Infrared-ultraviolet Double Resonance Research Articles

Theoretical and experimental study of IR spectra of large phenol-acetylene clusters, Ph(Ac)n for 8 ≤ n ≤ 12

This work reports a combined theoretical and experimental study on large phenol-acetylene clusters, Ph(Ac)n, 8 ​≤ ​n ​≤ ​12, extending our earlier work on the smaller clusters [Singh, G.; Nandi, A.; Gadre, S. R.; Chiba, T.; Fujii, A. J. Chem. Phys.2017, 146, 154303]. Several trial cluster geometries are generated using the molecular electrostatic potential (MESP) for placing additional acetylene moieties, followed by geometry optimization at B97D/aug-cc-pVDZ level theory. The infrared spectra of energetically low-lying (within 0.5 ​mH window) isomers of the clusters are calculated and averaged. The O–H stretching band shows two peaks due to the presence of energetically close isomers differing in the arrangement of acetylenes around the O–H group. The acetylenic C–H stretching band appears around 3260 ​cm−1. The C–H band shows a red shift of about 3 ​cm−1 on going from n ​= ​8 to 12. Moderately size-selected IR spectra of Ph(Ac)n (n ​= ​~10 and ~13) prepared by a supersonic jet expansion are measured for the acetylenic C–H region by infrared-ultraviolet double resonance spectroscopy combined with time-of-flight mass spectrometry. The observed spectral features are in agreement with the trends of the frequency shift and asymmetric line shape of the C–H stretch band predicted by the theoretical calculations.

Sub-ppb Measurement of a Fundamental Band Rovibrational Transition in HD.

We report a direct measurement of the 1-0 R(0) vibrational transition frequency in ground-state hydrogen deuteride (HD) using infrared-ultraviolet double resonance spectroscopy in a molecular beam. Ground-state molecules are vibrationally excited using a frequency comb referenced continuous-wave infrared laser, and the excited molecules are detected via state-selective ionization with a pulsed ultraviolet laser. We determine an absolute transition frequency of 111 448 815 477(13)kHz. The 0.12 parts-per-billion (ppb) uncertainty is limited primarily by the residual first-order Doppler shift.

A combined theoretical and experimental study of phenol-(acetylene)n (n ≤ 7) clusters.

Structures and vibrational spectra of phenol-(acetylene)n (Ph(Ac)n) clusters are studied by a combination of theoretical calculations and infrared (IR) spectroscopy. The molecular electrostatic potential features are utilized for generating trial geometries of the medium-sized Ph(Ac)n (n = 1, 2, 4, 6, and 7) clusters. These initial geometries are subjected to geometry optimization within the second-order Møller-Plesset (MP2) theory, employing correlation consistent aug-cc-pVDZ (aVDZ) basis set. Minimal nature of the reported structures is confirmed by doing vibrational frequency run at MP2/aVDZ level of theory using full calculations for n = 1 and 2 and employing grafting based molecular tailoring approach for the n = 4, 6, and 7. Several isomers for n ≥ 4 are found to lie in an energy window of 1 kcal mol-1 of each other. Considering the formidability of MP2 level investigation for the large number of isomers for n = 6 and 7, B97-D level theory is used for studying their energetics and IR spectra. It is seen that the number of energetically close isomers increases with increasing n. Moderately size-selected IR spectra of Ph(Ac)n (n = 4 and 7), prepared by a supersonic jet expansion, are measured for the acetylenic C-H and phenolic O-H stretch regions by infrared-ultraviolet (IR-UV) double resonance spectroscopy combined with time-of-flight mass spectrometry. Asymmetric line shape of the C-H stretch band and remarkable line broadening and weakening of the O-H stretch band are noteworthy features of the observed spectra. These findings of the experimental spectra are explained by the theoretical studies. The averaging of the vibrational spectrum of low-lying isomers of the Ph(Ac)n clusters lying in a narrow energy range is found to be responsible for the broadening and weakening of the O-H band.

Experimental observation of structures with subtle balance between strong hydrogen bond and weak n → π(*) interaction: Gas phase laser spectroscopy of 7-azaindole⋯fluorosubstituted pyridines.

