Landrace Research Articles

Weak purifying selection in allelic diversity of the ADSL gene in indigenous and local chicken breeds and red junglefowl in Thailand

High levels of purine and uric acid, which are associated with health issues such as gout and cardiovascular disease, are found in the meat of fast-growing broiler chickens, which raises concerns about the quality of chicken meat and the health of the consumers who consume it. High genetic homogeneity and uniformity, particularly in genes involved in the synthesis of inosine monophosphate (IMP) and subsequent process of purine synthesis, which are associated with the meat quality, are exhibited in commercial broiler chickens owing to intensive inbreeding programs. Adenosine succinate lyase (ADSL) is a key enzyme involved in de novo purine biosynthetic pathway and its genetic polymorphisms affect IMP metabolism and purine content. In this study, we investigated the polymorphism of the ADSL gene in indigenous and local chicken breeds and red junglefowl in Thailand, using metabarcoding and genetic diversity analyses. Five alleles with 73 single nucleotide polymorphisms in exon 2, including missense and silent mutations, which may act on the synthesis efficiency of IMP and purine. Their protein structures revealed changes in amino acid composition that may affect ADSL enzyme activity. Weak purifying selection in these ADSL alleles was observed in the chicken population studied, implying that the variants have minor fitness impacts and a greater probability of fixation of beneficial mutations than strong purifying selection. A potential selective sweep was observed in Mae Hong Son chickens, whose purine content was lower than that in other breeds. This suggests a potential correlation between variations of the ADSL gene and reduced purine content and an impact of ADSL expression on the quality of chicken meat. However, further studies are required to validate its potential availability as a genetic marker for selecting useful traits that are beneficial to human health and well-being.

Trends and gaps in sweet potato (Ipomoea batatas L.) improvement in sub‐Saharan Africa: Drought tolerance breeding strategies

AbstractThe main challenge facing agricultural crop production in the current global climate change scenario is sustainability. Drought, as a yield‐limiting factor, has become a major threat to international food security. Tolerance to drought is a complex trait and its response is carried out by various genes, transcription factors, microRNAs, hormones, proteins, cofactors, ions and metabolites. The complexity of the trait has limited the development of drought‐tolerant sweet potato cultivars by traditional breeding. Advances in sweet potato breeding to exploit the full potential of the crop to contribute to improved and higher performing sweet potato cultivars, adapted to increasingly risky rainfed conditions, mainly drought, are key to making food production systems more efficient and more tolerant to pressure from drought and other stressors. Genetic gain for yield potential in sweet potato has improved mostly in African countries, mainly as a result of an accelerated breeding scheme. The focus on maximising the utilisation of molecular tools for sweet potato improvement and yield has been recently explored in breeding programmes in sub‐Saharan Africa (SSA). This article provides an update on the trends and gaps in sweet potato breeding in SSA, reviewing the relevant strategies used to improve sweet potato in the region. Finally, the perspectives of using new advanced tools including genetic engineering and genome editing, and the challenges associated with climate change for further improvement of the crop are highlighted. Collaborative efforts in African countries are driving advances in breeding methods through the incorporation of molecular tools to develop drought‐tolerant sweet potato varieties that are important to global food security despite challenges posed by the drastic change in climate.

Genetic diversity and population structure of four Anatolian sheep revealed by genome-wide ddRADseq data

