Our hypothesis that silica (Si) depletion in Lake Michigan and the severe Si depletion that characterizes the lower Great Lakes were induced by increased phosphorus (P) inputs was supported by bioassay experiments showing increased Si uptake by diatoms with relatively small P enrichments. We propose that severe Si depletion (Si concentrations being reduced to ≤0.39 mg SiO2∙L−1prior to thermal stratification) results when P levels are increased to the extent that increased diatom production reduces Si concentrations to limiting levels during the thermally mixed period. Large P enrichments such as those that characterized the eastern and central basis of Lake Erie and Lake Ontario in the early 1970s are necessary to produce severe Si depletion. It is clear that severe Si depletion in the lower lakes was produced by P enrichment because inflowing waters from Lake Huron have smaller P concentrations and larger Si concentrations than the outflowing waters of either Lake Erie or Lake Ontario. Severe Si depletion probably began in the 1940s or 1950s as the result of increased P loads from expanded sewering of an increasing urban population and the introduction of phosphate detergents. The model proposed for biogeochemical Si depletion is consistent with previous findings of high rates of internal recycling because, under steady-state conditions for Si inputs, any increase in diatom production will produce an increase in permanent sedimentation of biogenic Si provided some fraction of the increased biogenic Si production is not recycled or unless there is a compensating increase in dissolution of diatoms.