Initial Template Research Articles

Template Creation for High-Resolution Computed Tomography Scans of the Lung in R Software

Rationale and Objectives.A standard lung template could improve population-level analyses for computed tomography (CT) scans of the lung. We develop a fully-automated pre-processing pipeline for image analysis of the lungs using updated methodologies and R software that results in the creation of a standard lung template. We apply this pipeline to CT scans from a sarcoidosis population, exploring the influence of registration on radiomic analyses.Materials and Methods.Using 65 high-resolution CT scans from healthy adults, we create a standard lung template by segmenting the left and right lungs, non-linearly registering lung masks to an initial template mask, and using an unbiased, iterative procedure to converge to a standard lung shape (Dice similarity coefficient ≥0.99). We compare three-dimensional radiomic features between control and sarcoidosis patients, before and after registration to a study-specific lung template.Results.The final lung template had a right lung volume of 2967 cm3 and left lung volume of 2623 cm3, with a median HU = −862. Registration significantly affected radiomic features, shifting the HU distribution to the left, decreasing variability, and increasing smoothness (p<0.0001). The registration improved detective ability of radiomics; for contrast, autocorrelation, energy and homogeneity, the group effect was significant post-registration (p<0.05), but was not significant pre-registration.Conclusion.The final lung template and software used for its creation are publicly available via the lungct R package to facilitate its use in practice. This study advances lung imaging by developing tools to improve population-level analyses for various lung diseases.

Gelatin-Based Microribbon Hydrogels Guided Mesenchymal Stem Cells to Undergo Endochondral Ossification In Vivo with Bone-Mimicking Mechanical Strength

Most stem cell–based bone tissue engineering strategies to date yield bone through direct bone formation, which mimics intramembranous ossification. However, bone injuries often affect long bones which are formed through endochondral ossification, involving an initial cartilage template formation followed by remodeling to form bones. There remains a critical need to develop scaffolds that enhance stem cell–based bone formation through endochondral ossification with bone-mimicking mechanical strength. Here we evaluated the potential of gelatin-based microribbons (μRBs) as macroporous scaffolds for enhancing human mesenchymal stem cell (MSC)–based bone formation through endochondral ossification. This material platform was compared with conventional gelatin hydrogels (HGs) as controls. MSCs were encapsulated in μRB or HG scaffolds, primed in chondrogenic medium in vitro for 2 weeks, and then implanted in a mouse subcutaneous model with no additional factors. μRB scaffolds supported fast cartilage deposition by MSCs, which was completely remodeled and replaced by mineralized bone. Impressively, the compressive moduli of MSC-seeded μRB scaffolds increased from 10 to 3224 kPa by week 11, a range that mimics native bone. In comparison, while HG supported endochondral ossification, the speed was much slower, with less matrix deposition and only a modest increase in compressive modulus to 269 kPa. These results validate gelatin μRBs as a promising scaffold for repairing long bone defects by guiding robust endochondral ossification. Natural bone development and healing occurs through two distinct pathways: intramembranous ossification and endochondral ossification. Most bone injuries affect long bones, which are formed through endochondral ossification, involving an initial cartilage template formation followed by remodeling to form bones. However, scaffolds that can guide stem cell–based bone formation through endochondral ossification with bone-mimicking mechanical strength remain lacking. Here we report that macroporous gelatin-based microribbons (μRBs) accelerate endochondral ossification by human mesenchymal stem cells (MSCs) in vivo using a mouse subcutaneous model. Impressively, the mechanical properties of MSC-seeded μRB scaffolds increased over 300-fold over 11 weeks to bone-mimicking range, whereas conventional gelatin hydrogel controls reached less than 10% of the bone modulus. These results validate gelatin μRBs as a promising novel scaffold for repairing long bone defects by guiding robust endochondral ossification.

Cellulose-Based Microparticles for Magnetically Controlled Optical Modulation and Sensing.