This is the first wide-scale study to reveal next-generation sequencing-based and comprehensive study to reveal genetic diversity, population structure, and phylogenetic relationships of some of Türkiye's indigenous fat-tailed sheep breeds. A total of 80 animals belonging to Akkaraman (AKR), Güney Karaman (GKR), Morkaraman (MKR), and Karakaş (KRK) sheep breeds were genotyped with genome-wide of 296.097 single nucleotide polymorphisms (SNPs) data recovered from double digest restriction site-associated DNA sequencing (ddRADseq) libraries processed by Illumina HiSeq X Ten instrument. Minor allele frequency (MAF) ranged from 0.311 (MKR) to 0.316 (AKR and GKR). Observed heterozygosity (HO) values were higher than expected values (HE) across all populations with a mean of 0.307. Negative inbreeding coefficient (FIS) values were observed in four sheep populations varying between −0.034 (AKR) to −0.060 (MKR). Cross-entropy criterion-based ADMIXTURE analysis demonstrated that four Anatolian sheep breeds were represented by two ancestral populations in which GKR and AKR were distinct, while KRK and MKR were mixed populations. Genetic distance-based tree, discriminant analysis of principal components (DAPC), and ADMIXTURE analyses confirmed that GKR, which is believed to be derived from the AKR breed, has become genetically different from other sheep populations. Moreover, no migration from and into the GKR breed was detected, while a migration edge was drawn from the KRK and MKR clade into the AKR breed by the TreeMix algorithm. This study confirmed that high-density SNP data obtained from advanced next-generation sequencing (NGS) platforms are efficient in genetically distinguishing animal breeds, even varieties. It is recommended that further NGS-based studies could be carried out to better characterize different indigenous livestock populations raised in Türkiye.

Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in subtelomeric regions and micro-chromosomes with high G/C contents.

Although multiple chicken genomes have been assembled and annotated, the numbers of protein-coding genes in chicken genomes and their variation among breeds are still uncertain due to the low quality of these genome assemblies and limited resources used in their gene annotations. To fill these gaps, we recently assembled genomes of four indigenous chicken breeds with distinct traits at chromosome-level. In this study, we annotated genes in each of these assembled genomes using a combination of RNA-seq- and homology-based approaches. We identified varying numbers (17,497-17,718) of protein-coding genes in the four indigenous chicken genomes, while recovering 51 of the 274 "missing" genes in birds in general, and 36 of the 174 "missing" genes in chickens in particular. Intriguingly, based on deeply sequenced RNA-seq data collected in multiple tissues in the four breeds, we found 571 ~ 627 protein-coding genes in each genome, which were missing in the annotations of the reference chicken genomes (GRCg6a and GRCg7b/w). After removing redundancy, we ended up with a total of 1,420 newly annotated genes (NAGs). The NAGs tend to be found in subtelomeric regions of macro-chromosomes (chr1 to chr5, plus chrZ) and middle chromosomes (chr6 to chr13, plus chrW), as well as in micro-chromosomes (chr14 to chr39) and unplaced contigs, where G/C contents are high. Moreover, the NAGs have elevated quadruplexes G frequencies, while both G/C contents and quadruplexes G frequencies in their surrounding regions are also high. The NAGs showed tissue-specific expression, and we were able to verify 39 (92.9%) of 42 randomly selected ones in various tissues of the four chicken breeds using RT-qPCR experiments. Most of the NAGs were also encoded in the reference chicken genomes, thus, these genomes might harbor more genes than previously thought. The NAGs are widely distributed in wild, indigenous and commercial chickens, and they might play critical roles in chicken physiology. Counting these new genes, chicken genomes harbor more genes than originally thought.

Light microscopic morphology of blood cells of non-descript indigenous Zoar chicken of Mizoram, India.

Identifying and analysing distinct blood cells is crucial for the diagnosis and treatment of diseases in the field of biomedicine. The present study was undertaken to study the cytomorphological and cytochemical characteristics of the blood cells of Zoar, a non-descript indigenous breed of chicken extensively reared under backyard poultry farming in Mizoram, India. For this study, 2 mL of blood samples were aseptically collected from the wings veins of 12 chickens and were processed for light microscopic study under standard protocols. The matured erythrocytes were elliptical, while the immature erythrocytes appeared oval. The heterophils were positive for SBB (SBB), Periodic Acid Schiff (PAS), acid phosphatase, alkaline phosphatase and Arylsulphatase while the eosinophils were positive for SBB, PAS, alkaline phosphatase, cytochrome oxidase and peroxidase. The basophils of were positive for toluidine blue while the thrombocytes were positive for PAS. These cytochemical and cytoenzymatic staining properties plays a very important role in diagnosis, differentiation, and classification of leukaemias.

