Computations with univariate polynomials, like the evaluation of product, quotient, remainder, greatest common divisor, etc, are closely related to linear algebra computations performed with structured matrices having the Toeplitz-like or the Hankel-like structures. The discrete Fourier transform, and the FFT algorithms for its computation, constitute a powerful tool for the design and analysis of fast algorithms for solving problems involving polynomials and structured matrices. We recall the main correlations between polynomial and matrix computations and present two recent results in this field: in particular, we show how Fourier methods can speed up the solution of a wide class of problems arising in queueing theory where certain Markov chains, defined by infinite block Toeplitz matrices in generalized Hessenberg form, must be solved. Moreover, we present a new method for the numerical factorization of polynomials based on a matrix generalization of Koenig's theorem. This method, that relies on the evaluation/interpolation technique at the Fourier points, reduces the problem of polynomial factorization to the computation of the LU decomposition of a banded Toeplitz matrix with its rows and columns suitably permuted. Numerical experiments that show the effectiveness of our algorithms are presented