Responsive materials with birefringent optical properties have been exploited for the manipulation of light in several modern electronic devices. While electrical fields are often utilized to achieve optical modulation, magnetic stimuli may offer an enticing complementary approach for controlling and manipulating light remotely. Here, the synthesis and characterization of magnetically responsive birefringent microparticles with unusual magneto-optical properties are reported. These functional microparticles are prepared via a microfluidic emulsification process, in which water-based droplets are generated in a flow-focusing device and stretched into anisotropic shapes before conversion into particles via photopolymerization. Birefringence properties are achieved by aligning cellulose nanocrystals within the microparticles during droplet stretching, whereas magnetic responsiveness results from the addition of superparamagnetic nanoparticles to the initial droplet template. When suspended in a fluid, the microparticles can be controllably manipulated via an external magnetic field to result in unique magneto-optical coupling effects. Using a remotely actuated magnetic field coupled to a polarized optical microscope, these microparticles can be employed to convert magnetic into optical signals or to estimate the viscosity of the suspending fluid through magnetically driven microrheology.

A simple and tailor‐made fabrication of porous silicon carbide from functionalized kraft pulp paper

Porous silicon carbide (SiC) materials were fabricated using the polymer‐derived ceramics method with kraft pulp papers (KPP) and a commercial polycarbosilane, the allylhydridopolycarbosilane (AHPCS), as starting materials. For this, KPP, propargylated KPP, or phosphorylated KPP were used to be impregnated by the AHPCS, with or without Karstedt catalyst. The pyrolysed materials were characterized at different stages, by using thermogravimetric analysis (TGA) coupled with mass spectrometry, X‐ray diffraction (XRD), and scanning electron microscopy (SEM). Depending on the nature of the initial template, various architectured SiC ceramics were successfully obtained with adjustable porosities. The key role of the previous functionalization of the papers was highlighted in terms of interactions at the interface between the polymer and the lignocellulosic handsheets. It led to either replica or sacrificial template methods. Thus, it was possible to tune the open porosity of the porous carbon and β‐SiC materials between 14.8% and 92.9%, with ceramic yields varying from 12% to 71%.

Discovery of a periosteal stem cell mediating intramembranous bone formation

Bone consists of separate inner endosteal and outer periosteal compartments, each with distinct contributions to bone physiology and each maintaining separate pools of cells owing to physical separation by the bone cortex. The skeletal stem cell that gives rise to endosteal osteoblasts has been extensively studied; however, the identity of periosteal stem cells remains unclear1–5. Here we identify a periosteal stem cell (PSC) that is present in the long bones and calvarium of mice, displays clonal multipotency and self-renewal, and sits at the apex of a differentiation hierarchy. Single-cell and bulk transcriptional profiling show that PSCs display transcriptional signatures that are distinct from those of other skeletal stem cells and mature mesenchymal cells. Whereas other skeletal stem cells form bone via an initial cartilage template using the endochondral pathway4, PSCs form bone via a direct intramembranous route, providing a cellular basis for the divergence between intramembranous versus endochondral developmental pathways. However, there is plasticity in this division, as PSCs acquire endochondral bone formation capacity in response to injury. Genetic blockade of the ability of PSCs to give rise to bone-forming osteoblasts results in selective impairments in cortical bone architecture and defects in fracture healing. A cell analogous to mouse PSCs is present in the human periosteum, raising the possibility that PSCs are attractive targets for drug and cellular therapy for skeletal disorders. The identification of PSCs provides evidence that bone contains multiple pools of stem cells, each with distinct physiologic functions. A periosteal stem cell specialized in intramembranous bone formation has been identified and was found to be essential for normal bone development and fracture healing.

Structurally Defined Ru(II) Metallointercalators for Real-Time Monitoring of DNA Amplification Reactions.

The low cost and convenience of fluorescent DNA binding dyes make them widely used for real-time DNA analysis. Even though several dyes for real-time polymerase chain reaction (PCR) and loop-mediated isothermal amplification (LAMP) assays are commercially available, most of them rely on organic parent molecules with an indefinite chemical structure, making it difficult to predict their behavior in nucleic acid amplification and to get the best performance. Herein, we demonstrate for the first time the use of the structurally defined dipyridophenazine complexes of ruthenium(II) for real-time monitoring of PCR and LAMP. These inorganic metallointercalators exhibit less inhibition on DNA amplification. They can quantify a range of initial template concentrations and provide the product melting curve to differentiate the unspecific amplification and even perform multiplex assays. These ruthenium(II) complexes have the advantages of the defined structure, nontoxicity, good stability, and facile synthesis, and they may act as excellent alternative DNA binding dyes with wide applications in the field of nucleic acid research.