Use of equine embryo -derived mesenchymal stromal cells and their extracellular vesicles as a treatment for persistent breeding-induced endometritis in susceptible mares

Persistent breeding induced endometritis (PBIE) is a significant cause of infertility in mares. The development of a safe, universal, readily available therapeutic to manage PBIE and facilitate an optimal uterine environment for embryo development may improve pregnancy rates in susceptible mares. Mesenchymal stromal cells (MSCs) are being used increasingly as a therapeutic mediator for inflammatory conditions such as endometritis, and early gestational tissue provides a unique source of multipotent stem cells for creating MSCs. Extracellular vesicles (EVs) are mediators of cell communication produced by many different cell types. This study utilized embryo-derived mesenchymal stromal cells (EDMSCs) and their EVs as a potential therapeutic modality for PBIE in two groups: a) PBIE-susceptible mares challenged with pooled dead sperm (n=5); and b) client-owned mares diagnosed as susceptible to PBIE (n=37 mares and 40 estrous cycles). Mares pre-treated with intrauterine EDMSCs or their EVs resulted in a significant reduction in the accumulation of intrauterine fluid post-breeding. Nine of 19 (47%) mares treated with EDMSCs prior to natural breeding and 13 of 20 (65%) mares treated with EDMSC derived EVs were pregnant after the first cycle and 12 of 18 (67%) mares treated with EDMSCs, and 15 of 19 (79%) mares treated with EVs conceived by the end of the breeding season. These preliminary clinical studies are the first reports of the use of EDMSCs or their EVs as a potential intrauterine therapy for the management of PBIE susceptible mares.

Artificial selection footprints in indigenous and commercial chicken genomes

BackgroundAlthough many studies have been done to reveal artificial selection signatures in commercial and indigenous chickens, a limited number of genes have been linked to specific traits. To identify more trait-related artificial selection signatures and genes, we re-sequenced a total of 85 individuals of five indigenous chicken breeds with distinct traits from Yunnan Province, China.ResultsWe found 30 million non-redundant single nucleotide variants and small indels (< 50 bp) in the indigenous chickens, of which 10 million were not seen in 60 broilers, 56 layers and 35 red jungle fowls (RJFs) that we compared with. The variants in each breed are enriched in non-coding regions, while those in coding regions are largely tolerant, suggesting that most variants might affect cis-regulatory sequences. Based on 27 million bi-allelic single nucleotide polymorphisms identified in the chickens, we found numerous selective sweeps and affected genes in each indigenous chicken breed and substantially larger numbers of selective sweeps and affected genes in the broilers and layers than previously reported using a rigorous statistical model. Consistent with the locations of the variants, the vast majority (~ 98.3%) of the identified selective sweeps overlap known quantitative trait loci (QTLs). Meanwhile, 74.2% known QTLs overlap our identified selective sweeps. We confirmed most of previously identified trait-related genes and identified many novel ones, some of which might be related to body size and high egg production traits. Using RT-qPCR, we validated differential expression of eight genes (GHR, GHRHR, IGF2BP1, OVALX, ELF2, MGARP, NOCT, SLC25A15) that might be related to body size and high egg production traits in relevant tissues of relevant breeds.ConclusionWe identify 30 million single nucleotide variants and small indels in the five indigenous chicken breeds, 10 million of which are novel. We predict substantially more selective sweeps and affected genes than previously reported in both indigenous and commercial breeds. These variants and affected genes are good candidates for further experimental investigations of genotype-phenotype relationships and practical applications in chicken breeding programs.

Optimizing Bangkaew dog breed identification using DNA technology.

