With the increasing use of oceans for engineering purposes, such as the installation of suction anchors and pipelines, the stability of seabed structures has become a pivotal concern and is intricately linked to the characteristics of seabed soils. This study focuses specifically on deep-sea soft clay, a predominant seabed soil type distinguished by its high water content, thixotropy, and low permeability. These clays are vulnerable to destabilization and damage when disturbed, thereby posing threats to seabed installations. While the existing literature extensively examines the cyclic behavior of clay, considering factors such as the pore pressure response and strain and deformation characteristics, there is a notable gap in research addressing the behavior of deep-sea soft clay under comprehensive stress levels and prolonged cyclic loading. In this study, cyclic shear tests of the natural marine clay of the South China Sea were conducted, and the cyclic stress ratio (CSR), overpressure consolidation ratio (OCR), consolidation ratio (Kc), and loading frequency were varied. It was found that the CSR, OCR, and Kc significantly impact the cumulative dynamic strain in deep-sea soft clay during undrained cyclic dynamic tests. Higher CSR values lead to increased dynamic strain and structural failure risk. Subsequently, a dynamic strain-dynamic pore pressure development model was proposed. This model effectively captures the cumulative plastic deformation and dynamic pore pressure development, showing correlations with the CSR, OCR, and Kc, thus providing insights into the deformation and pore pressure trends in deep-sea clay under high cyclic dynamic loading conditions. This research not only furnishes essential background information but also addresses a critical gap in understanding the behavior of deep-sea soft clay under cyclic loading, thereby enhancing the safety and stability of seabed structures.