Abstract 2455: Single-color accurate and precise quantification of wild-type versus mutant allele using a novel integrated digital PCR platform

Abstract In this study we present a single-step, one-color quantification of mutant versus wild-type allele using a novel integrated, clinic-optimized digital PCR (dPCR) platform. Allelic variants in DNA or RNA can be distinguished and quantified using Polymerase Chain Reaction (PCR) in concert with intelligent primer and probe design. Most commonly, a researcher or clinician will use unlabeled forward and reverse primers that bind to conserved regions outside of the allelic variation in addition to two differently labeled hydrolysis probes that bind at the region of allelic variation. Here we describe a novel method that leverages the precision of digital PCR (dPCR) technology and requires only one-color fluorescence utilizing probe-free, intercalating dye chemistry. The expense in developing or purchasing a complete PCR assay is normally embedded in the cost of the fluorescently labeled probe. The method described here eliminates the need for the fluorescently labeled probe, thereby reducing chemistry cost. Furthermore, technical complexity is reduced by requiring only one-color fluorescence. In our assay, we use a common unlabeled reverse primer that binds downstream of the allelic variation. Two unlabeled, allele-specific forward primers bind preferentially to either the wild-type or mutant allele at the site of allelic variation. The mutant forward primer contains a non-annealing tail (ie: stretch of the DNA primer that does not anneal to the initial DNA template) that will cause the ultimate mutant PCR product to be longer than the wild-type product. Digital PCR is characterized by dividing up a bulk PCR reaction volume into thousands of fluidically isolated partitions or droplets. In the presence of an intercalating dye, a longer amplicon will result in a higher endpoint fluorescence in that specific dPCR partition. As such, using our novel assay, dPCR partitions containing mutant versus wild-type amplicons can be distinguished by differing levels of end-point partition fluorescence. In this study we used the BRAF gene and the clinically relevant BRAF V600E mutation to benchmark this assay using a novel integrated one-step dPCR platform. This dPCR platform consists of a single, fully-integrated instrument along with a novel micro-injection molded plastic consumable providing a simple, single-step workflow. The instrument is dry and contamination-free, making it an attractive instrument for easy transition to the clinic. Parameters including thermal-cycling time and primer concentration were serially optimized for the novel integrated dPCR platform. This work highlights that we can accurately and precisely quantify samples containing varying ratios of wild-type versus V600E BRAF down to 0.1% mutant/wild-type ratio using one color of fluorescence and a novel integrated single-step walkaway dPCR workflow. Citation Format: Megan E. Dueck, Christina Wood-Bouwens, Andrew Zayac, Robert Lin, Steve Gallagher, Hanlee Ji, Paul Hung. Single-color accurate and precise quantification of wild-type versus mutant allele using a novel integrated digital PCR platform [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 2455.

Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries

BackgroundMassively parallel reporter assays (MPRAs) enable high-throughput functional evaluation of various DNA regulatory elements and their mutant variants. The assays are based on construction of highly diverse plasmid libraries containing two variable fragments, a region of interest (a sequence under study; ROI) and a barcode (BC) used to uniquely tag each ROI, which are separated by a constant spacer sequence. The sequences of BC–ROI combinations present in the libraries may be either known a priori or not. In the latter case, it is necessary to identify these combinations before performing functional experiments. Typically, this is done by PCR amplification of the BC–ROI regions with flanking primers, followed by next-generation sequencing (NGS) of the products. However, chimeric DNA molecules formed on templates with identical spacer fragment during the amplification process may substantially hamper the identification of genuine BC–ROI combinations, and as a result lower the performance of the assays.ResultsTo identify settings that minimize formation of chimeric products we tested a number of PCR amplification parameters, such as conventional and emulsion types of PCR, one- or two-round amplification strategies, amount of DNA template, number of PCR cycles, and the duration of the extension step. Using specific MPRA libraries as templates, we found that the two-round amplification of the BC–ROI regions with a very low initial template amount, an elongated extension step, and a specific number of PCR cycles result in as low as 0.30 and 0.32% of chimeric products for emulsion and conventional PCR approaches, respectively.ConclusionsWe have identified PCR parameters that ensure synthesis of specific (non-chimeric) products from highly diverse MPRA plasmid libraries. In addition, we found that there is a negligible difference in performance of emulsion and conventional PCR approaches performed with the identified settings.