The Bangkaew dog is an indigenous dog breed in the Phitsanulok province of Thailand. This breed is recognized by the Fédération Cynologique Internationale (FCI), a global canine organization. The unique traits of the Bangkaew breed lead to purebred selection for breeding, while only their traits and pedigree from parental history are recorded. Determination of the risk of inbreeding depression and the origin of unknown DNA profiles is essential due to the challenges in predicting puppy characteristics, which are crucial for breed management and conservation. This study aimed to emphasize that current allelic frequency data for the Bangkaew dog breed must be considered for precise individual identification. Approximately 82 Bangkaew dogs from various Thai localities were studied using 15 microsatellite markers for genotypic monitoring and individual identification. Maternal genetic inheritance was assessed via mtDNA D-loop analysis. The results revealed high genetic diversity in the Bangkaew breed, indicating low potential for inbreeding. We also found that using a 15 loci microsatellite panel was effective for the identification of Bangkaew dogs. The optimized 10 loci microsatellite genotyping panel developed in this study presents improved identification testing efficiency, promoting both time- and cost-effectiveness. Analysis of microsatellite DNA markers in Bangkaew dogs using an optimized panel of 10 loci selected from 15 loci effectively facilitated individual identification. This approach not only enhances time and cost efficiency, but also provides accurate allelic frequency estimates, which are crucial for the realistic evaluation of DNA evidence.

Динамика на някои биохимични показатели при две местни породи овце в зависимост от сезона, надморската височина и наличието на паразити

The aim of the present study is to evaluate the values of some enzymes and metabolites - ALT, AST, ALP, serum iron and glucose of two herds of Bulgarian native sheep breeds raised at different altitudes, depending on the season, their body condition score (BCS) and the presence of gastrointestinal parasites. The research was conducted with 20 animals each in farms in the village of Mirkovo (715 m above sea level) with Sofia (Elinpelin) sheep breed and in the village of Gubesh (1040 m above sea level) with Central Balkan sheep breed. Body condition assessment was performed during sampling by one individual using an adapted system. Fresh faeces (total sample) were also collected for parasitological tests (coproovoscopy and coprolarvoscopy). Analysis of biochemical parameters was performed in extracted blood plasma with a BTS-350 semi-automatic biochemical analyzer. AST and glucose levels were normal, ALP and Fe were lower in both seasons, and ALT was higher than reference values limits only in summer for both breeds. There were significant differences between the two breeds in summer for BCS, ALT and glucose (p&lt;0.001, p&lt;0.05 and p&lt;0.01 respectively), in winter - only for Fe (p&lt;0.001) and in both seasons for HCT (p&lt;0.001 and p&lt;0.01 respectively), AST (p&lt;0.001 and p&lt;0.05 respectively) and ALP (p&lt;0.001 each). Regarding the activity of AST, there are no significant differences between the two seasons and in both breeds, however, there are such differences only in Central Balkan sheep for BCS and Fe (respectively p&lt;0.01 and p&lt;0.001), and in both breeds together with different degrees of freedom - for all other indicators (HCT, ALT, ALP and glucose).

Selection signatures and landscape genomics analysis to reveal climate adaptation of goat breeds

Goats have achieved global prominence as essential livestock since their initial domestication, primarily owing to their remarkable adaptability to diverse environmental and production systems. Differential selection pressures influenced by climate have led to variations in their physical attributes, leaving genetic imprints within the genomes of goat breeds raised in diverse agroecological settings. In light of this, our study pursued a comprehensive analysis, merging environmental data with single nucleotide polymorphism (SNP) variations, to unearth indications of selection shaped by climate-mediated forces in goats. Through the examination of 43,300 SNPs from 51 indigenous goat breeds adapting to different climatic conditions using four analytical methods: latent factor mixed models (LFMM), F-statistics (Fst), Extended haplotype homozygosity across populations (XPEHH), and spatial analysis method (SAM), A total of 74 genes were revealed to display clear signs of selection, which are believed to be influenced by climatic conditions. Among these genes, 32 were consistently identified by at least two of the applied methods, and three genes (DENND1A, PLCB1, and ITPR2) were confirmed by all four approaches. Moreover, our investigation yielded 148 Gene Ontology (GO) terms based on these 74 genes, underlining pivotal biological pathways crucial for environmental adaptation. These pathways encompass functions like vascular smooth muscle contraction, cellular response to heat, GTPase regulator activity, rhythmic processes, and responses to temperature stimuli. Of significance, GO terms about endocrine regulation and energy metabolic responses, key for local adaptation were also uncovered, including biological processes, such as cell differentiation, regulation of peptide hormone secretion, and lipid metabolism. These findings contribute to our knowledge of the genetic structure of climate-triggered adaptation across the goat genome and have practical implications for marker-assisted breeding in goats.

