratory fishes, they are less understood in low-mobility species. We estimated impacts of instream barriers on genetic structure and diversity of the low-mobility river blackfish (Gadopsis marmoratus) within five streams separated by weirs or dams constructed 45–120 years ago. We found evidence of small-scale (<13 km) genetic structure within reaches unimpeded by barriers, as expected for a fish with low mobility. Genetic diversity was lower above barriers in small streams only, regardless of barrier age. In particular, one isolated population showed evidence of a recent bottleneck and inbreeding. Differentiation above and below the barrier (FST = 0.13) was greatest in this stream, but in other streams did not differ from background levels. Spatially explicit simulations suggest that short-term barrier effects would not be detected with our data set unless effective population sizes were very small (<100). Our study highlights that, in structured populations, the ability to detect short-term genetic effects from barriers is reduced and requires more genetic markers compared to panmictic populations. We also demonstrate the importance of accounting for natural population genetic structure in fragmentation studies.

Diurnal feeding behavior of the American Eel Anguilla rostrata

Despite potential to structure ecosystem food webs through top-down effects, the trophic interactions of the American Eel Anguilla rostrata remain largely understudied. All previous research on the trophic ecology of American Eel in inland aquatic ecosystems has been conducted in temperate continental regions of the species' range. These studies have led to a paradigm that American Eel is a nocturnally active benthic predator, which most commonly consumes benthic invertebrates. Tropical island streams and rivers have habitats and communities that are distinct from temperate counterparts, but comprise a large portion of the adult habitat in the American Eel's range. We documented a previously undescribed diurnal feeding behavior by American Eel in a Caribbean river and demonstrate that this behavior, and a shift toward more frequent daytime feeding, is linked to periodic mass migrations of postlarvae of amphidromous fish taxa, including the Sicydiine goby Sicydium spp. Our findings indicate that periodic mass migrations of amphidromous postlarvae could function as a potentially important food source for American Eel in tropical regions of its distribution, despite the intermittence of availability. Furthermore, this suggests that the American Eel plays an important role in the structure of tropical lotic food webs through top-down effects that are potentially augmented by instream barriers.

Reduced Gene Flow in Two Common Headwater Fishes in the Ouachita Mountains: A Response to Stream Drying and In-stream Barriers

Stream drying and in-stream barriers can influence migration and recolonization, yet we know little about how these impact population genetics of fishes. We analyzed microsatellite DNA from two common headwater fishes, Longear Sunfish (Lepomis megalotis) and Highland Stoneroller (Campostoma spadiceum), to compare population genetics of fishes in streams with varying degrees of connectivity. We sampled perennial and intermittent streams including examples with and without anthropogenic structures (road crossings). An additional perennial stream with a large waterfall was added to examine potential effects of a natural structure. We collected between 24 and 30 individuals of each species from three equidistant locations along each of five study streams. We found that Longear Sunfish and Highland Stoneroller populations experienced greater reductions in gene flow along the intermittent streams than along the perennial streams. However, the greatest reduction in gene flow between sub-populations generally coi...

Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape.

BackgroundThe actual connectivity between populations of freshwater organisms is largely determined by species biology, but is also influenced by many area- and site-specific factors, such as water pollution and habitat fragmentation. Therefore, the prediction of effective gene flow, even for well-studied organisms, is difficult. The amphipod crustacean Gammarus fossarum is a key invertebrate in freshwater ecosystems and contains many cryptic species. One of these species is the broadly distributed G. fossarum clade 11 (type B). In this study, we tested for factors driving the genetic structure of G. fossarum clade 11 in a human-impacted landscape at local and regional scales. To determine population structure, we analyzed the mitochondrial cytochrome c oxidase 1 (CO1) gene of 2,086 specimens from 54 sampling sites and microsatellite loci of 420 of these specimens from ten sites.ResultsWe detected strong overall genetic differentiation between populations at regional and local scales with both independent marker systems, often even within few kilometers. Interestingly, we observed only a weak correlation of genetic distances with geographic distances or catchment boundaries. Testing for factors explaining the observed population structure revealed, that it was mostly the colonization history, which has influenced the structure rather than any of the chosen environmental factors. Whereas the number of in-stream barriers did not explain population differentiation, the few large water reservoirs in the catchment likely act as dispersal barriers.ConclusionsWe showed that populations of Gammarus fossarum clade 11 are strongly isolated even at local scales in the human-impacted region. The observed genetic structure was best explained by the effects of random genetic drift acting independently on isolated populations after historical colonization events. Genetic drift in isolated populations was probably further enhanced by anthropogenic impacts, as G. fossarum is sensitive to many anthropogenic stressors. These findings highlight the importance of small-scale genetic studies to determine barriers restricting gene flow to prevent further loss of genetic diversity and maintain intact freshwater ecosystems.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-016-0723-z) contains supplementary material, which is available to authorized users.