Effective appearance model update strategy in object tracking

Robust and accurate tracking for fast moving object in correlation filter framework is a challenging research problem. The appearance model update strategy impact on performance is usually very significant and hence is worth studying. Unfortunately, very few works focus on this component. This study proposes an adaptive appearance model update method, which utilises both average peak‐to‐correlation energy (APCE) threshold and gradient APCE threshold to measure tracking reliability. When tracking is unreliable, the update rate is modified and the initial template information is used to assist in correcting the model parameters. Different from conventional methods, both APCE threshold and gradient APCE threshold are enhanced by weighting the coefficients. More importantly, the gradient APCE threshold can capture the rapid decline of APCE which implies that the object is in fast motion. Sufficient evaluations on OTB datasets demonstrate that the proposed method can tackle challenging videos well, especially the authors obtain a gain of 4.6% in precision score on the selected 32 videos with fast motion attribute, and a mean gain of 3.0 and 2.2% in precision and success plots on OTB50, compared with the baseline tracker SAMF.

A novel data processing method CyC* for quantitative real time polymerase chain reaction minimizes cumulative error.

Quantitative real-time polymerase chain reaction (qPCR) is routinely conducted for DNA quantitative analysis using the cycle-threshold (Ct) method, which assumes uniform/optimum template amplification. In practice, amplification efficiencies vary from cycle to cycle in a PCR reaction, and often decline as the amplification proceeds, which results in substantial errors in measurement. This study reveals the cumulative error for quantification of initial template amounts, due to the difference between the assumed perfect amplification efficiency and actual one in each amplification cycle. The novel CyC* method involves determination of both the earliest amplification cycle detectable above background (“outlier” C*) and the amplification efficiency over the cycle range from C* to the next two amplification cycles; subsequent analysis allows the calculation of initial template amount with minimal cumulative error. Simulation tests indicated that the CyC* method resulted in significantly less variation in the predicted initial DNA level represented as fluorescence intensity F0 when the outlier cycle C* was advanced to an earlier cycle. Performance comparison revealed that CyC* was better than the majority of 13 established qPCR data analysis methods in terms of bias, linearity, reproducibility, and resolution. Actual PCR test also suggested that relative expression levels of nine genes in tea leaves obtained using CyC* were much closer to the real value than those obtained with the conventional 2-ΔΔCt method. Our data indicated that increasing the input of initial template was effective in advancing emergence of the earliest amplification cycle among the tested variants. A computer program (CyC* method) was compiled to perform the data processing. This novel method can minimize cumulative error over the amplification process, and thus, can improve qPCR analysis.

Multi-atlas active contour segmentation method using template optimization algorithm

BackgroundBrain image segmentation is the basis and key to brain disease diagnosis, treatment planning and tissue 3D reconstruction. The accuracy of segmentation directly affects the therapeutic effect. Manual segmentation of these images is time-consuming and subjective. Therefore, it is important to research semi-automatic and automatic image segmentation methods. In this paper, we propose a semi-automatic image segmentation method combined with a multi-atlas registration method and an active contour model (ACM).MethodWe propose a multi-atlas active contour segmentation method using a template optimization algorithm. First, a multi-atlas registration method is used to obtain the prior shape information of the target tissue, and then a label fusion algorithm is used to generate the initial template. Second, a template optimization algorithm is used to reduce the multi-atlas registration errors and generate the initial active contour (IAC). Finally, a ACM is used to segment the target tissue.ResultsThe proposed method was applied to the challenging publicly available MR datasets IBSR and MRBrainS13. In the MRBrainS13 datasets, we obtained an average thalamus Dice similarity coefficient of 0.927 ± 0.014 and an average Hausdorff distance (HD) of 2.92 ± 0.53. In the IBSR datasets, we obtained a white matter (WM) average Dice similarity coefficient of 0.827 ± 0.04 and a gray gray matter (GM) average Dice similarity coefficient of 0.853 ± 0.03.ConclusionIn this paper, we propose a semi-automatic brain image segmentation method. The main contributions of this paper are as follows: 1) Our method uses a multi-atlas registration method based on affine transformation, which effectively reduces the multi-atlas registration time compared to the complex nonlinear registration method. The average registration time of each target image in the IBSR datasets is 255 s, and the average registration time of each target image in the MRBrainS13 datasets is 409 s. 2) We used a template optimization algorithm to improve registration error and generate a continuous IAC. 3) Finally, we used a ACM to segment the target tissue and obtain a smooth continuous target contour.