In this study, interplay between a strong hydrogen bond and a very weak n → π(*) interaction has been probed through experiment for the first time. We have used resonant 2-photon ionization, Infrared-ultraviolet double resonance spectroscopy, and quantum chemistry calculation to determine the structures of 7-azaindole⋯2,6-difluoropyridine and 7-azaindole⋯2,3,5,6-tetrafluororpyridine complexes, which are stabilized by both hydrogen bonding and n → π(*) interaction. The structures of the complexes studied in the present work have been compared with the double hydrogen bonded (N-H⋯N and C-H⋯N) planar structure of 7-azaindole⋯2-fluoropyridine. It has been found that the strength of the N-H⋯N hydrogen bond in the 7-azaindole⋯2,6-substituted fluoropyridines is affected due to several factors. The main reason for huge reduction in the strength of this N-H⋯N hydrogen bond in these complexes is due to loss of the C-H⋯N hydrogen bond, through substitution of fluorine atoms in 2 and 6 positions, which induces major structural changes by bending the hydrogen bond and introducing the n → π(*) interaction. Effect of fluorination as well as presence of the n → π(*) interaction in these complexes also contributes to the reduction of the strength of the N-H⋯N interaction. Although it is difficult to quantify the role of the n → π(*) interaction to affect the strength of the hydrogen bond, observation of the structures, where a strong hydrogen bond and a weak n → π(*) interaction co-exist, is confirmed.

Isomer-Specific Spectroscopy of Benzene–(H2O)n, n = 6,7: Benzene’s Role in Reshaping Water’s Three-Dimensional Networks

The water hexamer and heptamer are the smallest sized water clusters that support three-dimensional hydrogen-bonded networks, with several competing structures that could be altered by interactions with a solute. Using infrared-ultraviolet double resonance spectroscopy, we record isomer-specific OH stretch infrared spectra of gas-phase benzene-(H2O)(6,7) clusters that demonstrate benzene's surprising role in reshaping (H2O)(6,7). The single observed isomer of benzene-(H2O)6 incorporates an inverted book structure rather than the cage or prism. The main conformer of benzene-(H2O)7 is an inserted-cubic structure in which benzene replaces one water molecule in the S4-symmetry cube of the water octamer, inserting itself into the water cluster by engaging as a π H-bond acceptor with one water and via C-H···O donor interactions with two others. The corresponding D(2d)-symmetry inserted-cube structure is not observed, consistent with the calculated energetic preference for the S4 over the D(2d) inserted cube. A reduced-dimension model that incorporates stretch-bend Fermi resonance accounts for the spectra in detail and sheds light on the hydrogen-bonding networks themselves and on the perturbations imposed on them by benzene.

Exploring the Mechanism of IR–UV Double‐Resonance for Quantitative Spectroscopy of Protonated Polypeptides and Proteins

Spectroscopic fingerprint: Infrared–ultraviolet double resonance photodissociation is used for conformational assignment of the electronic spectra of a cold protonated decapeptide (see picture). A mechanism of the IR–UV depletion spectroscopy is proposed and a procedure of using it for measurements of absolute absorption cross-sections of vibrational transitions is elaborated.

Laser Spectroscopic Study of Cold Host–Guest Complexes of Crown Ethers in the Gas Phase

A laser spectroscopic study on the structure and dynamics of cold host-guest inclusion complexes of crown ethers (CEs) with various neutral and ionic species in the gas phase is presented. The complexes with neutral guest species are formed by using supersonic free jets, and those with ionic species are generated with electrospray ionization combined with a cold 22-pole ion trap. For CEs, various sizes of 3n-crown-n ethers (n=4, 5, 6, and 8) and their benzene-substituted species are used. For the guest species, water, methanol, ammonia, acetylene, and phenol are employed as neutral guest species, and for charged guest species, alkali metal cations are chosen. The electronic and vibrational spectra of the complexes are measured by using various laser spectroscopic methods; electronic spectra for the neutral complexes are measured by laser-induced fluorescence. Discrimination of different species such as conformers is performed by ultraviolet-ultraviolet hole-burning spectroscopy. The vibrational spectra of selected species are observed by infrared-ultraviolet double-resonance (IR-UV DR) spectroscopy. For the ionic complexes, ultraviolet photodissociation and IR-UV DR spectroscopy are applied. The complex structures are determined by comparing the observed spectra with those of possible structures obtained by density functional theory calculations. How the host CEs change their conformation or which conformer prefers to form unique inclusion complexes are discussed. These results reveal the key interactions for forming special complexes leading to molecular recognition.