Mitigate the Impact of Various Abiotic Stress by Using Grafting in Tomato (Solanum lycopersicum L.) and Other Vegetables: A Comprehensive Review

Grafting technology has developed as a promising alternative to slow traditional breeding methods for boosting abiotic stressor resistance, soil pathogen tolerance, and fruit vegetable output and quality. Tomato, cucumbers, watermelons, eggplants, muskmelon and sweet papers have been grafted commercially to increase plant tolerance to factors such as salt, drought, waterlogging, the heavy metal toxicity, extreme temperatures, and variations in vegetable crop yield and quality. The goal of this study was to evaluate the research on the effect of grafting in reducing abiotic stressors and increasing vegetable crop production and quality. At different phases of culture, abiotic and biotic stressors harm tomato (Solanum lycopersicum L.), a significant vegetable crop globally. Drought, salt, floods, severe temperatures, and heavy metals may alter plant morphology, physiology, and biochemistry, affecting crop development, production, and quality. Grafting technology is an excellent alternative to delayed breeding operations to reduce biotic and abiotic stressors. Grafted tomatoes have higher osmolytes, antioxidant enzymes, photosynthesis, which improves plant growth and fruit harvests and makes them more tolerant to abiotic challenges. Additionally, tomato grafting on proper rootstocks enhances fruit nutritional value, including lycopene, β-carotene, ascorbic acid, and proteins. This information may help researchers and producers improve vegetable quality, especially under abiotic stress.

E-Commerce Participation, Subjective Norms and Grassland Utilization Pressure: An Empirical Evidence of Herdsmen in Inner Mongolia, China

The general requirements of China’s rural revitalization strategy are industrial prosperity, ecological livability and rich life. However, the traditional livestock breeding model has struggled to balance the dual requirements of production development and ecological protection, and it is urgent to inject new impetus and explore new development paths. At present, e-commerce has become a bridge between pastoral areas and cities, herdsmen and consumers. E-commerce participation is not only an important starting point for herdsmen to increase the added value and profit space of livestock products, but also an effective way to change the original breeding behavior based on the premise of destroying grassland. Therefore, this paper presents an in-depth study on the issue of e-commerce enabling grassland ecological restoration, aiming to provide more scientific and effective guidance for e-commerce to be used to achieve a win–win situation in economy and ecology. Therefore, based on the data of 271 herdsmen in pastoral areas of Inner Mongolia, we used the OLS model and the two-stage least squares (2SLS) method to identify the direct impact of herdsmen’s e-commerce participation on grassland utilization pressure. The empirical results show that e-commerce participation can significantly decrease the grassland utilization pressure. The conclusion was still valid after alleviating endogeneity and conducting a robustness test. The results of a mechanism analysis suggest that the reduction effect of e-commerce participation on grassland utilization pressure is mainly due to price incentive, reputation incentive and place identity. Subjective norms can strengthen the inhibitory effect of e-commerce participation on grassland utilization pressure. Furthermore, a heterogeneity analysis demonstrates that e-commerce participation has a better, decreased impact on the grassland utilization pressure on the banners of China’s rural e-commerce demonstration county program. Under a counterfactual assumption, if herdsmen who can participate in e-commerce choose not to do this, their grassland utilization pressure will increase.

Effects of UV-B Radiation Exposure on Transgenerational Plasticity in Grain Morphology and Proanthocyanidin Content in Yuanyang Red Rice.