Tuning the Optical Properties of Hyperbolic Metamaterials by Controlling the Volume Fraction of Metallic Nanorods.

Porous films of anodic aluminum oxide are widely used as templates for the electrochemical preparation of functional nanocomposites containing ordered arrays of anisotropic nanostructures. In these structures, the volume fraction of the inclusion phase, which strongly determines the functional properties of the nanocomposite, is equal to the porosity of the initial template. For the range of systems, the most pronounced effects and the best functional properties are expected when the volume fraction of metal is less than 10%, whereas the porosity of anodic aluminum oxide typically exceeds this value. In the present work, the possibility of the application of anodic aluminum oxide for obtaining hyperbolic metamaterials in the form of nanocomposites with the metal volume fraction smaller than the template porosity is demonstrated for the first time. A decrease in the fraction of the pores accessible for electrodeposition is achieved by controlled blocking of the portion of pores during anodization when the template is formed. The effectiveness of the proposed approach has been shown in the example of obtaining nanocomposites containing Au nanorods arrays. The possibility for the control over the position of the resonance absorption band corresponding to the excitation of collective longitudinal oscillations of the electron gas in the nanorods in a wide range of wavelengths by controlled decreasing of the metal volume fraction, is shown.

A Simple Guidance Template-Based Defect Detection Method for Strip Steel Surfaces

Automatic defect detection on strip steel surfaces is a challenging task in computer vision, owing to miscellaneous patterns of defects, disturbance of pseudodefects, and random arrangement of gray-level in background. In this paper, a novel template establishment is presented. Further, a simple guidance template-based algorithm for strip steel surface defect detection is proposed. First, a large number of defect-free images are collected to obtain the statistical characteristic of normal textures. Second, for each given test image, the initial template is built according to the statistical characteristic and the size of test image. Then, a sorting operation is applied to the given test image. Further, by updating the initial template, a unique guidance template is generated based on specific intensity distribution of the sorted test image. So far, the background of each test image is approximately reconstructed in the guidance template. Finally, based on pixel-wise detection, the defects can be located accurately by subtraction operation between the guidance template and sorted test image, reverse sorting operation, and adaptive threshold determination. Experimental results show that the proposed method is both efficient and effective. It achieves a better average detection rate of 96.2% on a data set including 1500 test images.

Detection of antisense protein (ASP) RNA transcripts in individuals infected with human immunodeficiency virus type 1 (HIV-1).

The detection of antisense RNA is hampered by reverse transcription (RT) non-specific priming, due to the ability of RNA secondary structures to prime RT in the absence of specific primers. The detection of antisense RNA by conventional RT-PCR does not allow assessment of the polarity of the initial RNA template, causing the amplification of non-specific cDNAs. In this study we have developed a modified protocol for the detection of human immunodeficiency virus type 1 (HIV-1) antisense protein (ASP) RNA. Using this approach, we have identified ASP transcripts in CD4+ T cells isolated from five HIV-infected individuals, either untreated or under suppressive therapy. We show that ASP RNA can be detected in stimulated CD4+ T cells from both groups of patients, but not in unstimulated cells. We also show that in untreated patients, the patterns of expression of ASP and env are very similar, with the levels of ASP RNA being markedly lower than those of env. Treatment of cells from one viraemic patient with α-amanitin greatly reduces the rate of ASP RNA synthesis, suggesting that it is associated with RNA polymerase II, the central enzyme in the transcription of protein-coding genes. Our data represent the first nucleotide sequences obtained in patients for ASP, demonstrating that its transcription indeed occurs in those HIV-1 lineages in which the ASP open reading frame is present.