Communication: Frequency shifts of an intramolecular hydrogen bond as a measure of intermolecular hydrogen bond strengths

Infrared-ultraviolet double resonance spectroscopy has been applied to study the infrared spectra of the supersonically cooled gas phase complexes of formic acid, acetic acid, propionic acid, formamide, and water with 9-hydroxy-9-fluorenecarboxylic acid (9HFCA), an analog of glycolic acid. In these complexes each binding partner to 9HFCA can function as both proton donor and acceptor. Relative to its frequency in free 9HFCA, the 9-hydroxy (9OH) stretch is blue shifted in complexes with formic, acetic, and propionic acids, but is red shifted in the complexes with formamide and water. Density functional calculations on complexes of 9HFCA to a variety of H bonding partners with differing proton donor and acceptor abilities reveal that the quantitative frequency shift of the 9OH can be attributed to the balance struck between two competing intermolecular H bonds. More extensive calculations on complexes of glycolic acid show excellent consistency with the experimental frequency shifts.

Laser Spectroscopic Study of β-Estradiol and Its Monohydrated Clusters in a Supersonic Jet

The structures of 17β-estradiol (estradiol) and its 1:1 cluster with water have been investigated in supersonic jets. The S(1)-S(0) electronic spectrum of estradiol monomer shows four strong sharp bands in the 35050-35200 cm(-1) region. Ultraviolet-ultraviolet hole-burning (UV-UV HB) and infrared-ultraviolet double-resonance (IR-UV DR) spectra of these bands indicate that they are due to four different conformers of estradiol originating from the different orientation of the OH groups in the A- and D-rings. The addition of water vapor to the sample gas generates four new bands in the 34700-34800 cm(-1) region, which are assigned to the estradiol-H(2)O 1:1 cluster with the A-ring (phenyl ring) OH acting as a hydrogen(H)-bond donor. In addition, we found very weak bands near the origin bands of bare estradiol upon the addition of water vapor. These bands are assigned to the isomers of estradiol-H(2)O 1:1 cluster having an H-bond at the D-ring OH. We determine the conformation of bare estradiol and the structures of its monohydrated clusters with the aid of density functional theory calculation and discuss the relationship between the stability of hydrated clusters and the conformation of estradiol.

Experimental characterization of the CN X 2Σ+ + Ar and H2 potentials via infrared-ultraviolet double resonance spectroscopy

The hindered internal rotor states (n(K) = 0(0), 1(1), and 1(0)) of the CN-Ar complex with two quanta of CN stretch (v(CN) = 2), along with its ground state (v(CN) = 0), have been characterized by IR-UV double resonance and UV spectroscopy. Analysis of rotationally structured bands enable n(K) assignments and reveal perturbations due to Coriolis coupling between two closely spaced hindered rotor states, n(K) = 1(1) and 1(0). A deperturbation analysis is carried out to derive accurate rotational constants and their associated CN center-of-mass to Ar bond lengths as well as the magnitude of the coupling. The energetic ordering and spacings of the CN-Ar hindered rotor states provide a direct experimental probe of the angular dependence of the CN X (2)Σ(+) + Ar potential and permit radially averaged anisotropy parameters (V(10) = 5.2 cm(-1) and V(20) = 3.2 cm(-1)) to be determined. This analysis indicates a relatively flat potential about a linear N≡C-Ar configuration with a barrier to CN internal rotation of only ~12 cm(-1). The angular potentials determined from experiment and ab initio theory are in good accord, although theory predicts a higher barrier to CN internal rotation. A similar approach yields the infrared spectrum of H(2)-CN in the CN overtone region, which exhibits a rotationally resolved Σ ← Σ parallel band that is consistent with theoretical predictions for ortho-H(2)-CN.