The effect of UV-B radiation exposure on transgenerational plasticity, the phenomenon whereby the parental environment influences both the parent's and the offspring's phenotype, is poorly understood. To investigate the impact of exposing successive generations of rice plants to UV-B radiation on seed morphology and proanthocyanidin content, the local traditional rice variety 'Baijiaolaojing' was planted on terraces in Yuanyang county and subjected to enhanced UV-B radiation treatments. The radiation intensity that caused the maximum phenotypic plasticity (7.5 kJ·m-2) was selected for further study, and the rice crops were cultivated for four successive generations. The results show that in the same generation, enhanced UV-B radiation resulted in significant decreases in grain length, grain width, spike weight, and thousand-grain weight, as well as significant increases in empty grain percentage and proanthocyanidin content, compared with crops grown under natural light conditions. Proanthocyanidin content increased as the number of generations of rice exposed to radiation increased, but in generation G3, it decreased, along with the empty grain ratio. At the same time, biomass, tiller number, and thousand-grain weight increased, and rice growth returned to control levels. When the offspring's radiation memory and growth environment did not match, rice growth was negatively affected, and seed proanthocyanidin content was increased to maintain seed activity. The correlation analysis results show that phenylalanine ammonialyase (PAL), cinnamate-4-hydroxylase (C4H), dihydroflavonol 4-reductase (DFR), and 4-coumarate:CoA ligase (4CL) enzyme activity positively influenced proanthocyanidin content. Overall, UV-B radiation affected transgenerational plasticity in seed morphology and proanthocyanidin content, showing that rice was able to adapt to this stressor if previous generations had been continuously exposed to treatment.

Fruit Agronomic and Quality Traits of Tomato F1 Hybrids Derived from Traditional Varieties

The high genetic diversity of the tomato and its high micronutrient content make this fruit very interesting from an economic and nutritional point of view. The genetic erosion suffered by this crop, due to breeding objectives based on yield and marketing, makes it necessary to return to the origins in search of the nutritional and organoleptic quality lost in traditional varieties. In this study, the agronomic, physical, organoleptic, and nutritional characteristics of eighteen F1 hybrids, obtained by crossing fourteen traditional varieties, previously selected for their quality, were studied in order to select genotypes of superior quality that could be candidates for new varieties. All the parameters studied were strongly influenced by genotype, with a wide range between varieties. Most of the experimental hybrids showed higher quality scores than the commercial hybrids used as controls, due to the extensive selection process carried out on the parents in previous work. Principal component analysis revealed the characteristics of each hybrid that distinguished it from the others. Some hybrids (H1, H2, and H4) stood out for their high concentration of active compounds, others (H14, H13, H8, H15, H7, and H9) for their agronomic performance and high β-carotene content, and H3 was the only one to contain chlorophyll in its ripe fruits. Finally, the evaluation index allowed the selection of five hybrids with interesting characteristics, combining good yield performance and high quality. The results of this work have allowed for the selection of a group of hybrids with high organoleptic and nutritional quality which will be used as parents in a breeding programme, in which their characteristics will be fixed and their resilience will be increased through the introduction of virus resistance.

Effect of Cooking and In Vivo Glycemic Response of Sri Lankan Traditional Rice: A Source of Sustainable and Underutilized Functional Food

The availability of scientific information on the nutrient composition of cooked rice and glycemic responses of Sri Lankan traditional rice varieties with a high export potential is scarce. This study determined the nutrient composition (moisture, ash, crude fat, and protein, digestible (DC) and total carbohydrate (TC), resistant starch (RS), insoluble (IDF), soluble (SDF), and total dietary fiber (TDF)), amylose, amylopectin, and glycemic indices (GI) of sixteen cooked unpolished traditional rice varieties with standard methods. Cooked rice and rice flour contained 55.9-70.6% (fresh weight) and 6.2-9.5% (dry basis) moisture respectively. Ash, crude fat and protein contents were 1.1-1.6%, 4.1-6.0% and 4.8-9.5% respectively. Digestible carbohydrates comprised 73.8-83.8% with over 80% TC. Cooking increased the RS (1.3-5.5%) while IDF, SDF and TDF of cooked rice were 3.8-6.4%, 0.4-4.8%, and 5.4-9.8% respectively. All varieties contained high amylose (24.2-35.7%) except for one variety and elicited either low or medium GI (49-67). GI and amylose of cooked rice showed a significant (P=0.04) negative correlation. Significant (P≤0.05) positive correlation between moisture and rice portions containing 50g of carbohydrate allows the selection of rice that provides low glycemic loads. Unpolished traditional rice, rich in nutrients eliciting low or medium GI are highly suitable in diet plans for controlling the glycemic response and in achieving sustainable health benefits.