Fish-derived antimicrobial peptides: Activity of a chionodracine mutant against bacterial models and human bacterial pathogens

The increasing resistance to conventional antibiotics is an urgent problem that can be addressed by the discovery of new antimicrobial drugs such as antimicrobial peptides (AMPs). AMPs are components of innate immune system of eukaryotes and are not prone to the conventional mechanisms that are responsible of drug resistance. Fish are an important source of AMPs and, recently, we have isolated and characterized a new 22 amino acid residues peptide, the chionodracine (Cnd), from the Antarctic icefish Chionodraco hamatus. In this paper we focused on a new Cnd-derived mutant peptide, namely Cnd-m3a, designed to improve the selectivity against prokaryotic cells and the antimicrobial activity against human pathogens of the initial Cnd template. Cnd-m3a was used for immunization of rabbits, which gave rise to a polyclonal antibody able to detect the peptide. The interaction kinetic of Cnd-m3a with the Antarctic bacterium Psychrobacter sp. (TAD1) was imaged using a transmission electron microscopy (TEM) immunogold method. Initially the peptide was associated with the plasma membrane, but after 180 min of incubation, it was found in the cytoplasm interacting with a DNA target inside the bacterial cells. Using fluorescent probes we showed that the newly designed mutant can create pores in the outer membrane of the bacteria E. coli and Psychrobacter sp. (TAD1), confirming the results of TEM analysis. Moreover, in vitro assays demonstrated that Cnd-m3a is able to bind lipid vesicles of different compositions with a preference toward negatively charged ones, which mimics the prokaryotic cell. The Cnd-m3a peptide showed quite low hemolytic activity and weak cytotoxic effect against human primary and tumor cell lines, but high antimicrobial activity against selected Gram – human pathogens. These results highlighted the high potential of the Cnd-m3a peptide as a starting point for developing a new human therapeutic agent.

Accuracy analysis and clinical application of the progressive navigation template system to assist atlas-axial pedicle screw placement

To investigate the accuracy of progressive three-dimensional navigation template system (abbreviated as progressive template) to assist atlas-axial pedicle screw placement. The clinical data of 33 patients with atlas-axial posterior internal fixation surgery between May 2015 and May 2017 were retrospectively analyzed. According to the different methods of auxiliary screw placement, the patients were divided into trial group (19 cases, screw placement assisted by progressive template) and control group (14 cases, screw placement assisted by single navigation template system, abbreviated as initial navigation template). There was no significant difference in gender, age, cause of injury, damage segments, damage types, and preoperative Frankel classification between the two groups ( P>0.05). The operation time and intraoperative blood loss of the two groups were compared. The safety of screw placement was evaluated on postoperative CT by using the method from Kawaguchi et al, the deviation of screw insertion point were calculated, the angular deviation of the nailing on coordinate systems XOZ, XOY, YOZ were calculated according to Peng's method. All patients completed the operation successfully; the operation time and intraoperative blood loss in the trial group were significantly less than those in the control group ( t=-2.360, P=0.022; t=-3.006, P=0.004). All patients were followed up 12-40 months (mean, 25.3 months). There was no significant vascular injury or nerve injury aggravation. Postoperative immediate X-ray film and CT showed the dislocation was corrected. Postoperative immediate CT showed that all 76 screws were of grade 0 in the trial group, and the safety of screw placement was 100%; 51 screws were of grade 0, 3 of gradeⅠ, and 2 of gradeⅡ in the control group, and the safety of screw placement was 91.1%; there was significant difference in safety of screw placement between the two groups ( χ2=7.050, P=0.030). The screw insertion point deviation and angular deviation of the nailing on XOY and YOZ planes in the trial group were significantly less than those in the control group ( P<0.05). There was no significant difference in angular deviation of the nailing on XOZ between the two groups ( t=1.060, P=0.290). Compared with the initial navigation template, the progressive navigation template assisting atlas-axial pedicle screw placement to treat atlas-axial fracture with dislocation, can reduce operation time and intraoperative blood loss, improve the safety of screw placement, and match the preoperative design more accurately.

Perforated alumina templates as a tool for engineering of CoPd film magnetic properties

Abstract The patterning of the CoPd films was performed by the deposition of the Co/Pd multilayers on the nanoperforated templates of anodic aluminum oxide (AAO). We observed that the morphology of aluminum oxide is represented by the hexagonal packed hemispherical wells with a pore in the middle. The morphology of the patterned films follows the features of the initial templates; the magnetic material is deposited mainly in the regions between the pores and on their perimeter. The Co atoms diffuse into the Pd layer already during the film deposition, and discontinuous interfaces of Co and Pd are formed leading to the creation of the CoPd solid solution. The out-of-plane hysteresis loops of the nanoporous films exhibited high values of the coercive field (HC = 2.0–3.6 kOe) and squareness ratio (Mr/MS = 0.7–0.8). This indicates that the nanoporous films retain the perpendicular magnetic anisotropy observed for continuous film. Deteriorated values of effective anisotropy constant Keff for the porous films with respect to the continuous film are explained by the complex morphology of the nanoporous films, which leads to partial deviation of magnetic moments from the direction normal to the sample plane. On the other hand the increase of the values of the coercive field HC of the nanoporous films in comparison to the continuous films is related to the pinning of the magnetic moments on the nanopores. We observed the transition of the magnetization reversal mechanism from the domain wall motion observed for the continuous film, to coherent rotation mode for the nanoporous films. We show that this approach allows us to tune the coercive field HC and the effective magnetic anisotropy constant Keff of the CoPd film by engineering the pore size of the templates.