包接錯体のレーザー分光

Laser spectroscopic study has been carried out for host-guest encapsulation complexes formed in supersonic jets and electrospray ionization cold 22 ion trap. The examined hosts include benzene-substituted 18-crown-6-ethers and calix[4]arene, and for the guest species rare gas atoms, neutral molecules and alkali metal cations have been chosen. Various laser spectroscopic methods are applied: for the neutral complexes the electronic spectra are observed by laser-induced fluorescence (LIF), mass-selected resonance enhanced multiphoton ionization (REMPI) and ultraviolet-ultraviolet hole-burning (UV-UV HB) spectroscopy. The vibrational spectra are observed by infrared-ultraviolet double resonance (IR-UV DR) and fragment detected infrared photodissociation (IRPD) spectroscopy. For the ionic complexes, ultraviolet photodissociation (UVPD) and IR-UV DR spectroscopy has been applied. The obtained results are analyzed by density functional theory and first principles electronic structure calculations. We discuss how the host molecule changes its conformation or which conformer is preferred for forming stable encapsulation complex as well as the key interactions, leading to the molecular recognition.

Structure of the Indole−Benzene Dimer Revisited

The structure of the indole-benzene dimer has been investigated using experimental techniques, namely, UV spectroscopy and infrared-ultraviolet (IR/UV) double resonance spectroscopy, combined with quantum chemical calculations such as MP2 and dispersion corrected DFT methods. The red shift of the indole N-H stretch frequency in the dimer provides direct evidence that the experimentally observed indole-benzene dimer is an N-H···π bound hydrogen bonded complex. Theoretical investigations suggest that the potential energy surface (PES) of the complex is rather flat along the coordinate describing the tilt angle between the molecular planes of indole and benzene, with several minima of similar energies, namely, parallel displaced (PD), right-angle T-shaped (T), and other intermediate structures which can be categorized as tilted T-shaped (T') and tilted parallel displaced (PD') structures. Three different computational methods, namely, RI-MP2, RI-B97-D, and PBE1-DCP, are used to arrive at a new structural assignment after assessing their performance in predicting the structure of the pyrrole dimer, for which accurate experimental data are available. By comparing the computed IR spectra of PD, T, and T'/PD' structures with the experimental IR spectrum, the tilted T-shaped (T') structure was assigned to the indole-benzene dimer. The empirically dispersion-corrected functionals (RI-B97-D and PBE1-DCP) correctly reproduce the experimental IR spectrum whereas the popular post-Hartree-Fock, MP2 method gives disappointing results. These results are also in agreement with the experimental dissociation energy (D(0)) reported in the literature. The N-H stretch frequency of the indole-benzene dimer has been found to be a more pertinent parameter for the structural assignment than the dissociation energy (D(0)).

Carbohydrate hydration: heavy water complexes of α and β anomers of glucose, galactose, fucose and xylose

The singly and doubly hydrated complexes of the α and β anomers of a systematically varied set of monosaccharides, O-phenyl D-gluco-, D-galacto-, L-fuco- and D-xylopyranoside, have been generated in a cold molecular beam and probed through infrared-ultraviolet double resonance ion-dip (IRID) spectroscopy coupled with quantum mechanical calculations. A new 'twist' has been introduced by isotopic substitution, replacing H(2)O by D(2)O to separate the carbohydrate (OH) and hydrate (OD) vibrational signatures and also to relieve spectral congestion. The new spectroscopic and computational results have exposed subtle aspects of the intermolecular interactions which influence the finer details of their preferred structures, including the competing controls exerted by co-operative hydrogen bonding, bi-furcated and OH-π hydrogen bonding, stereoelectronic changes associated with the anomeric effect, and dispersion interactions. They also reassert the operation of general 'working rules' governing conformational change and regioselectivity in both singly and doubly hydrated monosaccharides.