Mitigating the effects of barriers to freshwater fish migrations: the Australian experience

Declining fish communities characterise global freshwater environments, including those in Australia. Lost river connectivity through water resource development is a key cause of decline, disrupting fish migrations and threatening species productivity, viability and fisheries. Millions of dams, weirs and lesser barriers arising from water resources projects, road and rail transport and hydro-electricity schemes obstruct fish passage in rivers worldwide. Fishways are in place at few sites in Australia and globally relative to the numbers of barriers, and few mitigate the effects of barriers adequately. Most constrain the passage of fish communities and few have performed effectively when assessed against appropriate biological standards. Herein we focus on Australian experience within the global context of obstructed fish migrations, declining fish biodiversity and inadequate fishway performance. We review the migratory characteristics of Australian freshwater fish, identify the effects of different in-stream barriers and other habitat changes on the four classes of migratory behaviour and note how Australia’s highly variable hydrology presents particular challenges in mitigating fish passage barriers. Mitigation options include: basin-scale approaches; improved management of barriers, environmental flows and water quality; barrier removal; and development of improved fishway designs. Mitigation of fish-passage problems can aid in adapting to climate change effects, reversing fisheries declines and rehabilitating fish communities.

A disconnectivity index for improving choices in managing protected areas for rivers

Abstract Ecological processes in freshwater lotic systems are disrupted when upstream–downstream connectivity is broken. Changes in catchment land use, catchment density of small dams, and instream impoundments result in changes to thermal and flow regimes, which in turn affect natural biological turnover patterns and rates, as well as organism exchange and dispersal. This study describes the development of a comprehensive connectivity index for rivers, and how this can be used as a spatial product to prioritize areas of freshwater importance within the province of KwaZulu‐Natal, South Africa. A longitudinal connectivity index (i.e. in‐channel barriers) reflected as a cumulative downstream score, as well as the characterization of these barriers as a spectrum from absolute to partial, was developed for the main rivers in the province of KwaZulu‐Natal, South Africa. This was combined with a lateral connectivity index based on the effects of catchment fragmentation and a density index for small dams. The impacts of instream barriers on flow and water temperature time series were assessed using metrics describing magnitude, frequency, duration and timing of thermal and flow events for time series before and after impoundment. These impacts were spatially mapped using a surrogate function that related reset distance to average discharge, and the assumption that should the unimpounded downstream river length exceed the reset distance, the river species patterns would revert to natural conditions. It is concluded that a multi‐metric connectivity surface should be used as a cost layer for freshwater conservation plans for the province. Assessed in tandem with protected areas, it provides a tool for setting priorities for whole river systems suitable for immediate conservation versus systems that may require rehabilitation. Copyright © 2016 John Wiley &amp; Sons, Ltd.

Native fishes in the Truckee River: Are in-stream structures and patterns of population genetic structure related?

In-stream structures are recognized as significant impediments to movement for freshwater fishes. Apex predators such as salmonids have been the focus of much research on the impacts of such barriers to population dynamics and population viability however much less research has focused on native fishes, where in-stream structures may have a greater impact on long term population viability of these smaller, less mobile species. Patterns of genetic structure on a riverscape can provide information on which structures represent real barriers to movement for fish species and under what specific flow conditions. Here we characterize the impact of 41 dam and diversion structures on movement dynamics under varying flow conditions for a suite of six native fishes found in the Truckee River of California and Nevada. Microsatellite loci were used to estimate total allelic diversity, effective population size and assess genetic population structure. Although there is spatial overlap among species within the river there are clear differences in species distributions within the watershed. Observed population genetic structure was associated with in-stream structures, but only under low flow conditions. High total discharge in 2006 allowed fish to move over potential barriers resulting in no observed population genetic structure for any species in 2007. The efficacy of in-stream structures to impede movement and isolate fish emerged only after multiple years of low flow conditions. Our results suggest that restricted movement of fish species, as a result of in-stream barriers, can be mitigated by flow management. However, as flow dynamics are likely to be altered under global climate change, fragmentation due to barriers could isolate stream fishes into small subpopulations susceptible to both demographic losses and losses of genetic variation.