An Amphiphilic Mesoporous Polymer Comprising a “built‐in” Imidazolium Ionic Liquid via Nanocasting Method as a Novel Catalyst Support with Combined Prospects

AbstractAn imidazolium based ionic liquid bearing triethylene glycol (TEG) tag was employed as a functional monomer together with divinylbenzene to prepare a novel hydrophilic mesoporous polymer containing ionic liquid functionalities via nanocasting method using SBA‐15 as a hard template. The material was characterized using transmission electron microscopy (TEM), N2 sorption analysis, thermo‐gravimetric analysis (TGA), Fourier‐transform infrared spectroscopy (FT‐IR), elemental analysis (CHN), solid‐state NMR spectroscopy and contact angle measurement. It was found that the hydrophobic/hydrophilic properties of initial template, stepwise addition of monomers and initiator as well as amount of carrier solvent are of the important parameters in preparation of the polymer with uniform pore structure. Benefited from the combined properties such as incorporation of ionic liquid within the pore system of a flexible organic matrix together with its hydrophilic character, the material was found as an appropriate support to generate highly dispersed and very small size of Pd nanoparticles inside the pores. The prepared catalyst in this way, demonstrated outstanding activity, recyclability and high durability in the Suzuki cross‐coupling reaction of varied aryl halides with boronic acids in water as a green reaction medium. The beneficial role of imidazolium ionic liquid in the formation of small and highly active Pd nanoparticles was confirmed with comparative experiments.

Visual Tracking via Dynamic Memory Networks.

Template-matching methods for visual tracking have gained popularity recently due to their good performance and fast speed. However, they lack effective ways to adapt to changes in the target object's appearance, making their tracking accuracy still far from state-of-the-art. In this paper, we propose a dynamic memory network to adapt the template to the target's appearance variations during tracking. The reading and writing process of the external memory is controlled by an LSTM network with the search feature map as input. A spatial attention mechanism is applied to concentrate the LSTM input on the potential target as the location of the target is at first unknown. To prevent aggressive model adaptivity, we apply gated residual template learning to control the amount of retrieved memory that is used to combine with the initial template. In order to alleviate the drift problem, we also design a "negative" memory unit that stores templates for distractors, which are used to cancel out wrong responses from the object template. To further boost the tracking performance, an auxiliary classification loss is added after the feature extractor part. Unlike tracking-by-detection methods where the object's information is maintained by the weight parameters of neural networks, which requires expensive online fine-tuning to be adaptable, our tracker runs completely feed-forward and adapts to the target's appearance changes by updating the external memory. Moreover, the capacity of our model is not determined by the network size as with other trackers - the capacity can be easily enlarged as the memory requirements of a task increase, which is favorable for memorizing long-term object information. Extensive experiments on the OTB and VOT datasets demonstrate that our trackers perform favorably against state-of-the-art tracking methods while retaining real-time speed.

TEXTBOOKS AND TEMPLATES IN BYZANTINE STUDIES

Though the modern study of Byzantine civilisation and history dates back to the late 19 th century, the establishment of a definitive introductory textbook in the English language would be a slow process that would not culminate until the 1950’s. Due in part to the enormous chronological termini of Byzantine History, and major primary sources in at least five different languages, the number of introductory works is much smaller than in other historical disciplines. As a result, Byzantine history textbooks are still very closely welded to two initial templates established in 1892 and 1925. This article will briefly examine the initial templates laid down by the early authors of Byzantine textbooks. Following the examination of these templates, we will move chronologically through some of the main publications of the long 20 th century, concluding in the present day, gauging the impact of these works through scholarly reaction and publication information.