Structures and Encapsulation Motifs of Functional Molecules Probed by Laser Spectroscopic and Theoretical Methods

We report laser spectroscopic and computational studies of host/guest hydration interactions between functional molecules (hosts) and water (guest) in supersonic jets. The examined hosts include dibenzo-18-crown-6-ether (DB18C6), benzo-18-crown-6-ether (B18C6) and calix[4]arene (C4A). The gaseous complexes between the functional molecular hosts and water are generated under jet-cooled conditions. Various laser spectroscopic methods are applied for these species: the electronic spectra are observed by laser-induced fluorescence (LIF), mass-selected resonance enhanced multiphoton ionization (REMPI) and ultraviolet-ultraviolet hole-burning (UV-UV HB) spectroscopy, whereas the vibrational spectra for each individual species are observed by infrared-ultraviolet double resonance (IR-UV DR) spectroscopy. The obained results are analyzed by first principles electronic structure calculations. We discuss the conformations of the host molecules, the structures of the complexes, and key interactions forming the specific complexes.

Infrared Spectroscopy of Phenol−(H2O)n>10: Structural Strains in Hydrogen Bond Networks of Neutral Water Clusters

To investigate hydrogen bond network structures of tens of water molecules, we report infrared spectra of moderately size (n)-selected phenol-(H2O)n (approximately 10 < or = n < or = approximately 50), which have essentially the same network structures as (H2O)(n+1). The phenyl group in phenol-(H2O)(n) allows us to apply photoionization-based size selection and infrared-ultraviolet double resonance spectroscopy. The spectra show a clear low-frequency shift of the free OH stretching band with increasing n. Detailed analyses with density functional theory calculations indicate that this shift is accounted for by the hydrogen bond network development from highly strained ones in the small (n < approximately 10) clusters to more relaxed ones in the larger clusters, in addition to the cooperativity of hydrogen bonds.

Structure of the Phenylacetylene−Water Complex as Revealed by Infrared-Ultraviolet Double Resonance Spectroscopy

The structure of the phenylacetylene-water complex has been elucidated based on spectral shifts in electronic and vibrational transitions. Phenylacetylene forms a cyclic complex with water incorporating C-H...O and O-H...pi hydrogen bonds, which is different from both the benzene-water and acetylene-water complexes, even though phenylacetylene combines the features of both benzene and acetylene. Formation of such a complex can be rationalized on the basis of cooperativity between the two sets of hydrogen bonds.

Rovibrational Energy Transfer in the 4νCH Manifold of Acetylene, Viewed by IR−UV Double Resonance Spectroscopy. 5. Detailed Kinetic Model

Time-resolved infrared-ultraviolet double resonance (IR-UV DR) spectroscopy provides a distinctive way to examine collision-induced state-to-state energy transfer between rotational J-levels in vibrational manifolds of small polyatomic molecules, such as acetylene (C2H2) in its electronic ground state X. We consider the 4nuCH rovibrational manifold of C2H2 at approximately 12,700 cm(-1), where the principal source of IR-brightness is the (nu1+3nu3) or (1 0 3 0 0)0 Sigma+u vibrational combination level. In this highly congested manifold, anharmonic, l-resonance, and Coriolis couplings affect the J-levels of interest, implicating them in a complicated variety of intramolecular dynamics. Previous papers of this series have reported several seemingly anomalous J-resolved phenomena induced by collisions in C2H2 gas at room temperature with pressures and IR-UV pump-probe delay intervals corresponding to remarkably high Lennard-Jones collisional efficiencies P: odd-DeltaJ rotational energy transfer (10(-3)<P<0.1), in addition to regular even-DeltaJ transfer (P approximately 0.3 for typical |DeltaJ|=2 transfer); particular rovibrational "gateway" channels, such as via (nu1+3nu3) Sigma+u J=12 (with P as high as approximately 0.1); an apparently ubiquitous collision-induced quasi-continuous background (10(-3)<P<0.1) that accounts for much of the observed collision-induced odd-DeltaJ satellite structure. These phenomena have been characterized by means of systematic IR-UV DR kinetic measurements, with IR pump and UV probe wavelengths and sample pressure fixed while the IR-UV pump-probe delay is scanned. In this paper, a detailed master-equation model is constructed to provide a satisfactory phenomenological fit to the IR-UV DR kinetic data, thereby offering mechanistic insight. This model includes collision-induced energy transfer between discrete rovibrational levels in an IR-bright manifold V and a quasi-continuous bath B, mediated by a J-specific gateway manifold G.