Consumer Preferences for Native Chicken Meat in India: Implications for Sustainable Production and Household Dynamics

Indigenous and native chickens play a pivotal role in rural economies, providing income and food security. India is one of the world's top producers of poultry, with a total chicken population of 851.8 million in 2019 and 37.2% representing native or indigenous breeds. In recent years, the rising demand for native chicken meat and government-backed projects in India have led to a shift from traditional backyard chicken raising to semi-intensive and intensive farms, empowering marginalized communities and women. Consumer preferences for native chicken meat in India was examined in this study, employing a two-part model with a logit model and log-normal OLS model to analyse responses from 503 consumers. Additionally, factor analysis revealed nine key factors influencing attitudes. Gender, age, income, education, marital status, cohabitation, household size, the presence of seniors or children, and consumption frequency significantly shaped preferences. Factors such as psychological well-being, affordability, knowledge, nutrition, food quality, fitness, purity, and sustainability had negative effects on preference and quantity purchased. The study reveals a strong consumer preference for native chicken meat, attributed to its organic nature, including traditional farming and sustainable production. To enhance sustainability of semi-intensive and intensive native chicken farming, it is imperative to address pricing disparities and ensure the consistent availability of native chicken meat. Achieving long-term sustainability in native chicken farming requires aligning consumer demand with ethical and environmentally sustainable farming practices.

Radiographic Determination Of Costophrenic Angle Sizes In The Nigerian Indigenous Dog

Assessment of major organs like the heart, trachea, lungs, and diaphragm forms the most common thoracic investigation in small animal radiology. In other words, consideration of the sizes and shapes of thoracic sinuses are usually overlooked, unless the angular recesses are grossly abnormal. The objective of this cross-sectional prospective radiologic study was to measure and document normal index values of costophrenic angular recesses in the Nigerian indigenous dog breed. A total 30 dogs (average body weight: 8.19±2.45 kg) were used for the investigation. Thoracic dorsoventral (DV) and ventrodorsal (VD) projections were obtained of each dog, giving a total of 60 radiographs. Each thoracic silhouette was carefully studied and the costo-phrenic angular recesses (CPAs) were measured, in both DV and VD views, and recorded. Expressed as means and standard errors of means, the results obtained were: 23.40±0.770/23.40±0.540 for the left/right DV CPAs and 24.20±0.620/24.27±0.600 for left/right VD CPAs, respectively. The results of this study are clinically relevant and objectively easily applicable in canine practice for thoracic studies.

Assessment of Genomic Diversity and Selective Pressures in Crossbred Dairy Cattle of Pakistan.

Improving the low productivity levels of native cattle breeds in smallholder farming systems is a pressing concern in Pakistan. Crossbreeding high milk-yielding holstein friesian (HF) breed with the adaptability and heat tolerance of Sahiwal cattle has resulted in offspring that are well-suited to local conditions and exhibit improved milk yield. The exploration of how desirable traits in crossbred dairy cattle are selected has not yet been investigated. This study aims to provide the first overview of the selective pressures on the genome of crossbred dairy cattle in Pakistan. A total of eighty-one crossbred, thirty-two HF and twenty-four Sahiwal cattle were genotyped, and additional SNP genotype data for HF and Sahiwal were collected from a public database to equate the sample size in each group. Within-breed selection signatures in crossbreds were investigated using the integrated haplotype score. Crossbreds were also compared to each of their parental breeds to discover between-population signatures of selection using two approaches: cross-population extended haplotype homozygosity and fixation index. We identified several overlapping genes associated with production, immunity, and adaptation traits, including U6, TMEM41B, B4GALT7, 5S_rRNA, RBM27, POU4F3, NSD1, PRELID1, RGS14, SLC34A1, TMED9, B4GALT7, OR2AK3, OR2T16, OR2T60, OR2L3, and CTNNA1. Our results suggest that regions responsible for milk traits have generally experienced stronger selective pressure than others.

