In this study, a new, economical and green method was reported for synthesizing Fe3O4@CuO nanoparticles without adding any surfactants using Euphorbia polygonifolia extract as a renewable, mild and safe reducing agent and effective stabilizer. The green synthesized NPs were analyzed by various methods such as XRD, FESEM, FT‐IR, EDS, VSM, UV–visible, DRS, BET and TGA‐DTA. Based on the BET analysis, the Fe3O4@CuO NP had a surface area of 69.20 m2/g. The FTIR analysis verified the existence of different functional groups of phytochemicals from Euphorbia polygonifolia extract which were accountable for the NPs formation. The catalytic performance of the catalyst for the degradation of metronidazole, ciprofloxacin and cephalexin antibiotics was examined in aqueous mediums at room temperature. The results showed an extraordinary catalytic performance, easy reusability and long‐term stability of the composite for reducing antibiotic pollution. In this process, the effects of environmental conditions such as initial pH of the environment, initial concentration of antibiotics, the concentration of modified photocatalyst and reaction time were studied. According to the results, at the optimal conditions, the highest removal efficiency for metronidazole, ciprofloxacin and cephalexin antibiotics using Fe3O4@CuO nanoparticles, were 89%, 94%, and 96%, respectively. Also, it was observed that even after recycling, the NPs presents good nanocatalytic stability for the degradation of antibiotics. Using the NPs for five cycles did not significantly alter the photocatalyst efficiency, showing that the photocatalytic stability of the NPs was excellent.