Mangifera indica L., known as mango tree, is a species belonging to family Anacardiaceae, widely used in popular medicine whose leaves are used to treat several diseases. Although several studies did not detect the cytogenotoxic activity of M. indica leaf extract, other authors have observed these feature and highlighted the importance of further research about the toxic potential of M. indica leaf extract. The aim of the current research is to assess the cytogenotoxic potential of the aqueous extract of M. indica leaves through comet DNA assay and micronucleus test. It was possible observing significant increase in the number of micronucleated polychromatic erythrocytes (MNPCE) in mice subjected to the treatment with the extract, in addition to significant increase in DNA damage index in comparison to the negative control group. The extract also presented cytotoxic effect caused by significant reduction in the polychromatic:normochromatic erythrocyte (PCE/NCE) ratio in comparison to the negative control group. The extract of M. indica leaves is cytogenotoxic under the conditions used in the current research; this outcome highlighted the importance of comparative studies applied to the several used processing methods, as well as to cultivation conditions, to certify the safety in the popular use of medicinal plants.