Conformation-specific infrared and ultraviolet spectroscopy of tyrosine-based protonated dipeptides

We present the spectroscopy and photofragmentation dynamics of two isomeric protonated dipeptides, H+AlaTyr and H+TyrAla, in a cold ion trap. By a combination of infrared-ultraviolet double resonance experiments and density functional theory calculations, we establish the conformations present at low temperature. Interaction of the charge at the N-terminus with the carbonyl group and the tyrosine pi-cloud seems to be critical in stabilizing the low-energy conformations. H+AlaTyr has the flexibility to allow a stronger interaction between the charge and the aromatic ring than in H+TyrAla, and this interaction may be responsible for many of the differences we observe in the former: a significant redshift in the ultraviolet spectrum, a much larger photofragmentation yield, fewer stable conformations, and the absence of fragmentation in excited electronic states.

Rovibrational Energy Transfer in the 4νCHManifold of Acetylene, Viewed by IR−UV Double-Resonance Spectroscopy. 4. Collision-Induced Quasi-Continuous Background Effects

The 4nu(CH) rovibrational manifold around 12 700 cm(-1) in the electronic ground state, X, of acetylene (C2H2) is monitored by time-resolved infrared-ultraviolet double-resonance (IR-UV DR) spectroscopy. An IR laser pulse initially prepares rotational J states, associated with the "IR-bright" (nu1 + 3nu3) or (1 0 3 0 0)0 vibrational combination level, and subsequent collision-induced state-to-state energy transfer is probed by UV laser-induced fluorescence. Anharmonic, l-resonance, and Coriolis couplings affect the J states of interest, resulting in a congested rovibrational manifold that exhibits complex intramolecular dynamics. In preceding papers in this series, we have described three complementary forms of the IR-UV DR experiment (IR-scanned, UV-scanned, and kinetic) on collision-induced rovibrational satellites, comprising both regular even-DeltaJ features and unexpected odd-DeltaJ features. This paper examines an unusual collision-induced quasi-continuous background (CIQCB) effect that is apparently ubiquitous, accompanying regular even-DeltaJ rovibrational energy transfer and accounting for much of the observed collision-induced odd-DeltaJ satellite structure; certain IR-bright (1 0 3 0 0)0 rovibrational states (e.g., J = 12) are particularly prominent in this regard. We examine the mechanism of this CIQCB phenomenon in terms of a congested IR-dark rovibrational manifold that is populated by collisional transfer from the nearly isoenergetic IR-bright (1 0 3 0 0)0 submanifold.

Rovibrational Energy Transfer in the 4νCH Manifold of Acetylene, Viewed by IR-UV Double Resonance Spectroscopy. 3. State-to-State J-Resolved Kinetics

Abstract Time-resolved infrared-ultraviolet double resonance (IR-UV DR) spectroscopy is used to study the kinetics of collision-induced state-to-state molecular energy transfer between rovibrational states in the 12700-cm−1 4νCH manifold of the electronic ground state of acetylene (C2H2). Particular initial and final rovibrational J-states are prepared and monitored by a pair of tunable laser pulses (IR PUMP and UV PROBE) and the kinetic results recorded by continuously varying the time delay between those pulses at a set sample pressure. After allowing for collision-induced quenching of fluorescence and mass transfer from the IR-UV optical excitation zone (by beam flyout and diffusion), an array of kinetic data for J-resolved energy-transfer channels can be interpreted by means of a mechanistically structured master-equation model. This paper focuses on kinetics derived by probing C2H2 in its 4νCH J = 12 state (which is affected by intramolecular perturbations and implicated in unusual collision-induced quasi-continuous background effects) and J-resolved collision-induced rovibrational energy transfer with both even ΔJ and (supposedly forbidden) odd ΔJ.