Harmonizing smart technologies with building resilience and sustainable built environment systems

Given the escalating concerns posed by climate change-related disasters, there is an urgent need for a more sustainable and resilient built environment. The developing digital revolution in recent years has the potential to harness its superior features to achieve sustainable and resilient building sector goals. This paper aims to present a futuristic perspective on the three basic pillars of a more sustainable and resilient built environment. These pillars comprise sustainability, resilience, and the utilization of Artificial Intelligence (AI) for monitoring and managing structural health and performance. This is evident in the context of smart buildings and their ability to enhance energy consumption efficiency, improve quality of life, and strengthen structural health monitoring in terms of reducing damage and facilitating timely maintenance operations. Through comparing the components of the virtual city designed from two types of alkali-activated binder concrete (AABC) and ordinary Portland cement (OPC) concrete, all components of the city designed from AABC showed a reduction in the amount of emitted CO2. The highest decrease was observed in the schools designed from AABC, where the reduction was about 25 %, while the lowest decrease was for the villas and infrastructure; about 11 % and 10 % respectively, compared to those designed from OPC concrete. The results also indicated that the utilization of sustainable concrete instead of traditional varieties has the potential to decrease CO2 emissions by up to 25 %. The importance of this work resides in establishing a basis for forthcoming research that combines intelligent, environmentally friendly, and resilient building practices.

Metabolome Comparison of Sichuan Dried Orange Peels (Chenpi) Aged for Different Years

Chuan chenpi is obtained by aging the peel of Citrus reticulata cv. ‘Dahongpao’, a traditional Chinese citrus variety. Chenpi has been used in traditional Chinese medicine since ancient times. It is believed that the longer the ripening period, the better the health properties. The composition of the metabolome of Chuan chenpi and how different aging periods affect it are not known. Current analysis was performed using Chuan chenpi aged for one (CR1), five (CR5) and ten (CR10) years. Initially, the total flavonoid and phenolic content were quantified, and then the global metabolomic profiles of CR1, CR5 and CR10 were studied. The total flavonoid and phenolic content increased significantly in CR5 compared to CR1 and then decreased in CR10. The metabolomic analyses led to the identification of 781 compounds belonging to more than 19 classes. Flavonoids and phenolic acids accounted for almost half (~48%) of the Chuan chenpi metabolome. Other major classes included amino acids (~8%), alkaloids (7.17%), organic acids (~7%), sugars (5.5%), nucleotides and derivatives (~5%), free fatty acids (3.33%) and other classes. The metabolite diversity of glycerol esters, terpenoids and stilbenes was constant during the three storage periods, whereas those of lignans, vitamins, coumarins, lipids and free fatty acids showed slight variations. The subclass distribution of phenylpropanoids, quinones, sphingolipids, and organic acids showed a decrease in diversity from CR1 to CR5, with CR10 showing a further decrease or remaining constant. Amino acids and derivatives, phenolic acids and flavonoids showed an increasing trend in the number of metabolites over the storage period. Compared to CR5, CR10 showed a higher number of differentially accumulated metabolites; in particular, flavonoids, phenolic acids and organic acids showed increased accumulation in CR10. In conclusion, the metabolome of Chuan chenpi is rich in flavonoids and phenols. Aging significantly affects the metabolome composition. Both CR5 and CR10 may be useful materials for health studies depending on the objectives of pharmacological use.